[1.03973584140122 0.0098867112180284 0.0122473520251281 2.69543946241258;0.00573753476396059 1.11981941755046 0.228510602217437 -24.818772801442;-0.0117796786318381 -0.231460121717066 1.16676629524527 -2.46665727895454;0 0 0 1] [1.03973584140122 0.0098867112180284 0.0122473520251281 2.69543946241258;0.00573753476396059 1.11981941755046 0.228510602217437 -24.818772801442;-0.0117796786318381 -0.231460121717066 1.16676629524527 -2.46665727895454;0 0 0 1] [1 2 3 3 4 4 4 5 5 5 5 6 6] [338.503851767708 423.149422883638 147.040364436142 238.453748183908 208.10369829836 41.3300337855076 95.0947589846025 396.486380462482 870.554997614327 654.152475665324 344.695380279051 224.653095522873 21.4112106732348] [1245.96687948203;230.148709833091;663.244873097881;1761.28242526507;4753.50844935161;318.807251396168;1068.57823153751;9164.51159414719;3779.0942912721;16398.0450359193;1121.92852193694;8863.83605609155;128.870082775385] -5.78623342514038 [2.69543946241258 -24.818772801442 -2.46665727895454] [0.203737601403104 0.00997831915883311 -0.00769590147732766] [1.03981839761957 1.14338001495036 1.18893209301822] [0.0179714168806258 0.000278357550045037 -0.0107499349917832] [2.69543946241258 -24.818772801442 -2.46665727895454] [0.203737601403104 0.00997831915883311 -0.00769590147732766] [1.03981839761957 1.14338001495036 1.18893209301822] [0.0179714168806258 0.000278357550045037 -0.0107499349917832] /var/lib/condor/execute/dir_3396820/ds/XHCUMS/sub-0025995/ses-4 sub-0025995_ses-4_run-1_T1w /var/lib/condor/execute/dir_3396820/ds/XHCUMS/sub-0025995/ses-4/sub-0025995_ses-4_run-1_T1w.nii /var/lib/condor/execute/dir_3396820/ds/XHCUMS/sub-0025995/ses-4/sub-0025995_ses-4_run-1_T1w.nii /var/lib/condor/execute/dir_3396820/ds/XHCUMS/sub-0025995/ses-4/mri/msub-0025995_ses-4_run-1_T1w.nii /var/lib/condor/execute/dir_3396820/ds/XHCUMS/sub-0025995/ses-4/mri/p0sub-0025995_ses-4_run-1_T1w.nii ../XHCUMS/sub-0025995/ses-4/sub-0025995_ses-4_run-1_T1w /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/tpm/TPM.nii [1 1 2 3 4 2] mni [0 0.001 0.5 0.05 0.2] 0.0001 0.5 0.5 0.001 60 3 0 1 0 1.4 2 0.5 0 -Inf 0.5 0.5 0.5 2 0.5 0 1 optimal [1 0.3] ../derivatives/CAT12.8.1_2040 0 1 human 1070 1 1.5 12 Template_T1 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/brainmask.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii 0.5 22 1 2 0 1 5 0 0.7 0.1 BCGWHw 2 1 1 1 0 2 10 1 1 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii 0 gm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii 1 gm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii 1 gm wm [false] /var/lib/condor/execute/dir_3396820/ds/code/Tian_Subcortex_S2_7T.nii 1 gm wm csf [false] Desikan /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot 0 1 Destrieux /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot 0 1 HCP /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot 0 0 Schaefer2018_100P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot 1 0 Schaefer2018_200P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot 0 0 Schaefer2018_400P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot 1 0 Schaefer2018_600P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot 1 0 0 1 3 5 7 9 11 13 13 15 17 19 21 23 25 27 0 0 0 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii 0.5 [1 0.3] 0 pbt2x /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_5_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_6_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii 0 