[1.03986164402075 0.0156514515345649 0.00225852018056844 2.88319678007961;-0.000866143814268323 0.993279292843633 0.174575213030601 -31.0771327343231;0.0018491367565483 -0.109307545790205 1.11353477309289 -40.5564579297462;0 0 0 1] [1.03986164402075 0.0156514515345649 0.00225852018056844 2.88319678007961;-0.000866143814268323 0.993279292843633 0.174575213030601 -31.0771327343231;0.0018491367565483 -0.109307545790205 1.11353477309289 -40.5564579297462;0 0 0 1] [1 2 3 3 4 4 4 5 5 5 5 6 6] [315.431403696603 442.709716406678 106.037224370696 210.894909407358 132.26867652361 36.261239113444 67.3753739571442 270.561588824183 374.574888651956 316.736697536182 163.981263827529 54.5250479512834 26.1811209051206] [1946.41826113237;396.659257928951;582.377073205597;2491.43312924164;1861.41469622333;133.815058796094;434.881864214743;5542.71682837987;16463.653878073;2386.14711985451;2934.03516103036;477.754683365592;79.0230054453732] -5.63452625274658 [2.88319678007961 -31.0771327343231 -40.5564579297462] [0.109632361123248 -0.00167644065968007 0.0010225026928107] [1.03986364885854 0.999291165212032 1.12594495183873] [0.0140688670701825 0.00393633104371974 0.0517329713358732] [2.88319678007961 -31.0771327343231 -40.5564579297462] [0.109632361123248 -0.00167644065968007 0.0010225026928107] [1.03986364885854 0.999291165212032 1.12594495183873] [0.0140688670701825 0.00393633104371974 0.0517329713358732] /var/lib/condor/execute/dir_111316/ds/UPSM_1/sub-0025295/ses-2 sub-0025295_ses-2_run-1_T1w /var/lib/condor/execute/dir_111316/ds/UPSM_1/sub-0025295/ses-2/sub-0025295_ses-2_run-1_T1w.nii /var/lib/condor/execute/dir_111316/ds/UPSM_1/sub-0025295/ses-2/sub-0025295_ses-2_run-1_T1w.nii /var/lib/condor/execute/dir_111316/ds/UPSM_1/sub-0025295/ses-2/mri/msub-0025295_ses-2_run-1_T1w.nii /var/lib/condor/execute/dir_111316/ds/UPSM_1/sub-0025295/ses-2/mri/p0sub-0025295_ses-2_run-1_T1w.nii ../UPSM_1/sub-0025295/ses-2/sub-0025295_ses-2_run-1_T1w /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/tpm/TPM.nii [1 1 2 3 4 2] mni [0 0.001 0.5 0.05 0.2] 0.0001 0.5 0.5 0.001 60 3 0 1 0 1.4 2 0.5 0 -Inf 0.5 0.5 0.5 2 0.5 0 1 optimal [1 0.3] ../derivatives/CAT12.8.1_2040 0 1 human 1070 1 1.5 12 Template_T1 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/brainmask.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii 0.5 22 1 2 0 1 5 0 0.7 0.1 BCGWHw 2 1 1 1 0 2 10 1 1 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii 0 gm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii 1 gm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii 1 gm wm [false] /var/lib/condor/execute/dir_111316/ds/code/Tian_Subcortex_S2_7T.nii 1 gm wm csf [false] Desikan /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot 0 1 Destrieux /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot 0 1 HCP /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot 0 0 Schaefer2018_100P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot 1 0 Schaefer2018_200P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot 0 0 Schaefer2018_400P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot 1 0 Schaefer2018_600P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot 1 0 0 1 3 5 7 9 11 13 13 15 17 19 21 23 25 27 0 0 0 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii 0.5 [1 0.3] 0 pbt2x /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_5_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_6_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii 0 1 1639 50 1.42191257745103 23.5 0.0794789493083954 0.0861180126667023 [1 1 1] [1 1 1] 1 193.941940307617 [15.2259998321533 98.5179977416992 288.903991699219 452.364013671875] [0.0336587354540825 0.217784777283669 0.638653814792633 1] T1 [9.56403061704939 53.3793714565833 49.1919951958904 30.3827558096807] [0.0218787454068661 0.122111029922962 0.112531960010529 0.0695038065314293] 162.193710327148 0.358546882867813 0.372684061527252 0.121879369020462 0.307010442018509 [2 2 2] 2 2.79940843582153 10.5 [8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641] [8.624 8.624 8.624 8.624] 0.5 2.70513010025024 2.08066844940186 1.22125601768494 3.44897959183673 1.35547814436276 2.175 1.58957898616791 1.72236025333405 2.48616761238368 2.04311436318691 voxel dimensions RMS error of voxel size normalized gradient slope of the white matter boundary brain next to the image boundary mean within the tissue classes standard deviation within the tissue classes contrast between tissue classes contrast between tissue classes noise to contrast ratio inhomogeneity to contrast ratio average Euler number (characteristic) average area of topological defects average number of defects RMSE of the expected boundary intensity Ym of the IS, OS, and CS RMSE of the expected boundary position Ypp of the IS, OS, and CS Percentual area of self-intersections of the IS and OS. total intracranial volume (GM+WM+VT) relative tissue volume (CSF,GM,WM) relative WMH volume total surface area 1639 LINUX 7771 9.3 12.8.1 2040 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m cat12 20231031-003945 1639 1639 50 1.42191257745103 23.5 0.0794789493083954 0.0861180126667023 50 1.42191257745103 [182.976058823529 827.873458823529 524.277070588235 0 0] 0.478682352941176 0.000311819465970846 2139.36714336858 1535.12658823529 [0.119192814602911 0.539286769682761 0.341520415714328 0 0] [2.66436595747091 0.633655370519271] [2.67846989631653 0.761487511322745 1] [2.04877494449104 0.258863325715422 0.297193523686926;2.70160133967213 0.18384684146338 0.423834518881848;3.36240770518767 0.269580294069784 0.278971957431225] [0.965936006456656 0.353382310053603 0.597539996559436;4.27011444018829 0.322996760766987 0.402460003440564] 1.42284678136205 [0.5 7.53532273137142 3.98348447762801 0.5 0.5] 1.03118194659708 8.6237241836642 6.16681216707732 [0 1 0 9371.648 0.345930476879324] [false] [0.00186702236533165 0.000917217577807605 0.333891659975052] [false] [946.378262745098 470.953690196078 365.693643137255 537.402011764706 1351.49883921569 6309.07908235294] [828.427756862745 444.061239215686 202.20088627451 429.585031372549 1020.97724313725 6446.46562745098] [108.957901000977 302.423889160156 443.359497070312] [-6.95012998580933 -6.95012807846069 9.2078275680542 108.957901000977 302.423889160156 443.359497070312 610.560302734375 1025.94763183594] [0 0.02 0.05 1 2 3 4 5] 16 1.5 3 0.5 [1 1 1 1 1] 0.015 [0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03] 15 0 2 1 Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0 [0.0208979230374098 0.0743861496448517 0.0821332335472107 0 0] [0.0870523807667598 0 0.0870523807667598 0;0.197257693360547 0.0112600246397387 0.208517718000286 2401.177734375;0.197257693360547 0.0112600246397387 0.208517718000286 2401.177734375] [0.0475709177553654 0.0986585542559624 0.110617391765118] [0.0344870463013649 0.0480227097868919 0.0591095201671124] 0.110617391765118

