[1.03979266014465 0.0663675899828348 -0.00285885317045653 4.39467649373535;-0.0522774885738485 1.12088434803151 0.203245524472533 -30.6403360208918;0.0162419182402069 -0.208323125386003 1.17232789487356 -1.62167405982637;0 0 0 1] [1.03979266014465 0.0663675899828348 -0.00285885317045653 4.39467649373535;-0.0522774885738485 1.12088434803151 0.203245524472533 -30.6403360208918;0.0162419182402069 -0.208323125386003 1.17232789487356 -1.62167405982637;0 0 0 1] [1 2 3 3 4 4 4 5 5 5 5 6 6] [348.293157078689 435.54649783878 151.11716817101 241.801866350006 220.386460180897 47.3449466547476 106.13647873922 411.666678559231 879.520773974292 652.990021987609 357.548001581082 226.249621398819 22.463174680462] [1441.9597890077;260.16441315025;711.062900428899;1789.7477662027;4614.75218984409;444.987470722125;1303.68412593293;9038.08907655632;6605.11233586808;16358.7487774953;1507.48234810236;9559.48821380058;131.635363496231] -5.83845090866089 [4.39467649373535 -30.6403360208918 -1.62167405982637] [0.184117459932675 -0.00615162129714965 0.0522382694152048] [1.04123268860058 1.14198920554277 1.18971851175202] [0.00648235623822694 0.00502051913069112 -0.0127542375304488] [4.39467649373535 -30.6403360208918 -1.62167405982637] [0.184117459932675 -0.00615162129714965 0.0522382694152048] [1.04123268860058 1.14198920554277 1.18971851175202] [0.00648235623822694 0.00502051913069112 -0.0127542375304488] /var/lib/condor/execute/dir_3396820/ds/XHCUMS/sub-0025995/ses-1 sub-0025995_ses-1_run-1_T1w /var/lib/condor/execute/dir_3396820/ds/XHCUMS/sub-0025995/ses-1/sub-0025995_ses-1_run-1_T1w.nii /var/lib/condor/execute/dir_3396820/ds/XHCUMS/sub-0025995/ses-1/sub-0025995_ses-1_run-1_T1w.nii /var/lib/condor/execute/dir_3396820/ds/XHCUMS/sub-0025995/ses-1/mri/msub-0025995_ses-1_run-1_T1w.nii /var/lib/condor/execute/dir_3396820/ds/XHCUMS/sub-0025995/ses-1/mri/p0sub-0025995_ses-1_run-1_T1w.nii ../XHCUMS/sub-0025995/ses-1/sub-0025995_ses-1_run-1_T1w /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/tpm/TPM.nii [1 1 2 3 4 2] mni [0 0.001 0.5 0.05 0.2] 0.0001 0.5 0.5 0.001 60 3 0 1 0 1.4 2 0.5 0 -Inf 0.5 0.5 0.5 2 0.5 0 1 optimal [1 0.3] ../derivatives/CAT12.8.1_2040 0 1 human 1070 1 1.5 12 Template_T1 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/brainmask.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii 0.5 22 1 2 0 1 5 0 0.7 0.1 BCGWHw 2 1 1 1 0 2 10 1 1 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii 0 gm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii 1 gm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii 1 gm wm [false] /var/lib/condor/execute/dir_3396820/ds/code/Tian_Subcortex_S2_7T.nii 1 gm wm csf [false] Desikan /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot 0 1 Destrieux /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot 0 1 HCP /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot 0 0 Schaefer2018_100P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot 1 0 Schaefer2018_200P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot 0 0 Schaefer2018_400P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot 1 0 Schaefer2018_600P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot 1 0 0 1 3 5 7 9 11 13 13 15 17 19 21 23 25 27 0 0 0 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii 0.5 [1 0.3] 0 pbt2x /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_5_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_6_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii 0 1 1639 28 