[1.03301778412125 0.0112034480992732 -0.0331548066984844 -2.95776304961133;-0.00576065875607064 1.01594172682001 0.385004817753507 -19.6756045238568;0.0428584674578788 -0.397582373882919 1.1070979267196 -8.5224456574309;0 0 0 1] [1.03301778412125 0.0112034480992732 -0.0331548066984844 -2.95776304961133;-0.00576065875607064 1.01594172682001 0.385004817753507 -19.6756045238568;0.0428584674578788 -0.397582373882919 1.1070979267196 -8.5224456574309;0 0 0 1] [1 2 3 3 4 4 4 5 5 5 5 6 6] [252.080425868389 342.201535642831 84.1253936062809 157.630736800144 238.939312383793 48.4938517772001 107.055349120735 335.158703533754 566.593770038259 421.182586520392 240.942128301189 184.051997061059 36.3518096982042] [1208.23957012283;286.510464668982;538.569921029808;1742.32640253802;5056.1199219427;159.152259129158;1567.22434917047;5809.78667333088;2631.24831455736;13375.2627178964;1216.75718567869;4737.12627281023;120.238618949964] -5.6486554145813 [-2.95776304961133 -19.6756045238568 -8.5224456574309] [0.373397640576482 -0.0365792263846713 0.0203101403095984] [1.03392251921163 1.09096975440544 1.17168295656889] [-0.0105883521376513 0.0102723831011498 -0.0414003673926977] [-2.95776304961133 -19.6756045238568 -8.5224456574309] [0.373397640576482 -0.0365792263846713 0.0203101403095984] [1.03392251921163 1.09096975440544 1.17168295656889] [-0.0105883521376513 0.0102723831011498 -0.0414003673926977] /var/lib/condor/execute/dir_3556103/ds/UM/sub-0026189/ses-2 sub-0026189_ses-2_run-1_T1w /var/lib/condor/execute/dir_3556103/ds/UM/sub-0026189/ses-2/sub-0026189_ses-2_run-1_T1w.nii /var/lib/condor/execute/dir_3556103/ds/UM/sub-0026189/ses-2/sub-0026189_ses-2_run-1_T1w.nii /var/lib/condor/execute/dir_3556103/ds/UM/sub-0026189/ses-2/mri/msub-0026189_ses-2_run-1_T1w.nii /var/lib/condor/execute/dir_3556103/ds/UM/sub-0026189/ses-2/mri/p0sub-0026189_ses-2_run-1_T1w.nii ..3/ds/UM/sub-0026189/ses-2/sub-0026189_ses-2_run-1_T1w /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/tpm/TPM.nii [1 1 2 3 4 2] mni [0 0.001 0.5 0.05 0.2] 0.0001 0.5 0.5 0.001 60 3 0 1 0 1.4 2 0.5 0 -Inf 0.5 0.5 0.5 2 0.5 0 1 optimal [1 0.3] ../derivatives/CAT12.8.1_2040 0 1 human 1070 1 1.5 12 Template_T1 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/brainmask.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii 0.5 22 1 2 0 1 5 0 0.7 0.1 BCGWHw 2 1 1 1 0 2 10 1 1 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii 0 gm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii 1 gm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii 1 gm wm [false] /var/lib/condor/execute/dir_3556103/ds/code/Tian_Subcortex_S2_7T.nii 1 gm wm csf [false] Desikan /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot 0 1 Destrieux /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot 0 1 HCP /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot 0 0 Schaefer2018_100P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot 1 0 Schaefer2018_200P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot 0 0 Schaefer2018_400P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot 1 0 Schaefer2018_600P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot 1 0 0 1 3 5 7 9 11 13 13 15 17 19 21 23 25 27 0 0 0 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii 0.5 [1 0.3] 0 pbt2x /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_5_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_6_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii 0 1 1639 18 0.476836043085162 15.5 0.0626756325364113 0.0609335899353027 [0.99999994225197 0.999999961873259 0.999999980848735] [1.00000000016127 0.999999960835745 0.999999981403096] 0.999999961657988 0 [0 81.3850021362305 229.610000610352 352.679992675781] [0 0.230761602520943 0.651043474674225 1] T1 [10.3366973004942 38.205440154911 38.4610581854749 24.5020553408332] [0.0293089989572763 0.10832891613245 0.109053701162338 0.0694738999009132] 123.06999206543 0.348956555128098 0.404179990291595 0.20141389966011 0.30087074637413 [1.99999988450394 1.99999992374652 1.99999996169747] 1.99999992331598 2.96010184288025 1 [1.89584374427795 8.62400054931641 8.62400054931641 8.62400054931641] [8.624 8.624 8.624 8.624] 0.5 2.84898495674133 3.22242164611816 1.20602869987488 1.81632653061224 1.11920901077129 1.775 1.2535126209259 1.21867179870605 2.96205571595137 2.96302927928924 voxel dimensions RMS error of voxel size normalized gradient slope of the white matter boundary brain next to the image boundary mean within the tissue classes standard deviation within the tissue classes contrast between tissue classes contrast between tissue classes noise to contrast ratio inhomogeneity to contrast ratio average Euler number (characteristic) average area of topological defects average number of defects RMSE of the expected boundary intensity Ym of the IS, OS, and CS RMSE of the expected boundary position Ypp of the IS, OS, and CS Percentual area of self-intersections of the IS and OS. total intracranial volume (GM+WM+VT) relative tissue volume (CSF,GM,WM) relative WMH volume total surface area 1639 LINUX 7771 9.3 12.8.1 2040 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m cat12 20231031-014849 1639 1639 18 0.476836043085162 15.5 0.0626756325364113 0.0609335899353027 18 0.476836043085162 [304.62835500246 637.622931900441 470.285619970424 0 0] 1.80380773923813 0.00127699866138782 1872.28082827345 1412.53690687332 [0.215660457096842 0.451402670470275 0.332936872432883 0 0] [2.36607995331347 0.633495614622561] [2.33374428749084 0.811756847062832 1] [1.74522402114517 0.28188634642396 0.329228032824438;2.38865573595659 0.185848687591751 0.437908452696967;3.09726417203081 0.294427783518487 0.232863514478595] [0.790688087913798 0.212806900604368 0.459923257301215;4.1907989107365 0.382202759283893 0.540076742698785] 1.00374375187644 [1.72306855418178 5.95694451275637 3.82932601352161 0.5 0.5] 1.12769986613878 8.60851070782758 4.88894623755377 [0 1 0 10813.4387561729 0.407415999373403] [false] [0.00130932487081736 0.00118669820949435 0.0372160002589226] [false] [749.927599941508 428.98569293753 536.78694555172 1163.98639962118 904.428606728542 7750.94296531125] [641.909747339795 400.063325976005 325.363475376747 642.383892410524 770.174339951769 8035.77839204202] [96.3088989257812 242.364395141602 343.228790283203] [-4.9480299949646 -4.94803285598755 5.11292886734009 96.3088989257812 242.364395141602 343.228790283203 466.688720703125 820.860290527344] [0 0.02 0.05 1 2 3 4 5] 16 1.5 3 0.5 [1 1 1 1 1] 0.015 [0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03] 15 0 2 1 Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0 [0.0214925836771727 0.0812770202755928 0.0917816609144211 0 0] [0.0916186420857405 0 0.0916186420857405 0;0.215921243985876 0.0125964234570781 0.228517667442954 2686.162109375;0.215921243985876 0.0125964234570781 0.228517667442954 2686.162109375] [0.0454702861607075 0.114372350275517 0.128126308321953] [0.0320693552494049 0.0530108585953712 0.0651663914322853] 0.128126308321953

