[1.08011413736694 0.118306563381672 -0.0536709843267718 -4.92129174776849;-0.0998199968513756 1.01884426058212 0.134991530781298 -24.2516499569595;0.064368924100877 -0.0705543881504519 1.14148561973843 -43.5912721994303;0 0 0 1] [1.08011413736694 0.118306563381672 -0.0536709843267718 -4.92129174776849;-0.0998199968513756 1.01884426058212 0.134991530781298 -24.2516499569595;0.064368924100877 -0.0705543881504519 1.14148561973843 -43.5912721994303;0 0 0 1] [1 2 3 3 4 4 4 5 5 5 5 6 6] [284.751371033702 394.549841543322 87.5622638362128 172.066793040356 124.364798917104 41.3054225888921 76.7543383607382 311.196312553772 516.4754394206 431.301347893807 229.467544468769 224.200178671738 89.1437966021292] [1672.62332708608;431.685289974617;852.399581861112;1721.79060654862;1381.84727364721;171.044207065473;487.107684703635;2218.87283560584;1606.22854781643;8900.30402946155;3730.96350889385;5859.91108563358;1896.2149408753] -5.67438125610352 [-4.92129174776849 -24.2516499569595 -43.5912721994303] [0.0752185660833105 -0.0524330882816532 0.096202544852011] [1.08662502267398 1.02792264880076 1.14963686945355] [0.0182443182992504 0.00171971317246512 0.0478995408667092] [-4.92129174776849 -24.2516499569595 -43.5912721994303] [0.0752185660833105 -0.0524330882816532 0.096202544852011] [1.08662502267398 1.02792264880076 1.14963686945355] [0.0182443182992504 0.00171971317246512 0.0478995408667092] /var/lib/condor/execute/dir_3468889/ds/UPSM_1/sub-0025299/ses-2 sub-0025299_ses-2_run-1_T1w /var/lib/condor/execute/dir_3468889/ds/UPSM_1/sub-0025299/ses-2/sub-0025299_ses-2_run-1_T1w.nii /var/lib/condor/execute/dir_3468889/ds/UPSM_1/sub-0025299/ses-2/sub-0025299_ses-2_run-1_T1w.nii /var/lib/condor/execute/dir_3468889/ds/UPSM_1/sub-0025299/ses-2/mri/msub-0025299_ses-2_run-1_T1w.nii /var/lib/condor/execute/dir_3468889/ds/UPSM_1/sub-0025299/ses-2/mri/p0sub-0025299_ses-2_run-1_T1w.nii ../UPSM_1/sub-0025299/ses-2/sub-0025299_ses-2_run-1_T1w /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/tpm/TPM.nii [1 1 2 3 4 2] mni [0 0.001 0.5 0.05 0.2] 0.0001 0.5 0.5 0.001 60 3 0 1 0 1.4 2 0.5 0 -Inf 0.5 0.5 0.5 2 0.5 0 1 optimal [1 0.3] ../derivatives/CAT12.8.1_2040 0 1 human 1070 1 1.5 12 Template_T1 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/brainmask.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii 0.5 22 1 2 0 1 5 0 0.7 0.1 BCGWHw 2 1 1 1 0 2 10 1 1 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii 0 gm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii 1 gm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii 1 gm wm [false] /var/lib/condor/execute/dir_3468889/ds/code/Tian_Subcortex_S2_7T.nii 1 gm wm csf [false] Desikan /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot 0 1 Destrieux /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot 0 1 HCP /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot 0 0 Schaefer2018_100P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot 1 0 Schaefer2018_200P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot 0 0 Schaefer2018_400P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot 1 0 Schaefer2018_600P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot 1 0 0 1 3 5 7 9 11 13 13 15 17 19 21 23 25 27 0 0 0 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii 0.5 [1 0.3] 0 pbt2x /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_5_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_6_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii 0 1 1639 34 1.34323478081997 20.5 0.0763650014996529 0.0902096107602119 [0.999999940395355 1 1] [1 1 1] 0.999999980131785 0 [15.9230003356934 85.9209976196289 264.740997314453 413.502014160156] [0.0385076738893986 0.207788586616516 0.640241146087646 1] T1 [9.87314551188329 42.9444208676463 45.0616174772717 30.2775375616224] [0.0248331651091576 0.108014807105064 0.11334003508091 0.0761547684669495] 148.240417480469 0.358499884605408 0.433810353279114 0.185360983014107 0.24116513133049 [1.99999988079071 2 2] 1.99999996026357 3.11127734184265 1 [8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641] [8.624 8.624 8.624 8.624] 0.5 2.70583486557007 2.99197506904602 1.0579491853714 2.63265306122449 1.33580869520499 2.025 1.52730000019073 1.80419218540192 2.91074896841273 2.75709205097499 voxel dimensions RMS error of voxel size normalized gradient slope of the white matter boundary brain next to the image boundary mean within the tissue classes standard deviation within the tissue classes contrast between tissue classes contrast between tissue classes noise to contrast ratio inhomogeneity to contrast ratio average Euler number (characteristic) average area of topological defects average number of defects RMSE of the expected boundary intensity Ym of the IS, OS, and CS RMSE of the expected boundary position Ypp of the IS, OS, and CS Percentual area of self-intersections of the IS and OS. total intracranial volume (GM+WM+VT) relative tissue volume (CSF,GM,WM) relative WMH volume total surface area 1639 LINUX 7771 9.3 12.8.1 2040 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m cat12 20231031-020517 1639 1639 34 1.34323478081997 20.5 0.0763650014996529 0.0902096107602119 34 1.34323478081997 [269.086011764706 693.123588235294 456.975070588235 0 0] 0.858807843137255 0.000605141713362285 1885.84606908493 1419.18467058824 [0.189606058564015 0.488395627855819 0.321998313580166 0 0] [2.60377059193518 0.734314406315101] [2.62439823150635 0.957675119994278 1] [1.79101576941198 0.352664868020339 0.27553335775948;2.63785624961152 0.227660644487656 0.459892910632444;3.4523332177425 0.357906329461094 0.264573731608076] [0.694161267937956 0.206121568928425 0.572585735325058;4.56385810358196 0.280893806893193 0.427414264674942] 1.00876378817572 [1.25513754604913 6.6213295232726 3.63287201113804 0.5 0.5] 1.06051417133623 8.61106754107274 5.4202337250521 [0 1 0 9371.64744140625 0.383151999698199] [false] [0.00133113726042211 0.000933894654735923 0.262768000364304] [false] [821.339803921569 412.347407843137 466.654807843137 637.250898039216 808.409639215686 6784.41679215686] [726.870588235294 383.163960784314 269.710050980392 715.893149019608 726.311258823529 6549.7375254902] [97.6387023925781 275.183410644531 395.302795410156] [-6.48554992675781 -6.48555040359497 7.24834442138672 97.6387023925781 275.183410644531 395.302795410156 544.134826660156 855.356872558594] [0 0.02 0.05 1 2 3 4 5] 16 1.5 3 0.5 [1 1 1 1 1] 0.015 [0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03] 15 0 2 1 Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0 [0.0245622862130404 0.0870955362915993 0.0971615761518478 0 0] [0.0881118377526792 0 0.0881118377526792 0;0.191629508248612 0.0131607502162242 0.204790258464836 2806.50366210938;0.191629508248612 0.0131607502162242 0.204790258464836 2806.50366210938] [0.05050278455019 0.113346226513386 0.126181676983833] [0.0356104485690594 0.0518673993647099 0.0635752528905869] 0.126181676983833