0.567873968794388 15.5 0.0647249296307564 0.0665052682161331 [0.999999930874814 0.99999998019656 0.99999997537898] [0.999999987440539 0.999999977094433 0.99999997568868] 0.999999962150118 0 [8.8149995803833 140.432998657227 329.006988525391 447.238006591797] [0.0197098627686501 0.314000576734543 0.735641837120056 1] T1 [14.5527927989212 49.3420016029085 41.7138669811748 22.9107614490625] [0.0331934988498688 0.112544283270836 0.0951452478766441 0.0522572062909603] 120.608184814453 0.269673377275467 0.241777837276459 0.15640527009964 0.458208441734314 [1.99999986174963 1.99999996039312 1.99999995075796] 1.99999992430024 2.13151955604553 1 [8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641] [8.624 8.624 8.624 8.624] 0.5 4.03823280334473 2.57630300521851 1.59625101089478 2.3265306122449 1.1419684921986 1.775 1.29449856281281 1.33010530471802 2.33188502322536 2.3993548511819 voxel dimensions RMS error of voxel size normalized gradient slope of the white matter boundary brain next to the image boundary mean within the tissue classes standard deviation within the tissue classes contrast between tissue classes contrast between tissue classes noise to contrast ratio inhomogeneity to contrast ratio average Euler number (characteristic) average area of topological defects average number of defects RMSE of the expected boundary intensity Ym of the IS, OS, and CS RMSE of the expected boundary position Ypp of the IS, OS, and CS Percentual area of self-intersections of the IS and OS. total intracranial volume (GM+WM+VT) relative tissue volume (CSF,GM,WM) relative WMH volume total surface area 1639 LINUX 7771 9.3 12.8.1 2040 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m cat12 20231031-032128 1639 1639 28 0.567873968794388 15.5 0.0647249296307564 0.0665052682161331 28 0.567873968794388 [239.224417072586 574.599306829021 484.607351424098 0 0] 0.523552909880388 0.000403219639324373 1774.13471318886 1298.43107532571 [0.184241136567513 0.442533545097791 0.373225318334696 0 0] [2.35635837851929 0.635045910579248] [2.3281581401825 0.789510381288156 1] [1.74417567359552 0.253381222309875 0.334640653137923;2.38597338479239 0.183948105655672 0.421051882326982;3.070622277452 0.286938147670721 0.244307464535095] [0.818835190617976 0.243307557309478 0.441599477010242;4.13183931829871 0.382484940116678 0.558400522989758] 1.24186497048257 [1.15878478030735 5.79765705994596 4.55289724020647 0.5 0.5] 1.04032196393244 8.57110358166423 4.82186354731381 [0 1 0 11534.3346902803 0.505866502119536] [false] [0.00165599375031888 0.00147594208829105 0.0282668881118298] [false] [700.809914970886 435.542350435456 412.633716510733 543.168453805882 645.488357493493 9273.34775155547] [600.309411174518 402.83759944925 251.355032033737 493.138935227837 592.544125364188 9194.66576802349] [165.14990234375 338.170196533203 436.151306152344] [-7.17824983596802 -7.17824935913086 4.70147895812988 165.14990234375 338.170196533203 436.151306152344 571.651977539062 1400.0654296875] [0 0.02 0.05 1 2 3 4 5] 16 1.5 3 0.5 [1 1 1 1 1] 0.015 [0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03] 15 0 2 1 Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0 [0.0219740774482489 0.0827687457203865 0.0915652438998222 0 0] [0.0853214454727203 0 0.0853214454727203 0;0.193083507817189 0.0117907804601333 0.204874288277323 2514.3603515625;0.193083507817189 0.0117907804601333 0.204874288277323 2514.3603515625] [0.0470463372766972 0.106324769556522 0.117331564426422] [0.0335479825735092 0.0475914813578129 0.0578688830137253] 0.117331564426422