0.0821332335472107

64 1.5 1.5 0.25 [1.66666666666667 1.5 1.33333333333333 1.16666666666667 1] 0.051 [0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501] 0.5 0 2 1 Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5 [0.00942173413932323 0.0344468876719475 0.0485139191150665 0.0572308301925659 0.0644834935665131 0.0723004341125488] [0.0861064144829185 0 0.0861064144829185 0;0.217190155677656 0.0169611874236874 0.234151343101343 8682.0078125;0.19457483514239 0.0184153359694572 0.212990171111848 13253.73828125;0.175317284275211 0.0196804760301668 0.194997760305377 21220.90625;0.159505149903993 0.0226468259800909 0.182151975884084 39617.29296875;0.159505149903993 0.0226468259800909 0.182151975884084 39617.29296875] [0.0110398586839437 0.0397795140743256 0.0601066723465919 0.0859806016087532 0.111380904912949 0.11913151293993] [0.00356602156534791 0.0136557593941689 0.0296657271683216 0.0514248050749302 0.0721170380711555 0.0788277313113213] 0.11913151293993

0.0723004341125488

------------------------------------------------------------------------ CAT12.8.1 r2040: 1/1: ./sub-0025295/ses-2/sub-0025295_ses-2_run-1_T1w.n ------------------------------------------------------------------------ SANLM denoising (medium): 63s APP: Rough bias correction: Initialize 6s Estimate background 7s Initial correction 7s Refine background 3s Final correction 7s Final scaling 6s 43s Correct center-of-mass 5s Affine registration 10s SPM preprocessing 1 (estimate 1 - TPM registration): 87s SPM preprocessing 1 (estimate 2): 89s SPM preprocessing 2 (write): Write Segmentation 19s Update Segmentation 23s Update Skull-Stripping 43s Update probability maps 8s 93s Global intensity correction: 15s SANLM denoising after intensity normalization (medium): 34s Fast Optimized Shooting registration 38s Local adaptive segmentation (LASstr=0.50): Prepare maps 4s Prepare partitions 2s Prepare segments (LASmod = 1.00) 18s Estimate local tissue thresholds (WM) 22s Estimate local tissue thresholds (GM) 36s Intensity transformation 0s SANLM denoising after LAS (medium) 45s 130s ROI segmentation (partitioning): Atlas -> subject space 8s Major structures 4s Ventricle detection 19s Blood vessel detection 12s WMH detection (WMHCstr=0.50 > WMHCstr'=0.02) 33s Manual stroke lesion detection 0s Closing of deep structures 2s Side alignment 4s Final corrections 4s 86s Blood vessel correction (BVCstr=0.50): 2s Amap using initial SPM12 segmentations (MRF filter strength 0.05): 39s AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.68 0.07,0.98 0.05] Final cleanup (gcutstr=0.25): Level 1 cleanup (ROI estimation) 5s Level 1 cleanup (brain masking) 3s Level 2 cleanup (CSF correction) 2s Level 3 cleanup (CSF/WM PVE) 3s 14s Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50): Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii" 1 | 2.50 | 0.0861 0.0000 0.0861 | 32.0000 2 | 2.50 | 0.0818 0.0016 0.0835 | 29.4886 3 | 2.50 | 0.0806 0.0025 0.0831 | 26.9772 4 | 2.50 | 0.0801 0.0028 0.0828 | 24.6107 5 | 2.50 | 0.0796 0.0030 0.0826 | 22.6548 6 | 2.50 | 0.0792 0.0031 0.0823 | 20.6989 7 | 2.50 | 0.0788 0.0032 0.0820 | 18.9688 8 | 2.50 | 0.0784 0.0033 0.0817 | 17.4455 9 | 2.50 | 0.0780 0.0034 0.0814 | 15.9223 10 | 2.50 | 0.0776 0.0035 0.0811 | 14.6627 11 | 2.50 | 0.0772 0.0036 0.0808 | 13.4764 12 | 2.50 | 0.0768 0.0036 0.0804 | 12.3015 13 | 2.50 | 0.0763 0.0037 0.0801 | 11.3776 14 | 2.50 | 0.0759 0.0038 0.0797 | 10.4537 15 | 2.25 | 