[1.06742194713275 -0.0647289779037384 -0.0129786185528971 -0.504156428186383;0.0640570604170368 1.03810757864526 0.264771902067034 -35.5950606881021;0.00187339976487996 -0.243271292305983 1.07549747894582 -12.4822249273338;0 0 0 1] [1.06742194713275 -0.0647289779037384 -0.0129786185528971 -0.504156428186383;0.0640570604170368 1.03810757864526 0.264771902067034 -35.5950606881021;0.00187339976487996 -0.243271292305983 1.07549747894582 -12.4822249273338;0 0 0 1] [1 2 3 3 4 4 4 5 5 5 5 6 6] [363.758466620782 446.17448829999 155.754303482789 254.700587389218 466.769038412004 43.4347658659361 154.784699009005 473.587317007712 862.322447470141 627.972422403274 392.196364108374 337.712521550866 205.629786168251] [1416.32078687629;286.69880821757;517.254602183851;2944.03286063324;27426.2479268423;621.718756878943;4865.74730382672;14585.4809576377;17511.0352143652;34232.665796859;2280.63203981968;30774.2800203368;25501.3523582945] -6.03470420837402 [-0.504156428186383 -35.5950606881021 -12.4822249273338] [0.229255792583285 -0.0153456161022486 -0.0579701583167775] [1.06934392495428 1.06819004297477 1.10759685924151] [-0.00266791924090373 0.00447896821639655 0.0123378122593692] [-0.504156428186383 -35.5950606881021 -12.4822249273338] [0.229255792583285 -0.0153456161022486 -0.0579701583167775] [1.06934392495428 1.06819004297477 1.10759685924151] [-0.00266791924090373 0.00447896821639655 0.0123378122593692] /var/lib/condor/execute/dir_1039462/ds/XHCUMS/sub-0025996/ses-1 sub-0025996_ses-1_run-1_T1w /var/lib/condor/execute/dir_1039462/ds/XHCUMS/sub-0025996/ses-1/sub-0025996_ses-1_run-1_T1w.nii /var/lib/condor/execute/dir_1039462/ds/XHCUMS/sub-0025996/ses-1/sub-0025996_ses-1_run-1_T1w.nii /var/lib/condor/execute/dir_1039462/ds/XHCUMS/sub-0025996/ses-1/mri/msub-0025996_ses-1_run-1_T1w.nii /var/lib/condor/execute/dir_1039462/ds/XHCUMS/sub-0025996/ses-1/mri/p0sub-0025996_ses-1_run-1_T1w.nii ../XHCUMS/sub-0025996/ses-1/sub-0025996_ses-1_run-1_T1w /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/tpm/TPM.nii [1 1 2 3 4 2] mni [0 0.001 0.5 0.05 0.2] 0.0001 0.5 0.5 0.001 60 3 0 1 0 1.4 2 0.5 0 -Inf 0.5 0.5 0.5 2 0.5 0 1 optimal [1 0.3] ../derivatives/CAT12.8.1_2040 0 1 human 1070 1 1.5 12 Template_T1 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/brainmask.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii 0.5 22 1 2 0 1 5 0 0.7 0.1 BCGWHw 2 1 1 1 0 2 10 1 1 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii 0 gm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii 1 gm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii 1 gm wm [false] /var/lib/condor/execute/dir_1039462/ds/code/Tian_Subcortex_S2_7T.nii 1 gm wm csf [false] Desikan /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot 0 1 Destrieux /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot 0 1 HCP /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot 0 0 Schaefer2018_100P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot 1 0 Schaefer2018_200P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot 0 0 Schaefer2018_400P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot 1 0 Schaefer2018_600P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot 1 0 0 1 3 5 7 9 11 13 13 15 17 19 21 23 25 27 0 0 0 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii 0.5 [1 0.3] 0 pbt2x /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_5_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_6_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii 0 1 1639 16 0.465521661477727 13.5 0.0560709163546562 0.0588857904076576 [1.00000002506183 1.00000000958474 