0.0915652438998222

64 1.5 1.5 0.25 [1.66666666666667 1.5 1.33333333333333 1.16666666666667 1] 0.051 [0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501] 0.5 0 2 1 Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5 [0.00998959597200155 0.0376692488789558 0.0538566075265408 0.062224093824625 0.0678541734814644 0.0760219693183899] [0.0854909264991932 0 0.0854909264991932 0;0.223235073260073 0.0151450568528694 0.238380130112943 7752.3759765625;0.198370342060435 0.0183429844376987 0.216713326498134 13201.666015625;0.176582705940616 0.0200073191469778 0.196590025087594 21573.33203125;0.159797704494176 0.0225300528966995 0.182327757390875 39413.015625;0.159797704494176 0.0225300528966995 0.182327757390875 39413.015625] [0.0117104388773441 0.0431663691997528 0.0643144249916077 0.0885768458247185 0.112107425928116 0.116717860102654] [0.00354082533158362 0.0138049125671387 0.0291601680219173 0.0488855354487896 0.0722833573818207 0.0711640119552612] 0.116717860102654

0.0760219693183899

------------------------------------------------------------------------ CAT12.8.1 r2040: 1/1: ./sub-0025995/ses-1/sub-0025995_ses-1_run-1_T1w.n ------------------------------------------------------------------------ SANLM denoising (medium): 31s APP: Rough bias correction: Initialize 4s Estimate background 3s Initial correction 3s Refine background 2s Final correction 3s Final scaling 3s 22s Correct center-of-mass 2s Affine registration 5s SPM preprocessing 1 (estimate 1 - TPM registration): 6s Use initial fine affine registration. 36s SPM preprocessing 1 (estimate 2): 36s SPM preprocessing 2 (write): Write Segmentation 11s Update Segmentation 12s Update Skull-Stripping 25s Update probability maps 6s 53s Global intensity correction: 10s SANLM denoising after intensity normalization (medium): 14s Fast Optimized Shooting registration 21s Local adaptive segmentation (LASstr=0.50): Prepare maps 2s Prepare partitions 1s Prepare segments (LASmod = 1.00) 7s Estimate local tissue thresholds (WM) 11s Estimate local tissue thresholds (GM) 16s Intensity transformation 0s SANLM denoising after LAS (medium) 28s 67s ROI segmentation (partitioning): Atlas -> subject space 4s Major structures 2s Ventricle detection 5s Blood vessel detection 5s WMH detection (WMHCstr=0.50 > WMHCstr'=0.08) 11s Manual stroke lesion detection 0s Closing of deep structures 1s Side alignment 2s Final corrections 3s 32s Blood vessel correction (BVCstr=0.50): 1s Amap using initial SPM12 segmentations (MRF filter strength 0.06): 21s AMAP peaks: [CSF,GM,WM] = [0.36 0.06,0.68 0.08,0.98 0.05] Final cleanup (gcutstr=0.25): Level 1 cleanup (ROI estimation) 2s Level 1 cleanup (brain masking) 2s Level 2 cleanup (CSF correction) 1s Level 3 cleanup (CSF/WM PVE) 2s 6s Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50): Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii" 1 | 2.50 | 0.0855 0.0000 0.0855 | 32.0000 2 | 2.50 | 0.0826 0.0013 0.0839 | 29.4886 3 | 2.50 | 0.0817 0.0019 0.0837 | 26.9772 4 | 2.50 | 0.0813 0.0022 0.0835 | 24.6107 5 | 2.50 | 0.0809 0.0024 0.0833 | 22.6548 6 | 2.50 | 0.0806 0.0025 0.0831 | 20.6989 7 | 2.50 | 0.0803 0.0026 0.0829 | 18.9688 8 | 2.50 | 0.0800 0.0027 0.0827 | 17.4455 9 | 2.50 | 0.0796 0.0028 0.0824 | 15.9223 10 | 2.50 | 0.0792 0.0029 0.0822 | 14.6627 11 | 2.50 | 0.0789 0.0030 0.0819 | 13.4764 12 | 2.50 | 0.0785 0.0031 0.0816 | 12.3015 13 | 2.50 | 0.0781 0.0032 0.0813 | 11.3776 