[1.11743810265831 -0.0448074729275702 -0.0264429672700045 2.53754591306907;0.0768452686046506 1.08364301411606 0.378254499568005 -28.2721054977877;0.0201144720456662 -0.285441123035117 1.14530910210779 9.93370482927511;0 0 0 1] [1.11743810265831 -0.0448074729275702 -0.0264429672700045 2.53754591306907;0.0768452686046506 1.08364301411606 0.378254499568005 -28.2721054977877;0.0201144720456662 -0.285441123035117 1.14530910210779 9.93370482927511;0 0 0 1] [1 2 3 3 4 4 4 5 5 5 5 6 6] [321.51364979999 396.147593817717 142.678187155208 229.048463948681 226.571534363489 28.4090158348915 82.3968372151967 443.232273285489 839.345296133675 662.320820474844 336.023444451086 254.610289978407 24.3915329243778] [977.680031064667;241.014757522502;591.021728328789;1471.23561859021;4540.1291664961;203.945568247193;1035.34751321967;9183.92861721636;2926.29608785364;17216.8638456562;1377.76778502942;9079.48033259691;155.148607532314] -5.83051061630249 [2.53754591306907 -28.2721054977877 9.93370482927511] [0.256165396048878 -0.0348233027450044 -0.0618477287828061] [1.12025787235137 1.12123396336933 1.20396643616758] [0.021882272056199 0.0179732096858827 0.066551133878445] [2.53754591306907 -28.2721054977877 9.93370482927511] [0.256165396048878 -0.0348233027450044 -0.0618477287828061] [1.12025787235137 1.12123396336933 1.20396643616758] [0.021882272056199 0.0179732096858827 0.066551133878445] /var/lib/condor/execute/dir_4034311/ds/XHCUMS/sub-0025985/ses-2 sub-0025985_ses-2_run-1_T1w /var/lib/condor/execute/dir_4034311/ds/XHCUMS/sub-0025985/ses-2/sub-0025985_ses-2_run-1_T1w.nii /var/lib/condor/execute/dir_4034311/ds/XHCUMS/sub-0025985/ses-2/sub-0025985_ses-2_run-1_T1w.nii /var/lib/condor/execute/dir_4034311/ds/XHCUMS/sub-0025985/ses-2/mri/msub-0025985_ses-2_run-1_T1w.nii /var/lib/condor/execute/dir_4034311/ds/XHCUMS/sub-0025985/ses-2/mri/p0sub-0025985_ses-2_run-1_T1w.nii ../XHCUMS/sub-0025985/ses-2/sub-0025985_ses-2_run-1_T1w /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/tpm/TPM.nii [1 1 2 3 4 2] mni [0 0.001 0.5 0.05 0.2] 0.0001 0.5 0.5 0.001 60 3 0 1 0 1.4 2 0.5 0 -Inf 0.5 0.5 0.5 2 0.5 0 1 optimal [1 0.3] ../derivatives/CAT12.8.1_2040 0 1 human 1070 1 1.5 12 Template_T1 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/brainmask.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii 0.5 22 1 2 0 1 5 0 0.7 0.1 BCGWHw 2 1 1 1 0 2 10 1 1 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii 0 gm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii 1 gm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii 1 gm wm [false] /var/lib/condor/execute/dir_4034311/ds/code/Tian_Subcortex_S2_7T.nii 1 gm wm csf [false] Desikan /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot 0 1 Destrieux /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot 0 1 HCP /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot 0 0 Schaefer2018_100P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot 1 0 Schaefer2018_200P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot 0 0 Schaefer2018_400P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot 1 0 Schaefer2018_600P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot 1 0 0 1 3 5 7 9 11 13 13 15 17 19 21 23 25 27 0 0 0 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii 0.5 [1 0.3] 0 pbt2x /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_5_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_6_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii 0 1 1639 22 0.690517879895671 