1.00000001518149] [0.999999965327107 1.00000000937667 1.00000001494389] 1.00000001660935 0 [6.80800008773804 139.561004638672 346.480010986328 453.490997314453] [0.015012426301837 0.307748138904572 0.764028429985046 1] T1 [6.8687248318511 62.0001785219293 41.0496647889486 22.1062531141379] [0.0153771806508303 0.13880130648613 0.0918988808989525 0.0494898036122322] 108.641967773438 0.239568084478378 0.130126357078552 0.143602192401886 0.546559751033783 [2.00000005012366 2.00000001916947 2.00000003036298] 2.00000003321871 1.5618691444397 1 [8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641] [8.624 8.624 8.624 8.624] 0.5 4.48981189727783 2.39250922203064 1.81537640094757 1.71428571428571 1.11638041536943 1.675 1.12141835689545 1.17771577835083 2.1490701592485 2.25338298762184 voxel dimensions RMS error of voxel size normalized gradient slope of the white matter boundary brain next to the image boundary mean within the tissue classes standard deviation within the tissue classes contrast between tissue classes contrast between tissue classes noise to contrast ratio inhomogeneity to contrast ratio average Euler number (characteristic) average area of topological defects average number of defects RMSE of the expected boundary intensity Ym of the IS, OS, and CS RMSE of the expected boundary position Ypp of the IS, OS, and CS Percentual area of self-intersections of the IS and OS. total intracranial volume (GM+WM+VT) relative tissue volume (CSF,GM,WM) relative WMH volume total surface area 1639 LINUX 7771 9.3 12.8.1 2040 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m cat12 20231031-060338 1639 1639 16 0.465521661477727 13.5 0.0560709163546562 0.0588857904076576 16 0.465521661477727 [361.395204101856 601.041138875865 533.514680751392 0 0] 1.86072154936465 0.00124383854808712 1958.02014018401 1495.95102372911 [0.241582243248157 0.401778620651355 0.356639136100488 0 0] [2.1702529858469 0.588520817591651] [2.14368486404419 0.716500369488564 1] [1.59224061450294 0.255094268039428 0.33366664912373;2.19493423486234 0.170918260840813 0.434950792063576;2.83310621186363 0.263529852475021 0.231382558812694] [0.779578486532738 0.17735915580049 0.44705060385268;3.85516648985419 0.409739644570198 0.55294939614732] 1.21622188646599 [2.18861787442811 5.06570798583611 4.25501322019555 0.5 0.5] 1.12438385480871 8.6192584546299 4.25931186497016 [0 1 0 11534.3365747336 0.477528100364584] [false] [0.00161666702479124 0.00117757660336792 0.308371603488922] [false] [731.95028261869 484.025916557833 611.61355445269 4023.18727991928 1195.23263076382 5234.95851835502] [590.846613491206 444.801803238404 414.000701596482 4461.60012636108 1090.09678087182 4533.55261973385] [180.78840637207 351.944213867188 446.963409423828] [-8.42735004425049 -8.42734718322754 8.11931705474854 180.78840637207 351.944213867188 446.963409423828 580.050903320312 1446.28442382812] [0 0.02 0.05 1 2 3 4 5] 16 1.5 3 0.5 [1 1 1 1 1] 0.015 [0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03] 15 0 2 1 Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0 [0.0213187336921692 0.0862251445651054 0.096992090344429 0 0] [0.0936025472200599 0 0.0936025472200599 0;0.223639315345279 0.0134847670757756 0.237124082421054 2875.599609375;0.223639315345279 0.0134847670757756 0.237124082421054 2875.599609375] [0.047304917126894 0.117760315537453 0.133676931262016] [0.0339078083634377 0.0612933859229088 0.0766269415616989] 0.133676931262016

0.096992090344429