1 1639 30 0.838384282239144 14.5 0.0695994719862938 0.0742467120289803 [0.999999971709276 0.999999971709276 1] [0.999999972060351 0.999999972060351 1] 0.999999981139517 0 [7.15700006484985 137.141006469727 318.988006591797 432.540985107422] [0.0165464095771313 0.317058980464935 0.737474620342255 1] T1 [38.8988997086487 48.8199432484055 39.8437586114236 21.8781360851713] [0.0914442092180252 0.114766769111156 0.0936653986573219 0.0514314994215965] 115.463485717773 0.266942292451859 0.224159240722656 0.154652342200279 0.524847388267517 [1.99999994341855 1.99999994341855 2] 1.99999996227903 2.04162883758545 1 [8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641] [8.624 8.624 8.624 8.624] 0.5 4.07919883728027 2.55113911628723 1.76152634620667 2.42857142857143 1.20959607055979 1.725 1.3919894695282 1.48493421077728 2.30033586138815 2.3787348088308 voxel dimensions RMS error of voxel size normalized gradient slope of the white matter boundary brain next to the image boundary mean within the tissue classes standard deviation within the tissue classes contrast between tissue classes contrast between tissue classes noise to contrast ratio inhomogeneity to contrast ratio average Euler number (characteristic) average area of topological defects average number of defects RMSE of the expected boundary intensity Ym of the IS, OS, and CS RMSE of the expected boundary position Ypp of the IS, OS, and CS Percentual area of self-intersections of the IS and OS. total intracranial volume (GM+WM+VT) relative tissue volume (CSF,GM,WM) relative WMH volume total surface area 1639 LINUX 7771 9.3 12.8.1 2040 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m cat12 20231031-035851 1639 1639 30 0.838384282239144 14.5 0.0695994719862938 0.0742467120289803 30 0.838384282239144 [222.205520916644 597.312829367675 482.734329887888 0 0] 0.686831334169365 0.000527417869532462 1799.96763960615 1302.25268017221 [0.17063164798959 0.458676598222618 0.370691753787792 0 0] [2.38348328629598 0.629936379381665] [2.36868166923523 0.75170462557939 1] [1.78978359073814 0.242250549112837 0.333727446357486;2.42405642742279 0.180141225288086 0.413601796595703;3.08353642921058 0.266130160055734 0.252670757046811] [0.836467356717746 0.263647294361097 0.493301731244847;4.08950172518966 0.385449600209703 0.506698268755153] 1.22427206913684 [0.914361494065912 6.08758258302115 4.5073950033727 0.5 0.5] 1.05274178695325 8.58520851242078 5.0323231179177 [0 1 0 11534.3353473706 0.508386749150519] [false] [0.00150824431329966 0.00131147797219455 0.0269673559814692] [false] [715.572885504483 433.248418927636 392.093409462643 534.106899566245 657.731998540513 9272.86629752499] [619.092498738877 402.312044185751 236.500727960975 482.192529918164 598.657884194475 9196.0822429921] [160.80029296875 329.134490966797 423.413208007812] [-7.40838003158569 -7.40838432312012 4.28499031066895 160.80029296875 329.134490966797 423.413208007812 554.719665527344 1462.34594726562] [0 0.02 0.05 1 2 3 4 5] 16 1.5 3 0.5 [1 1 1 1 1] 0.015 [0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03] 15 0 2 1 Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0 [0.0217070244252682 0.0806831568479538 0.0889695957303047 0 0] [0.0835813146059205 0 0.0835813146059205 0;0.189500037075377 0.011289658380442 0.200789695455819 2407.4970703125;0.189500037075377 0.011289658380442 0.200789695455819 2407.4970703125] [0.0461163073778152 0.103178039193153 0.113704763352871] [0.0328157991170883 0.0461747124791145 0.0562377162277699] 0.113704763352871