12 0.0625365823507309 0.0655948519706726 [0.999999987498045 0.999999990062909 0.999999980216341] [0.999999929139498 0.999999991382383 0.999999979765892] 0.999999985925765 0 [7.18850040435791 124.581001281738 311.420989990234 410.326995849609] [0.0175189562141895 0.30361396074295 0.758958101272583 1] T1 [9.7621436950595 46.156625235102 36.6745256092458 20.1937513039312] [0.0242153592407703 0.11449322104454 0.0909725204110146 0.0500913485884666] 100.669631958008 0.245340019464493 0.178381502628326 0.145104870200157 0.53098452091217 [1.99999997499609 1.99999998012582 1.99999996043268] 1.99999997185153 1.80806887149811 1 [8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641] [8.624 8.624 8.624 8.624] 0.5 4.40323305130005 2.41408085823059 1.77674734592438 2.02040816326531 1.17262946997392 1.6 1.25073170661926 1.31189703941345 2.17882567825961 2.26988611053224 voxel dimensions RMS error of voxel size normalized gradient slope of the white matter boundary brain next to the image boundary mean within the tissue classes standard deviation within the tissue classes contrast between tissue classes contrast between tissue classes noise to contrast ratio inhomogeneity to contrast ratio average Euler number (characteristic) average area of topological defects average number of defects RMSE of the expected boundary intensity Ym of the IS, OS, and CS RMSE of the expected boundary position Ypp of the IS, OS, and CS Percentual area of self-intersections of the IS and OS. total intracranial volume (GM+WM+VT) relative tissue volume (CSF,GM,WM) relative WMH volume total surface area 1639 LINUX 7771 9.3 12.8.1 2040 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m cat12 20231031-040422 1639 1639 22 0.690517879895671 12 0.0625365823507309 0.0655948519706726 22 0.690517879895671 [244.861477545099 559.534763815381 416.079684001961 0 0] 1.02628617217652 0.000840890140353848 1669.59367908001 1220.47592536244 [0.200627863652766 0.45845620727768 0.340915929069554 0 0] [2.3929575674248 0.627854038221158] [2.39186406135559 0.710125612231826 1] [1.79935091974012 0.239012004277932 0.317294047637213;2.43718132181184 0.177997333413651 0.42884172299617;3.08923234419944 0.265122885657767 0.253864229366617] [0.863361492271723 0.259681342121014 0.522939463909246;3.99808928174804 0.322044344836856 0.477060536090754] 1.73045218702051 [1.45308663169479 6.08362441231465 3.97262803645033 0.5 0.5] 1.08408901403538 8.45539454659358 4.99525287537288 [0 1 0 11534.3355129891 0.515614520650783] [false] [0.00148791365791112 0.00129070121329278 0.0229112785309553] [false] [654.601122963553 385.341290988523 427.675396571217 2521.20475252661 744.892164940824 7528.56811597632] [559.465661861487 354.091756849582 260.962891625866 671.639603617549 707.390462797849 8981.52026521686] [156.700500488281 314.669799804688 396.974792480469] [-6.5610499382019 -6.56104755401611 3.51561498641968 156.700500488281 314.669799804688 396.974792480469 517.111938476562 1245.71240234375] [0 0.02 0.05 1 2 3 4 5] 16 1.5 3 0.5 [1 1 1 1 1] 0.015 [0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03] 15 0 2 1 Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0 [0.0233462061733007 0.0883400067687035 0.0988341197371483 0 0] [0.0896700416006246 0 0.0896700416006246 0;0.200151038198483 0.0132913349055442 0.213442373104027 2834.3505859375;0.200151038198483 0.0132913349055442 0.213442373104027 2834.3505859375] [0.0495933666825294 0.11635734140873 0.129395753145218] [0.0353686548769474 0.0511954762041569 0.0626398026943207] 0.129395753145218