64 1.5 1.5 0.25 [1.66666666666667 1.5 1.33333333333333 1.16666666666667 1] 0.051 [0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501] 0.5 0 2 1 Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5 [0.00895751640200615 0.0492251701653004 0.0480095967650414 0.0582391917705536 0.0656916722655296 0.0734840407967567] [0.0899335203079977 0 0.0899335203079977 0;0.224842689255189 0.0155740346459096 0.240416723901099 7971.958984375;0.222655859218687 0.0176687686250716 0.240324627843759 12716.4248046875;0.199415273929027 0.0204927276002715 0.219908001529299 22096.734375;0.180572152961695 0.0242528684176378 0.204825021379333 42426.828125;0.180572152961695 0.0242528684176378 0.204825021379333 42426.828125] [0.0104680703952909 0.0380734503269196 0.0677712112665176 0.0883238613605499 0.115312434732914 0.123135112226009] [0.00337560311891139 0.0138274794444442 0.0337866358458996 0.0541270896792412 0.0751200392842293 0.0822014883160591] 0.123135112226009

0.0734840407967567

------------------------------------------------------------------------ CAT12.8.1 r2040: 1/1: ./sub-0025996/ses-1/sub-0025996_ses-1_run-1_T1w.n ------------------------------------------------------------------------ SANLM denoising (medium): 44s APP: Rough bias correction: Initialize 5s Estimate background 5s Initial correction 5s Refine background 2s Final correction 4s Final scaling 4s 31s Correct center-of-mass 3s Affine registration 8s SPM preprocessing 1 (estimate 1 - TPM registration): 64s SPM preprocessing 1 (estimate 2): 46s SPM preprocessing 2 (write): Write Segmentation 14s Update Segmentation 16s Update Skull-Stripping 34s Update probability maps 7s 70s Global intensity correction: 13s SANLM denoising after intensity normalization (medium): 20s Fast Optimized Shooting registration 26s Local adaptive segmentation (LASstr=0.50): Prepare maps 3s Prepare partitions 2s Prepare segments (LASmod = 1.12) 12s Estimate local tissue thresholds (WM) 14s Estimate local tissue thresholds (GM) 19s Intensity transformation 0s SANLM denoising after LAS (medium) 35s 89s ROI segmentation (partitioning): Atlas -> subject space 6s Major structures 3s Ventricle detection 10s Blood vessel detection 8s WMH detection (WMHCstr=0.50 > WMHCstr'=0.32) 19s Manual stroke lesion detection 0s Closing of deep structures 1s Side alignment 3s Final corrections 4s 53s Blood vessel correction (BVCstr=0.50): 1s Amap using initial SPM12 segmentations (MRF filter strength 0.06): 28s AMAP peaks: [CSF,GM,WM] = [0.36 0.06,0.68 0.08,0.98 0.05] Final cleanup (gcutstr=0.25): Level 1 cleanup (ROI estimation) 4s Level 1 cleanup (brain masking) 2s Level 2 cleanup (CSF correction) 1s Level 3 cleanup (CSF/WM PVE) 2s 9s Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50): Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii" 1 | 2.50 | 0.0899 0.0000 0.0899 | 32.0000 2 | 2.50 | 0.0878 0.0011 0.0889 | 29.4886 3 | 2.50 | 0.0871 0.0016 0.0887 | 26.9772 4 | 2.50 | 0.0868 0.0018 0.0886 | 24.6107 5 | 2.50 | 0.0865 0.0020 0.0885 | 22.6548 6 | 2.50 | 0.0863 0.0021 0.0883 | 20.6989 7 | 2.50 | 0.0860 0.0021 0.0882 | 18.9688 8 | 2.50 | 0.0858 0.0022 0.0880 | 17.4455 9 | 2.50 | 0.0855 0.0023 0.0878 | 15.9223 10 | 2.50 | 0.0852 0.0024 0.0876 | 14.6627 11 | 2.50 | 0.0849 0.0025 0.0874 | 13.4764 12 | 2.50 | 0.0847 0.0026 0.0872 | 12.3015 13 | 2.50 | 0.0843 0.0027 0.0870 | 11.3776 14 | 2.50 | 0.0841 0.0027 0.0868 | 10.4537 15 | 2.25 | 0.0841 0.0028 0.0869 | 9.5920 16 | 2.25 | 0.0812 0.0042 0.0854 | 8.8725 17 | 2.25 | 0.0801 0.0047 0.0848 | 8.1530 18 | 2.25 | 0.0794 0.0049 0.0843 | 7.5234 19 | 2.25 | 0.0788 0.0051 0.0839 | 6.9630 20 | 2.25 | 0.0783 0.0051 0.0834 | 6.4027 21 | 2.25 | 0.0778 0.0051 0.0830 | 5.9447 22 | 2.25 | 0.0774 