0.0971615761518478

64 1.5 1.5 0.25 [1.66666666666667 1.5 1.33333333333333 1.16666666666667 1] 0.051 [0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501] 0.5 0 2 1 Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5 [0.0115979937836528 0.0447872690856457 0.0602773241698742 0.069879338145256 0.0769266933202744 0.0865793749690056] [0.0886080976850368 0 0.0886080976850368 0;0.220045268620269 0.0210640911172161 0.241109359737485 10782.181640625;0.1973970143613 0.021236380837057 0.218633395198357 15284.078125;0.17496896944834 0.0219079005865403 0.19687687003488 23622.67578125;0.157637405800888 0.0242381955821667 0.181875601383054 42401.16015625;0.157637405800888 0.0242381955821667 0.181875601383054 42401.16015625] [0.0133335627615452 0.0479101836681366 0.0722126811742783 0.0979360565543175 0.121413812041283 0.127746492624283] [0.0037429288495332 0.0148466303944588 0.0317437201738358 0.0520172193646431 0.0697599276900291 0.0745182484388351] 0.127746492624283

0.0865793749690056

------------------------------------------------------------------------ CAT12.8.1 r2040: 1/1: ./sub-0025299/ses-2/sub-0025299_ses-2_run-1_T1w.n ------------------------------------------------------------------------ SANLM denoising (medium): 59s APP: Rough bias correction: Initialize 6s Estimate background 7s Initial correction 7s Refine background 3s Final correction 5s Final scaling 6s 41s Correct center-of-mass 5s Affine registration 9s SPM preprocessing 1 (estimate 1 - TPM registration): 89s SPM preprocessing 1 (estimate 2): 100s SPM preprocessing 2 (write): Write Segmentation 18s Update Segmentation 21s Update Skull-Stripping 43s Update probability maps 9s 91s Global intensity correction: 16s SANLM denoising after intensity normalization (medium): 30s Fast Optimized Shooting registration 38s Local adaptive segmentation (LASstr=0.50): Prepare maps 4s Prepare partitions 2s Prepare segments (LASmod = 1.00) 17s Estimate local tissue thresholds (WM) 21s Estimate local tissue thresholds (GM) 33s Intensity transformation 0s SANLM denoising after LAS (medium) 44s 124s ROI segmentation (partitioning): Atlas -> subject space 7s Major structures 4s Ventricle detection 18s Blood vessel detection 12s WMH detection (WMHCstr=0.50 > WMHCstr'=0.10) 30s Manual stroke lesion detection 0s Closing of deep structures 2s Side alignment 4s Final corrections 5s 82s Blood vessel correction (BVCstr=0.50): 2s Amap using initial SPM12 segmentations (MRF filter strength 0.06): 39s AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.68 0.08,0.98 0.05] Final cleanup (gcutstr=0.25): Level 1 cleanup (ROI estimation) 5s Level 1 cleanup (brain masking) 4s Level 2 cleanup (CSF correction) 2s Level 3 cleanup (CSF/WM PVE) 4s 14s Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50): Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii" 1 | 2.50 | 0.0886 0.0000 0.0886 | 32.0000 2 | 2.50 | 0.0845 0.0016 0.0861 | 29.4886 3 | 2.50 | 0.0833 0.0025 0.0858 | 26.9772 4 | 2.50 | 0.0827 0.0028 0.0855 | 24.6107 5 | 2.50 | 0.0823 0.0030 0.0853 | 22.6548 6 | 2.50 | 0.0819 0.0032 0.0850 | 20.6989 7 | 2.50 | 0.0814 0.0033 0.0847 | 18.9688 8 | 2.50 | 0.0810 0.0035 0.0845 | 17.4455 9 | 2.50 | 0.0806 0.0036 0.0841 | 15.9223 10 | 2.50 | 0.0801 0.0037 0.0838 | 14.6627 11 | 2.50 | 0.0796 0.0038 0.0835 | 13.4764 12 | 2.50 | 0.0792 0.0039 0.0831 | 12.3015 13 | 2.50 | 0.0787 0.0041 0.0827 | 11.3776 14 | 2.50 | 0.0782 0.0041 0.0824 | 10.4537 15 | 2.25 | 0.0793 0.0043 0.0836 | 9.5920 16 | 2.25 | 0.0751 0.0063 0.0814 | 8.8725 17 | 2.25 | 0.0733 0.0070 0.0804 | 8.1530 29 | 2.00 | 0.0749 0.0032 0.0781 | 3.3283 30 | 2.00 | 0.0682 0.0060 0.0742 | 3.1221 31 | 2.00 | 0.0658 0.0071 0.0729 | 2.9160 43 | 1.75 | 0.0646 0.0041 0.0687 | 1.5785 44 | 1.75 | 0.0599 0.0065 0.0664 | 1.5194 45 | 1.75 | 0.0583 0.0073 0.0656 | 1.4626 57 | 1.50 | 0.0568 0.0054 0.0622 | 1.0900 58 | 1.50 | 0.0536 0.0075 0.0611 | 1.0730 59 | 1.50 | 0.0525 0.0081 0.0606 | 1.0579 Shooting registration with 2.50:-0.25:1.50 mm takes: 211s Prepare output 13s 224s Jacobian determinant (RMS): 0.013 0.048 0.072 0.098 0.121 | 0.127746 Template Matching: 0.089 0.220 0.197 0.175 0.158 | 0.157637 Write result maps: 43s Surface and thickness estimation: lh: Thickness estimation (0.50 mm ): WM distance: 42s CSF distance: 19s PBT2x thickness: 59s 128s Create initial surface 105s Topology correction: 110s Surface refinement: 125s Reduction of surface collisions with optimization: 85s Spherical mapping with areal smoothing 150s Spherical registration 346s rh: Thickness estimation (0.50 mm ): WM distance: 37s CSF distance: 19s PBT2x thickness: 58s 122s Create initial surface 107s Topology correction: 110s Surface refinement: 119s Reduction of surface collisions with optimization: 75s Spherical mapping with areal smoothing 101s Spherical registration 353s Final surface processing results: Average thickness (FS): 2.6044 0.7332 mm Surface intensity / position RMSE: 0.0764 / 0.0902 Euler number / defect number / defect size: 34.0 / 20.5 / 1.34% Display thickness: /var/lib/condor/execute/dir_3468889/ds/UPSM_1/sub-0025299/ses-2/surf/lh.thickness.sub-0025299_ses-2_run-1_T1w Display thickness: /var/lib/condor/execute/dir_3468889/ds/UPSM_1/sub-0025299/ses-2/surf/rh.thickness.sub-0025299_ses-2_run-1_T1w Show surfaces in orthview: /var/lib/condor/execute/dir_3468889/ds/UPSM_1/sub-0025299/ses-2/sub-0025299_ses-2_run-1_T1w.nii Surface ROI estimation: 12s Surface and thickness estimation takes: 2153s ROI estimation in native space: ROI estimation of 'cobra' atlas 9s ROI estimation of 'neuromorphometrics' atlas 32s ROI estimation of 'lpba40' atlas 9s ROI estimation of 'hammers' atlas 22s ROI estimation of 'thalamus' atlas 2s ROI estimation of 'ibsr' atlas 8s ROI estimation of 'aal3' atlas 13s ROI estimation of 'mori' atlas 20s ROI estimation of 'anatomy3' atlas 29s ROI estimation of 'julichbrain' atlas 39s ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 15s ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 27s ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 68s ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 87s ROI estimation of 'Tian_Subcortex_S2_7T' atlas 7s Write results 9s 391s Quality check: 14s Print 'Graphics' figure to: /var/lib/condor/execute/dir_3468889/ds/UPSM_1/sub-0025299/ses-2/report/catreport_sub-0025299_ses-2_run-1_T1w.pdf ------------------------------------------------------------------------ CAT preprocessing takes 60 minute(s) and 57 second(s). Image Quality Rating (IQR): 77.43% (C+) GM volume (GMV): 48.84% (693.12 / 1419.18 ml) GM thickness (GMT): 2.60 0.73 mm Segmentations are saved in /var/lib/condor/execute/dir_3468889/ds/UPSM_1/sub-0025299/ses-2/mri Reports are saved in /var/lib/condor/execute/dir_3468889/ds/UPSM_1/sub-0025299/ses-2/report Labels are saved in /var/lib/condor/execute/dir_3468889/ds/UPSM_1/sub-0025299/ses-2/label ------------------------------------------------------------------------