14 | 2.50 | 0.0777 0.0033 0.0810 | 10.4537 15 | 2.25 | 0.0777 0.0034 0.0811 | 9.5920 16 | 2.25 | 0.0744 0.0050 0.0795 | 8.8725 29 | 2.00 | 0.0753 0.0023 0.0776 | 3.3283 30 | 2.00 | 0.0685 0.0050 0.0735 | 3.1221 31 | 2.00 | 0.0661 0.0061 0.0722 | 2.9160 43 | 1.75 | 0.0647 0.0035 0.0682 | 1.5785 44 | 1.75 | 0.0603 0.0059 0.0662 | 1.5194 45 | 1.75 | 0.0589 0.0067 0.0655 | 1.4626 57 | 1.50 | 0.0574 0.0049 0.0622 | 1.0900 58 | 1.50 | 0.0543 0.0069 0.0612 | 1.0730 59 | 1.50 | 0.0533 0.0075 0.0608 | 1.0579 Shooting registration with 2.50:-0.25:1.50 mm takes: 100s Prepare output 6s 106s Jacobian determinant (RMS): 0.012 0.043 0.064 0.089 0.112 | 0.116718 Template Matching: 0.085 0.223 0.198 0.177 0.160 | 0.159798 Write result maps: 21s Surface and thickness estimation: lh: Thickness estimation (0.50 mm ): WM distance: 19s CSF distance: 8s PBT2x thickness: 23s 53s Create initial surface 42s Topology correction: 47s Surface refinement: 41s Reduction of surface collisions with optimization: 34s Spherical mapping with areal smoothing 46s Spherical registration 176s rh: Thickness estimation (0.50 mm ): WM distance: 18s CSF distance: 7s PBT2x thickness: 23s 51s Create initial surface 41s Topology correction: 54s Surface refinement: 42s Reduction of surface collisions with optimization: 33s Spherical mapping with areal smoothing 46s Spherical registration 177s Final surface processing results: Average thickness (FS): 2.3564 0.6350 mm Surface intensity / position RMSE: 0.0647 / 0.0665 Euler number / defect number / defect size: 28.0 / 15.5 / 0.57% Display thickness: /var/lib/condor/execute/dir_3396820/ds/XHCUMS/sub-0025995/ses-1/surf/lh.thickness.sub-0025995_ses-1_run-1_T1w Display thickness: /var/lib/condor/execute/dir_3396820/ds/XHCUMS/sub-0025995/ses-1/surf/rh.thickness.sub-0025995_ses-1_run-1_T1w Show surfaces in orthview: /var/lib/condor/execute/dir_3396820/ds/XHCUMS/sub-0025995/ses-1/sub-0025995_ses-1_run-1_T1w.nii Surface ROI estimation: 5s Surface and thickness estimation takes: 935s ROI estimation in native space: ROI estimation of 'cobra' atlas 6s ROI estimation of 'neuromorphometrics' atlas 21s ROI estimation of 'lpba40' atlas 6s ROI estimation of 'hammers' atlas 15s ROI estimation of 'thalamus' atlas 1s ROI estimation of 'ibsr' atlas 5s ROI estimation of 'aal3' atlas 8s ROI estimation of 'mori' atlas 11s ROI estimation of 'anatomy3' atlas 16s ROI estimation of 'julichbrain' atlas 21s ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 9s ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 16s ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 35s ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 52s ROI estimation of 'Tian_Subcortex_S2_7T' atlas 5s Write results 5s 226s Quality check: 7s Print 'Graphics' figure to: /var/lib/condor/execute/dir_3396820/ds/XHCUMS/sub-0025995/ses-1/report/catreport_sub-0025995_ses-1_run-1_T1w.pdf ------------------------------------------------------------------------ CAT preprocessing takes 28 minute(s) and 36 second(s). Image Quality Rating (IQR): 81.01% (B-) GM volume (GMV): 44.25% (574.60 / 1298.43 ml) GM thickness (GMT): 2.36 0.64 mm Segmentations are saved in /var/lib/condor/execute/dir_3396820/ds/XHCUMS/sub-0025995/ses-1/mri Reports are saved in /var/lib/condor/execute/dir_3396820/ds/XHCUMS/sub-0025995/ses-1/report Labels are saved in /var/lib/condor/execute/dir_3396820/ds/XHCUMS/sub-0025995/ses-1/label ------------------------------------------------------------------------