0.0988341197371483

64 1.5 1.5 0.25 [1.66666666666667 1.5 1.33333333333333 1.16666666666667 1] 0.051 [0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501] 0.5 0 2 1 Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5 [0.0102655561640859 0.0408741198480129 0.0557591542601585 0.0646297559142113 0.0710896700620651 0.0801156461238861] [0.0883299292919277 0 0.0883299292919277 0;0.224431639194139 0.0185083962912088 0.242940035485348 9473.9853515625;0.202863176520608 0.0200226575005002 0.222885834021108 14410.546875;0.180123005837117 0.0212769920443311 0.201399997881448 22942.384765625;0.162801654383078 0.0235835673960601 0.186385221779138 41255.984375;0.162801654383078 0.0235835673960601 0.186385221779138 41255.984375] [0.0120319146662951 0.0450309701263905 0.0684688314795494 0.0939724817872047 0.125292718410492 0.124003998935223] [0.00352544779889286 0.013955601491034 0.0305735617876053 0.0506591200828552 0.0943616181612015 0.0731949061155319] 0.124003998935223

0.0801156461238861

------------------------------------------------------------------------ CAT12.8.1 r2040: 1/1: ./sub-0025985/ses-2/sub-0025985_ses-2_run-1_T1w.n ------------------------------------------------------------------------ SANLM denoising (medium): 37s APP: Rough bias correction: Initialize 5s Estimate background 5s Initial correction 4s Refine background 2s Final correction 4s Final scaling 3s 29s Correct center-of-mass 3s Affine registration 7s SPM preprocessing 1 (estimate 1 - TPM registration): 58s SPM preprocessing 1 (estimate 2): 66s SPM preprocessing 2 (write): Write Segmentation 13s Update Segmentation 15s Update Skull-Stripping 33s Update probability maps 7s 67s Global intensity correction: 14s SANLM denoising after intensity normalization (medium): 17s Fast Optimized Shooting registration 26s Local adaptive segmentation (LASstr=0.50): Prepare maps 3s Prepare partitions 2s Prepare segments (LASmod = 1.00) 10s Estimate local tissue thresholds (WM) 14s Estimate local tissue thresholds (GM) 20s Intensity transformation 0s SANLM denoising after LAS (medium) 36s 87s ROI segmentation (partitioning): Atlas -> subject space 5s Major structures 2s Ventricle detection 9s Blood vessel detection 6s WMH detection (WMHCstr=0.50 > WMHCstr'=0.15) 16s Manual stroke lesion detection 0s Closing of deep structures 1s Side alignment 2s Final corrections 4s 46s Blood vessel correction (BVCstr=0.50): 1s Amap using initial SPM12 segmentations (MRF filter strength 0.06): 24s AMAP peaks: [CSF,GM,WM] = [0.36 0.06,0.68 0.08,0.98 0.05] Final cleanup (gcutstr=0.25): Level 1 cleanup (ROI estimation) 3s Level 1 cleanup (brain masking) 2s Level 2 cleanup (CSF correction) 1s Level 3 cleanup (CSF/WM PVE) 2s 8s Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50): Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii" 1 | 2.50 | 0.0883 0.0000 0.0883 | 32.0000 2 | 2.50 | 0.0849 0.0014 0.0863 | 29.4886 3 | 2.50 | 0.0839 0.0022 0.0860 | 26.9772 4 | 2.50 | 0.0833 0.0025 0.0858 | 24.6107 5 | 2.50 | 0.0829 0.0027 0.0856 | 22.6548 6 | 2.50 | 0.0826 0.0028 0.0854 | 20.6989 7 | 2.50 | 0.0822 0.0029 0.0851 | 18.9688 8 | 2.50 | 0.0818 0.0031 0.0849 | 17.4455 9 | 2.50 | 0.0814 0.0032 0.0846 | 15.9223 10 | 2.50 | 0.0810 0.0033 0.0843 | 14.6627 11 | 2.50 | 0.0806 0.0034 0.0840 | 13.4764 12 | 2.50 | 0.0802 0.0035 0.0837 | 12.3015 13 | 2.50 | 0.0798 0.0036 0.0834 | 11.3776 14 | 2.50 | 0.0794 0.0037 0.0831 | 10.4537 15 | 2.25 | 0.0797 0.0038 0.0835 | 9.5920 16 | 2.25 | 0.0762 0.0055 0.0818 | 8.8725 17 | 2.25 | 0.0748 0.0062 0.0810 | 8.1530 29 | 2.00 | 0.0767 0.0028 0.0795 | 3.3283 30 | 2.00 | 0.0700 0.0056 0.0756 | 3.1221 31 | 2.00 | 0.0676 0.0067 0.0743 | 2.9160 43 | 1.75 | 0.0662 0.0039 0.0701 | 1.5785 44 | 1.75 | 0.0616 0.0063 0.0679 | 1.5194 45 | 1.75 | 0.0600 0.0071 0.0671 | 1.4626 57 | 1.50 | 0.0584 0.0052 0.0637 | 1.0900 58 | 1.50 | 0.0553 0.0073 0.0626 | 1.0730 59 | 1.50 | 0.0543 0.0079 0.0621 | 1.0579 Shooting registration with 2.50:-0.25:1.50 mm takes: 136s Prepare output 8s 144s Jacobian determinant (RMS): 0.012 0.045 0.068 0.094 0.125 | 0.124004 Template Matching: 0.088 0.224 0.203 0.180 0.163 | 0.162802 Write result maps: 26s Surface and thickness estimation: lh: Thickness estimation (0.50 mm ): WM distance: 21s CSF distance: 10s PBT2x thickness: 30s 65s Create initial surface 58s Topology correction: 58s Surface refinement: 69s Reduction of surface collisions with optimization: 42s Spherical mapping with areal smoothing 56s Spherical registration 255s rh: Thickness estimation (0.50 mm ): WM distance: 20s CSF distance: 10s PBT2x thickness: 30s 64s Create initial surface 58s Topology correction: 58s Surface refinement: 53s Reduction of surface collisions with optimization: 44s Spherical mapping with areal smoothing 56s Spherical registration 233s Final surface processing results: Average thickness (FS): 2.3929 0.6276 mm Surface intensity / position RMSE: 0.0625 / 0.0656 Euler number / defect number / defect size: 22.0 / 12.0 / 0.69% Display thickness: /var/lib/condor/execute/dir_4034311/ds/XHCUMS/sub-0025985/ses-2/surf/lh.thickness.sub-0025985_ses-2_run-1_T1w Display thickness: /var/lib/condor/execute/dir_4034311/ds/XHCUMS/sub-0025985/ses-2/surf/rh.thickness.sub-0025985_ses-2_run-1_T1w Show surfaces in orthview: /var/lib/condor/execute/dir_4034311/ds/XHCUMS/sub-0025985/ses-2/sub-0025985_ses-2_run-1_T1w.nii Surface ROI estimation: 7s Surface and thickness estimation takes: 1238s ROI estimation in native space: ROI estimation of 'cobra' atlas 7s ROI estimation of 'neuromorphometrics' atlas 25s ROI estimation of 'lpba40' atlas 7s ROI estimation of 'hammers' atlas 18s ROI estimation of 'thalamus' atlas 1s ROI estimation of 'ibsr' atlas 6s ROI estimation of 'aal3' atlas 11s ROI estimation of 'mori' atlas 16s ROI estimation of 'anatomy3' atlas 22s ROI estimation of 'julichbrain' atlas 30s ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 12s ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 21s ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 47s ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 71s ROI estimation of 'Tian_Subcortex_S2_7T' atlas 6s Write results 7s 301s Quality check: 9s Print 'Graphics' figure to: /var/lib/condor/execute/dir_4034311/ds/XHCUMS/sub-0025985/ses-2/report/catreport_sub-0025985_ses-2_run-1_T1w.pdf ------------------------------------------------------------------------ CAT preprocessing takes 38 minute(s) and 2 second(s). Image Quality Rating (IQR): 82.30% (B-) GM volume (GMV): 45.85% (559.53 / 1220.48 ml) GM thickness (GMT): 2.39 0.63 mm Segmentations are saved in /var/lib/condor/execute/dir_4034311/ds/XHCUMS/sub-0025985/ses-2/mri Reports are saved in /var/lib/condor/execute/dir_4034311/ds/XHCUMS/sub-0025985/ses-2/report Labels are saved in /var/lib/condor/execute/dir_4034311/ds/XHCUMS/sub-0025985/ses-2/label ------------------------------------------------------------------------