[1.06259133597217 0.0518150996155402 -0.0350648444656646 -1.77843381308762;-0.0345737645729646 0.995381162158797 0.0808928589741876 -15.4029935804308;0.0380912364205605 -0.0086674086335071 1.09407288100398 -22.560406212316;0 0 0 1] [1.06259133597217 0.0518150996155402 -0.0350648444656646 -1.77843381308762;-0.0345737645729646 0.995381162158797 0.0808928589741876 -15.4029935804308;0.0380912364205605 -0.0086674086335071 1.09407288100398 -22.560406212316;0 0 0 1] [1 2 3 3 4 4 4 5 5 5 5 6 6] [287.335090993587 406.390418176991 106.850919260565 190.338754046742 135.441339116281 33.8933036274447 60.9180280224581 260.093713414681 476.711035013056 364.439107800577 126.862518004017 170.262675409128 32.2618701683308] [1919.41975087375;378.41068482376;1042.93111547451;1837.54389927891;2060.72500458863;102.391929521961;372.69266359271;3405.62074094246;2331.62551333351;10487.3754660202;2068.67769559964;4434.82506974263;129.298959974737] -5.64369201660156 [-1.77843381308762 -15.4029935804308 -22.560406212316] [0.0105554173967277 -0.0354871550882677 0.0328812045240509] [1.06383581194276 0.996583646119686 1.09542053416152] [0.0179492909699239 0.00142984139178639 0.0696657092945994] [-1.77843381308762 -15.4029935804308 -22.560406212316] [0.0105554173967277 -0.0354871550882677 0.0328812045240509] [1.06383581194276 0.996583646119686 1.09542053416152] [0.0179492909699239 0.00142984139178639 0.0696657092945994] /var/lib/condor/execute/dir_110026/ds/UPSM_1/sub-0025322/ses-2 sub-0025322_ses-2_run-1_T1w /var/lib/condor/execute/dir_110026/ds/UPSM_1/sub-0025322/ses-2/sub-0025322_ses-2_run-1_T1w.nii /var/lib/condor/execute/dir_110026/ds/UPSM_1/sub-0025322/ses-2/sub-0025322_ses-2_run-1_T1w.nii /var/lib/condor/execute/dir_110026/ds/UPSM_1/sub-0025322/ses-2/mri/msub-0025322_ses-2_run-1_T1w.nii /var/lib/condor/execute/dir_110026/ds/UPSM_1/sub-0025322/ses-2/mri/p0sub-0025322_ses-2_run-1_T1w.nii ../UPSM_1/sub-0025322/ses-2/sub-0025322_ses-2_run-1_T1w /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/tpm/TPM.nii [1 1 2 3 4 2] mni [0 0.001 0.5 0.05 0.2] 0.0001 0.5 0.5 0.001 60 3 0 1 0 1.4 2 0.5 0 -Inf 0.5 0.5 0.5 2 0.5 0 1 optimal [1 0.3] ../derivatives/CAT12.8.1_2040 0 1 human 1070 1 1.5 12 Template_T1 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/brainmask.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii 0.5 22 1 2 0 1 5 0 0.7 0.1 BCGWHw 2 1 1 1 0 2 10 1 1 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii 0 gm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii 1 gm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii 1 gm wm [false] /var/lib/condor/execute/dir_110026/ds/code/Tian_Subcortex_S2_7T.nii 1 gm wm csf [false] Desikan /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot 0 1 Destrieux /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot 0 1 HCP /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot 0 0 Schaefer2018_100P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot 1 0 Schaefer2018_200P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot 0 0 Schaefer2018_400P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot 1 0 Schaefer2018_600P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot 1 0 0 1 3 5 7 9 11 13 13 15 17 19 21 23 25 27 0 0 0 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii 0.5 [1 0.3] 0 pbt2x /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_5_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_6_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii 0 1 1639 18 0.619952183207105 12 0.0712880790233612 0.0701483562588692 [1 1 1] [1 1 1] 1 197.074279785156 [15.5319995880127 91.197998046875 262.003997802734 416.274993896484] [0.0373118743300438 0.21908113360405 0.62940126657486 1] T1 [11.5820828775078 43.0268970143625 45.7547110826816 29.5482249557095] [0.0289015248417854 0.107367813587189 0.114174701273441 0.0737336054444313] 148.335784912109 0.356340855360031 0.380148112773895 0.150101631879807 0.29944372177124 [2 2 2] 2 2.83749032020569 10.5 [8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641] [8.624 8.624 8.624 8.624] 0.5 2.73822045326233 2.48581171035767 1.20248937606812 1.81632653061224 1.15498804580178 1.6 1.42576158046722 1.40296709537506 2.58145581632544 2.32606239416106 voxel dimensions RMS error of voxel size normalized gradient slope of the white matter boundary brain next to the image boundary mean within the tissue classes standard deviation within the tissue classes contrast between tissue classes contrast between tissue classes noise to contrast ratio inhomogeneity to contrast ratio average Euler number (characteristic) average area of topological defects average number of defects RMSE of the expected boundary intensity Ym of the IS, OS, and CS RMSE of the expected boundary position Ypp of the IS, OS, and CS Percentual area of self-intersections of the IS and OS. total intracranial volume (GM+WM+VT) relative tissue volume (CSF,GM,WM) relative WMH volume total surface area 1639 LINUX 7771 9.3 12.8.1 2040 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m cat12 20231031-020547 1639 1639 18 0.619952183207105 12 0.0712880790233612 0.0701483562588692 18 0.619952183207105 [230.83128627451 791.632368627451 541.10468627451 0 0] 0.911764705882353 0.000583130702938329 2206.4680555293 1563.56834117647 [0.147631082182712 0.506298540191601 0.346070377625687 0 0] [2.54860801500763 0.630956467250368] [2.53102850914001 0.752391465731745 1] [1.92165931581231 0.251758902165913 0.295371806293376;2.55452735975206 0.182649449828015 0.431407485619384;3.23445553215192 0.273773592830045 0.273220708087241] [0.911090499584894 0.324718437470971 0.498925264550265;4.19431552503825 0.346266842443444 0.501074735449735] 1.61150867082455 [0.501276619660771 6.94286171321123 4.06520074758777 0.5 0.5] 1.05831307029383 8.62391436831833 5.68737806419642 [0 1 0 9371.648 0.375765130637161] [false] [0.00167366047389805 0.00103503814898431 0.269570201635361] [false] [941.852129411765 483.6056 412.561298039216 663.398368627451 1547.75574117647 6074.48312941176] [826.576823529412 453.982945098039 232.318364705882 556.027015686274 976.730862745098 6326.12409411765] [108.662399291992 274.773284912109 407.147796630859] [-7.26520013809204 -7.26519632339478 8.64361667633057 108.662399291992 274.773284912109 407.147796630859 556.390502929688 844.194152832031] [0 0.02 0.05 1 2 3 4 5] 16 1.5 3 0.5 [1 1 1 1 1] 0.015 [0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03] 15 0 2 1 Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0 [0.0217591319233179 0.0742502436041832 0.0816649347543716 0 0] [0.0860644611848646 0 0.0860644611848646 0;0.200054887677727 0.0110539165006823 0.21110880417841 2357.2255859375;0.200054887677727 0.0110539165006823 0.21110880417841 2357.2255859375] [0.0470939353108406 0.096656359732151 0.107217110693455] [0.0338191911578178 0.045283954590559 0.0556161291897297] 0.107217110693455

0.0816649347543716