0.0889695957303047

64 1.5 1.5 0.25 [1.66666666666667 1.5 1.33333333333333 1.16666666666667 1] 0.051 [0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501] 0.5 0 2 1 Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5 [0.00975606124848127 0.0367130972445011 0.0522448495030403 0.0604530982673168 0.066113606095314 0.074144721031189] [0.0836020782848589 0 0.0836020782848589 0;0.218223565323565 0.0145765415140415 0.232800106837607 7461.3671875;0.194049928999378 0.0177300235958099 0.211779952595187 12760.5107421875;0.172776195964469 0.0195019424018244 0.192278138366293 21028.3984375;0.156348661476557 0.0220484909277887 0.178397152404346 38570.59375;0.156348661476557 0.0220484909277887 0.178397152404346 38570.59375] [0.0114227766171098 0.0420386157929897 0.0627186670899391 0.0871192812919617 0.111121773719788 0.116150379180908] [0.00349599006585777 0.0136962747201324 0.0291765779256821 0.049230769276619 0.0721405223011971 0.0720494315028191] 0.116150379180908

0.074144721031189

------------------------------------------------------------------------ CAT12.8.1 r2040: 1/1: ./sub-0025995/ses-4/sub-0025995_ses-4_run-1_T1w.n ------------------------------------------------------------------------ SANLM denoising (medium): 30s APP: Rough bias correction: Initialize 4s Estimate background 3s Initial correction 3s Refine background 2s Final correction 3s Final scaling 3s 22s Correct center-of-mass 3s Affine registration 5s SPM preprocessing 1 (estimate 1 - TPM registration): 5s Use initial fine affine registration. 34s SPM preprocessing 1 (estimate 2): 35s SPM preprocessing 2 (write): Write Segmentation 10s Update Segmentation 11s Update Skull-Stripping 24s Update probability maps 5s 51s Global intensity correction: 10s SANLM denoising after intensity normalization (medium): 13s Fast Optimized Shooting registration 20s Local adaptive segmentation (LASstr=0.50): Prepare maps 2s Prepare partitions 1s Prepare segments (LASmod = 1.00) 7s Estimate local tissue thresholds (WM) 11s Estimate local tissue thresholds (GM) 15s Intensity transformation 0s SANLM denoising after LAS (medium) 27s 65s ROI segmentation (partitioning): Atlas -> subject space 4s Major structures 2s Ventricle detection 5s Blood vessel detection 5s WMH detection (WMHCstr=0.50 > WMHCstr'=0.05) 11s Manual stroke lesion detection 0s Closing of deep structures 1s Side alignment 2s Final corrections 3s 32s Blood vessel correction (BVCstr=0.50): 1s Amap using initial SPM12 segmentations (MRF filter strength 0.06): 19s AMAP peaks: [CSF,GM,WM] = [0.36 0.06,0.68 0.08,0.98 0.05] Final cleanup (gcutstr=0.25): Level 1 cleanup (ROI estimation) 2s Level 1 cleanup (brain masking) 1s Level 2 cleanup (CSF correction) 1s Level 3 cleanup (CSF/WM PVE) 1s 6s Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50): Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii" 1 | 2.50 | 0.0836 0.0000 0.0836 | 32.0000 2 | 2.50 | 0.0808 0.0012 0.0821 | 29.4886 3 | 2.50 | 0.0800 0.0019 0.0819 | 26.9772 4 | 2.50 | 0.0796 0.0021 0.0817 | 24.6107 5 | 2.50 | 0.0792 0.0023 0.0815 | 22.6548 6 | 2.50 | 0.0789 0.0024 0.0813 | 20.6989 7 | 2.50 | 0.0786 0.0025 0.0811 | 18.9688 8 | 2.50 | 0.0783 0.0026 0.0809 | 17.4455 9 | 2.50 | 0.0780 0.0027 0.0807 | 15.9223 10 | 2.50 | 0.0776 0.0028 0.0804 | 14.6627 11 | 2.50 | 0.0772 0.0029 0.0802 | 13.4764 12 | 2.50 | 0.0769 0.0030 0.0799 | 12.3015 13 | 2.50 | 0.0765 0.0031 0.0796 | 11.3776 14 | 2.50 | 0.0761 0.0032 0.0793 | 10.4537 15 | 2.25 | 0.0759 0.0033 0.0792 | 9.5920 16 | 2.25 | 0.0727 0.0049 0.0776 | 8.8725 29 | 2.00 | 0.0736 0.0022 0.0758 | 3.3283 30 | 2.00 | 0.0670 0.0048 0.0718 | 3.1221 31 | 2.00 | 0.0647 0.0059 0.0706 | 2.9160 43 | 1.75 | 0.0634 0.0034 0.0668 | 1.5785 44 | 1.75 | 0.0590 0.0057 0.0647 | 1.5194 45 | 1.75 | 0.0576 0.0065 0.0641 | 1.4626 57 | 1.50 | 0.0562 0.0047 0.0609 | 1.0900 58 | 1.50 | 0.0531 0.0067 0.0599 | 1.0730 59 | 1.50 | 0.0521 0.0073 0.0595 | 1.0579 Shooting registration with 2.50:-0.25:1.50 mm takes: 97s Prepare output 6s 103s Jacobian determinant (RMS): 0.011 0.042 0.063 0.087 0.111 | 0.116150 Template Matching: 0.084 0.218 0.194 0.173 0.156 | 0.156349 Write result maps: 20s Surface and thickness estimation: lh: Thickness estimation (0.50 mm ): WM distance: 21s CSF distance: 8s PBT2x thickness: 23s 55s Create initial surface 41s Topology correction: 54s Surface refinement: 50s Reduction of surface collisions with optimization: 34s Spherical mapping with areal smoothing 45s Spherical registration 164s rh: Thickness estimation (0.50 mm ): WM distance: 15s CSF distance: 8s PBT2x thickness: 23s 48s Create initial surface 41s Topology correction: 54s Surface refinement: 53s Reduction of surface collisions with optimization: 34s Spherical mapping with areal smoothing 45s Spherical registration 176s Final surface processing results: Average thickness (FS): 2.3834 0.6297 mm Surface intensity / position RMSE: 0.0696 / 0.0742 Euler number / defect number / defect size: 30.0 / 14.5 / 0.84% Display thickness: /var/lib/condor/execute/dir_3396820/ds/XHCUMS/sub-0025995/ses-4/surf/lh.thickness.sub-0025995_ses-4_run-1_T1w Display thickness: /var/lib/condor/execute/dir_3396820/ds/XHCUMS/sub-0025995/ses-4/surf/rh.thickness.sub-0025995_ses-4_run-1_T1w Show surfaces in orthview: /var/lib/condor/execute/dir_3396820/ds/XHCUMS/sub-0025995/ses-4/sub-0025995_ses-4_run-1_T1w.nii Surface ROI estimation: 5s Surface and thickness estimation takes: 948s ROI estimation in native space: ROI estimation of 'cobra' atlas 6s ROI estimation of 'neuromorphometrics' atlas 21s ROI estimation of 'lpba40' atlas 6s ROI estimation of 'hammers' atlas 15s ROI estimation of 'thalamus' atlas 1s ROI estimation of 'ibsr' atlas 5s ROI estimation of 'aal3' atlas 8s ROI estimation of 'mori' atlas 11s ROI estimation of 'anatomy3' atlas 16s ROI estimation of 'julichbrain' atlas 21s ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 9s ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 15s ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 34s ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 51s ROI estimation of 'Tian_Subcortex_S2_7T' atlas 4s Write results 5s 224s Quality check: 6s Print 'Graphics' figure to: /var/lib/condor/execute/dir_3396820/ds/XHCUMS/sub-0025995/ses-4/report/catreport_sub-0025995_ses-4_run-1_T1w.pdf ------------------------------------------------------------------------ CAT preprocessing takes 28 minute(s) and 33 second(s). Image Quality Rating (IQR): 81.21% (B-) GM volume (GMV): 45.87% (597.31 / 1302.25 ml) GM thickness (GMT): 2.38 0.63 mm Segmentations are saved in /var/lib/condor/execute/dir_3396820/ds/XHCUMS/sub-0025995/ses-4/mri Reports are saved in /var/lib/condor/execute/dir_3396820/ds/XHCUMS/sub-0025995/ses-4/report Labels are saved in /var/lib/condor/execute/dir_3396820/ds/XHCUMS/sub-0025995/ses-4/label ------------------------------------------------------------------------