0.0052 0.0825 | 5.5083 23 | 2.25 | 0.0769 0.0051 0.0821 | 5.0803 24 | 2.25 | 0.0765 0.0052 0.0817 | 4.7404 25 | 2.25 | 0.0761 0.0052 0.0813 | 4.4005 26 | 2.25 | 0.0757 0.0052 0.0809 | 4.0868 27 | 2.25 | 0.0753 0.0052 0.0805 | 3.8221 28 | 2.25 | 0.0749 0.0052 0.0801 | 3.5574 29 | 2.00 | 0.0766 0.0049 0.0816 | 3.3283 30 | 2.00 | 0.0742 0.0059 0.0801 | 3.1221 43 | 1.75 | 0.0734 0.0031 0.0765 | 1.5785 44 | 1.75 | 0.0681 0.0059 0.0740 | 1.5194 45 | 1.75 | 0.0665 0.0068 0.0733 | 1.4626 57 | 1.50 | 0.0650 0.0049 0.0699 | 1.0900 58 | 1.50 | 0.0613 0.0073 0.0687 | 1.0730 59 | 1.50 | 0.0602 0.0081 0.0683 | 1.0579 Shooting registration with 2.50:-0.25:1.50 mm takes: 154s Prepare output 8s 163s Jacobian determinant (RMS): 0.010 0.038 0.068 0.088 0.115 | 0.123135 Template Matching: 0.090 0.225 0.223 0.199 0.181 | 0.180572 Write result maps: 27s Surface and thickness estimation: lh: Thickness estimation (0.50 mm ): WM distance: 35s CSF distance: 13s PBT2x thickness: 36s 89s Create initial surface 72s Topology correction: 78s Surface refinement: 66s Reduction of surface collisions with optimization: 53s Spherical mapping with areal smoothing 63s Spherical registration 248s rh: Thickness estimation (0.50 mm ): WM distance: 36s CSF distance: 12s PBT2x thickness: 35s 88s Create initial surface 71s Topology correction: 77s Surface refinement: 63s Reduction of surface collisions with optimization: 53s Spherical mapping with areal smoothing 63s Spherical registration 248s Final surface processing results: Average thickness (FS): 2.1703 0.5885 mm Surface intensity / position RMSE: 0.0561 / 0.0589 Euler number / defect number / defect size: 16.0 / 13.5 / 0.47% Display thickness: /var/lib/condor/execute/dir_1039462/ds/XHCUMS/sub-0025996/ses-1/surf/lh.thickness.sub-0025996_ses-1_run-1_T1w Display thickness: /var/lib/condor/execute/dir_1039462/ds/XHCUMS/sub-0025996/ses-1/surf/rh.thickness.sub-0025996_ses-1_run-1_T1w Show surfaces in orthview: /var/lib/condor/execute/dir_1039462/ds/XHCUMS/sub-0025996/ses-1/sub-0025996_ses-1_run-1_T1w.nii Surface ROI estimation: 7s Surface and thickness estimation takes: 1409s ROI estimation in native space: ROI estimation of 'cobra' atlas 7s ROI estimation of 'neuromorphometrics' atlas 25s ROI estimation of 'lpba40' atlas 7s ROI estimation of 'hammers' atlas 18s ROI estimation of 'thalamus' atlas 1s ROI estimation of 'ibsr' atlas 6s ROI estimation of 'aal3' atlas 10s ROI estimation of 'mori' atlas 15s ROI estimation of 'anatomy3' atlas 21s ROI estimation of 'julichbrain' atlas 28s ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 11s ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 20s ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 45s ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 67s ROI estimation of 'Tian_Subcortex_S2_7T' atlas 6s Write results 7s 289s Quality check: 10s Print 'Graphics' figure to: /var/lib/condor/execute/dir_1039462/ds/XHCUMS/sub-0025996/ses-1/report/catreport_sub-0025996_ses-1_run-1_T1w.pdf ------------------------------------------------------------------------ CAT preprocessing takes 41 minute(s) and 8 second(s). Image Quality Rating (IQR): 82.47% (B-) GM volume (GMV): 40.18% (601.04 / 1495.95 ml) GM thickness (GMT): 2.17 0.59 mm Segmentations are saved in /var/lib/condor/execute/dir_1039462/ds/XHCUMS/sub-0025996/ses-1/mri Reports are saved in /var/lib/condor/execute/dir_1039462/ds/XHCUMS/sub-0025996/ses-1/report Labels are saved in /var/lib/condor/execute/dir_1039462/ds/XHCUMS/sub-0025996/ses-1/label ------------------------------------------------------------------------