64 1.5 1.5 0.25 [1.66666666666667 1.5 1.33333333333333 1.16666666666667 1] 0.051 [0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501] 0.5 0 2 1 Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5 [0.00983204506337643 0.0374568402767181 0.0510144233703613 0.0609165132045746 0.0681688338518143 0.0763484239578247] [0.0869222920934099 0 0.0869222920934099 0;0.224356608669109 0.0173891101953602 0.241745718864469 8901.05078125;0.207086784366524 0.018915435640402 0.226002220006926 13613.666015625;0.18657482179821 0.0210481518693799 0.20762297366759 22695.6328125;0.169181388061758 0.0245667098957443 0.193748097957502 42975.84765625;0.169181388061758 0.0245667098957443 0.193748097957502 42975.84765625] [0.0115267941728234 0.0413503684103489 0.0635417476296425 0.0897228941321373 0.114692166447639 0.12076223641634] [0.00339692365378141 0.0134157547727227 0.0294981133192778 0.0506105907261372 0.0710122659802437 0.0760595872998238] 0.12076223641634

0.0763484239578247

------------------------------------------------------------------------ CAT12.8.1 r2040: 1/1: ./sub-0025322/ses-2/sub-0025322_ses-2_run-1_T1w.n ------------------------------------------------------------------------ SANLM denoising (medium): 65s APP: Rough bias correction: Initialize 6s Estimate background 7s Initial correction 7s Refine background 3s Final correction 5s Final scaling 6s 41s Correct center-of-mass 4s Affine registration 9s SPM preprocessing 1 (estimate 1 - TPM registration): 88s SPM preprocessing 1 (estimate 2): 97s SPM preprocessing 2 (write): Write Segmentation 19s Update Segmentation 21s Update Skull-Stripping 42s Update probability maps 8s 90s Global intensity correction: 16s SANLM denoising after intensity normalization (medium): 32s Fast Optimized Shooting registration 40s Local adaptive segmentation (LASstr=0.50): Prepare maps 5s Prepare partitions 2s Prepare segments (LASmod = 1.00) 18s Estimate local tissue thresholds (WM) 22s Estimate local tissue thresholds (GM) 36s Intensity transformation 0s SANLM denoising after LAS (medium) 46s 132s ROI segmentation (partitioning): Atlas -> subject space 8s Major structures 4s Ventricle detection 19s Blood vessel detection 13s WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 32s Manual stroke lesion detection 0s Closing of deep structures 2s Side alignment 4s Final corrections 5s 87s Blood vessel correction (BVCstr=0.50): 2s Amap using initial SPM12 segmentations (MRF filter strength 0.05): 40s AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.68 0.08,0.98 0.05] Final cleanup (gcutstr=0.25): Level 1 cleanup (ROI estimation) 6s Level 1 cleanup (brain masking) 3s Level 2 cleanup (CSF correction) 2s Level 3 cleanup (CSF/WM PVE) 4s 15s Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50): Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii" 1 | 2.50 | 0.0869 0.0000 0.0869 | 32.0000 2 | 2.50 | 0.0837 0.0014 0.0851 | 29.4886 3 | 2.50 | 0.0828 0.0021 0.0849 | 26.9772 4 | 2.50 | 0.0824 0.0023 0.0847 | 24.6107 5 | 2.50 | 0.0820 0.0025 0.0845 | 22.6548 6 | 2.50 | 0.0817 0.0026 0.0843 | 20.6989 7 | 2.50 | 0.0814 0.0027 0.0841 | 18.9688 8 | 2.50 | 0.0810 0.0028 0.0838 | 17.4455 9 | 2.50 | 0.0807 0.0029 0.0836 | 15.9223 10 | 2.50 | 0.0803 0.0030 0.0833 | 14.6627 11 | 2.50 | 0.0799 0.0031 0.0830 | 13.4764 12 | 2.50 | 0.0796 0.0032 0.0827 | 12.3015 13 | 2.50 | 0.0792 0.0033 0.0824 | 11.3776 14 | 2.50 | 0.0788 0.0033 0.0821 | 10.4537 15 | 2.25 | 0.0798 0.0034 0.0833 | 9.5920 