0.0760 0.0039 0.0799 | 9.5920 16 | 2.25 | 0.0724 0.0057 0.0781 | 8.8725 29 | 2.00 | 0.0736 0.0025 0.0761 | 3.3283 30 | 2.00 | 0.0670 0.0052 0.0722 | 3.1221 31 | 2.00 | 0.0649 0.0061 0.0710 | 2.9160 43 | 1.75 | 0.0641 0.0035 0.0676 | 1.5785 44 | 1.75 | 0.0598 0.0058 0.0656 | 1.5194 45 | 1.75 | 0.0584 0.0066 0.0650 | 1.4626 57 | 1.50 | 0.0573 0.0048 0.0622 | 1.0900 58 | 1.50 | 0.0542 0.0069 0.0611 | 1.0730 59 | 1.50 | 0.0532 0.0075 0.0607 | 1.0579 Shooting registration with 2.50:-0.25:1.50 mm takes: 208s Prepare output 13s 221s Jacobian determinant (RMS): 0.011 0.040 0.060 0.086 0.111 | 0.119132 Template Matching: 0.086 0.217 0.195 0.175 0.160 | 0.159505 Write result maps: 35s Surface and thickness estimation: lh: Thickness estimation (0.50 mm ): WM distance: 41s CSF distance: 22s PBT2x thickness: 63s 133s Create initial surface 106s Topology correction: 127s Surface refinement: 148s Reduction of surface collisions with optimization: 101s Spherical mapping with areal smoothing 119s Spherical registration 322s rh: Thickness estimation (0.50 mm ): WM distance: 35s CSF distance: 21s PBT2x thickness: 63s 126s Create initial surface 106s Topology correction: 124s Surface refinement: 138s Reduction of surface collisions with optimization: 98s Spherical mapping with areal smoothing 124s Spherical registration 364s Final surface processing results: Average thickness (FS): 2.6644 0.6333 mm Surface intensity / position RMSE: 0.0795 / 0.0861 Euler number / defect number / defect size: 50.0 / 23.5 / 1.42% Display thickness: /var/lib/condor/execute/dir_111316/ds/UPSM_1/sub-0025295/ses-2/surf/lh.thickness.sub-0025295_ses-2_run-1_T1w Display thickness: /var/lib/condor/execute/dir_111316/ds/UPSM_1/sub-0025295/ses-2/surf/rh.thickness.sub-0025295_ses-2_run-1_T1w Show surfaces in orthview: /var/lib/condor/execute/dir_111316/ds/UPSM_1/sub-0025295/ses-2/sub-0025295_ses-2_run-1_T1w.nii Surface ROI estimation: 12s Surface and thickness estimation takes: 2258s ROI estimation in native space: ROI estimation of 'cobra' atlas 9s ROI estimation of 'neuromorphometrics' atlas 36s ROI estimation of 'lpba40' atlas 10s ROI estimation of 'hammers' atlas 25s ROI estimation of 'thalamus' atlas 2s ROI estimation of 'ibsr' atlas 9s ROI estimation of 'aal3' atlas 14s ROI estimation of 'mori' atlas 21s ROI estimation of 'anatomy3' atlas 30s ROI estimation of 'julichbrain' atlas 40s ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 16s ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 28s ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 61s ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 88s ROI estimation of 'Tian_Subcortex_S2_7T' atlas 7s Write results 9s 399s Quality check: 13s Print 'Graphics' figure to: /var/lib/condor/execute/dir_111316/ds/UPSM_1/sub-0025295/ses-2/report/catreport_sub-0025295_ses-2_run-1_T1w.pdf ------------------------------------------------------------------------ CAT preprocessing takes 62 minute(s) and 46 second(s). Image Quality Rating (IQR): 84.57% (B) GM volume (GMV): 53.93% (827.87 / 1535.13 ml) GM thickness (GMT): 2.66 0.63 mm Segmentations are saved in /var/lib/condor/execute/dir_111316/ds/UPSM_1/sub-0025295/ses-2/mri Reports are saved in /var/lib/condor/execute/dir_111316/ds/UPSM_1/sub-0025295/ses-2/report Labels are saved in /var/lib/condor/execute/dir_111316/ds/UPSM_1/sub-0025295/ses-2/label ------------------------------------------------------------------------