16 | 2.25 | 0.0762 0.0052 0.0814 | 8.8725 17 | 2.25 | 0.0748 0.0058 0.0806 | 8.1530 29 | 2.00 | 0.0775 0.0027 0.0801 | 3.3283 30 | 2.00 | 0.0712 0.0053 0.0765 | 3.1221 31 | 2.00 | 0.0690 0.0063 0.0753 | 2.9160 43 | 1.75 | 0.0685 0.0036 0.0721 | 1.5785 44 | 1.75 | 0.0638 0.0061 0.0699 | 1.5194 45 | 1.75 | 0.0622 0.0070 0.0692 | 1.4626 57 | 1.50 | 0.0611 0.0051 0.0663 | 1.0900 58 | 1.50 | 0.0576 0.0074 0.0651 | 1.0730 59 | 1.50 | 0.0564 0.0082 0.0646 | 1.0579 Shooting registration with 2.50:-0.25:1.50 mm takes: 202s Prepare output 13s 216s Jacobian determinant (RMS): 0.012 0.041 0.064 0.090 0.115 | 0.120762 Template Matching: 0.087 0.224 0.207 0.187 0.169 | 0.169181 Write result maps: 36s Surface and thickness estimation: lh: Thickness estimation (0.50 mm ): WM distance: 47s CSF distance: 22s PBT2x thickness: 65s 141s Create initial surface 114s Topology correction: 131s Surface refinement: 149s Reduction of surface collisions with optimization: 100s Spherical mapping with areal smoothing 121s Spherical registration 338s rh: Thickness estimation (0.50 mm ): WM distance: 46s CSF distance: 22s PBT2x thickness: 66s 142s Create initial surface 119s Topology correction: 164s Surface refinement: 111s Reduction of surface collisions with optimization: 101s Spherical mapping with areal smoothing 132s Spherical registration 354s Final surface processing results: Average thickness (FS): 2.5486 0.6309 mm Surface intensity / position RMSE: 0.0713 / 0.0701 Euler number / defect number / defect size: 18.0 / 12.0 / 0.62% Display thickness: /var/lib/condor/execute/dir_110026/ds/UPSM_1/sub-0025322/ses-2/surf/lh.thickness.sub-0025322_ses-2_run-1_T1w Display thickness: /var/lib/condor/execute/dir_110026/ds/UPSM_1/sub-0025322/ses-2/surf/rh.thickness.sub-0025322_ses-2_run-1_T1w Show surfaces in orthview: /var/lib/condor/execute/dir_110026/ds/UPSM_1/sub-0025322/ses-2/sub-0025322_ses-2_run-1_T1w.nii Surface ROI estimation: 11s Surface and thickness estimation takes: 2340s ROI estimation in native space: ROI estimation of 'cobra' atlas 8s ROI estimation of 'neuromorphometrics' atlas 29s ROI estimation of 'lpba40' atlas 9s ROI estimation of 'hammers' atlas 21s ROI estimation of 'thalamus' atlas 2s ROI estimation of 'ibsr' atlas 7s ROI estimation of 'aal3' atlas 12s ROI estimation of 'mori' atlas 17s ROI estimation of 'anatomy3' atlas 26s ROI estimation of 'julichbrain' atlas 33s ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 13s ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 23s ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 52s ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 79s ROI estimation of 'Tian_Subcortex_S2_7T' atlas 7s Write results 8s 340s Quality check: 13s Print 'Graphics' figure to: /var/lib/condor/execute/dir_110026/ds/UPSM_1/sub-0025322/ses-2/report/catreport_sub-0025322_ses-2_run-1_T1w.pdf ------------------------------------------------------------------------ CAT preprocessing takes 63 minute(s) and 12 second(s). Image Quality Rating (IQR): 81.74% (B-) GM volume (GMV): 50.63% (791.63 / 1563.57 ml) GM thickness (GMT): 2.55 0.63 mm Segmentations are saved in /var/lib/condor/execute/dir_110026/ds/UPSM_1/sub-0025322/ses-2/mri Reports are saved in /var/lib/condor/execute/dir_110026/ds/UPSM_1/sub-0025322/ses-2/report Labels are saved in /var/lib/condor/execute/dir_110026/ds/UPSM_1/sub-0025322/ses-2/label ------------------------------------------------------------------------