0.0917816609144211

64 1.5 1.5 0.25 [1.66666666666667 1.5 1.33333333333333 1.16666666666667 1] 0.051 [0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501] 0.5 0 2 1 Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5 [0.0096913781017065 0.0470604710280895 0.0492150150239468 0.0597478486597538 0.0675847381353378 0.0772967711091042] [0.0907812338697847 0 0.0907812338697847 0;0.224840155677656 0.0174950988247863 0.242335254502442 8955.3037109375;0.220316642281913 0.0181660663397303 0.238482708621643 13074.3359375;0.19626145756822 0.0208787112041303 0.217140168772351 22512.9296875;0.177565612829429 0.0244013831470835 0.201966995976512 42686.6328125;0.177565612829429 0.0244013831470835 0.201966995976512 42686.6328125] [0.0120783466845751 0.0438569188117981 0.073342353105545 0.0954233258962631 0.123441897332668 0.131076365709305] [0.00338105810806155 0.0135296946391463 0.0311368089169264 0.0513053499162197 0.0727225244045258 0.0788816064596176] 0.131076365709305

0.0772967711091042

------------------------------------------------------------------------ CAT12.8.1 r2040: 1/1: ./sub-0026189/ses-2/sub-0026189_ses-2_run-1_T1w.n ------------------------------------------------------------------------ SANLM denoising (medium): 38s APP: Rough bias correction: Initialize 4s Estimate background 4s Initial correction 4s Refine background 2s Final correction 4s Final scaling 4s 27s Correct center-of-mass 3s Affine registration 8s SPM preprocessing 1 (estimate 1 - TPM registration): 58s SPM preprocessing 1 (estimate 2): 41s SPM preprocessing 2 (write): Write Segmentation 12s Update Segmentation 14s Update Skull-Stripping 31s Update probability maps 7s 64s Global intensity correction: 12s SANLM denoising after intensity normalization (medium): 18s Fast Optimized Shooting registration 25s Local adaptive segmentation (LASstr=0.50): Prepare maps 3s Prepare partitions 2s Prepare segments (LASmod = 1.15) 10s Estimate local tissue thresholds (WM) 13s Estimate local tissue thresholds (GM) 19s Intensity transformation 0s SANLM denoising after LAS (medium) 28s 77s ROI segmentation (partitioning): Atlas -> subject space 6s Major structures 2s Ventricle detection 9s Blood vessel detection 6s WMH detection (WMHCstr=0.50 > WMHCstr'=0.18) 14s Manual stroke lesion detection 0s Closing of deep structures 1s Side alignment 2s Final corrections 4s 45s Blood vessel correction (BVCstr=0.50): 1s Amap using initial SPM12 segmentations (MRF filter strength 0.05): 26s AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.68 0.08,0.98 0.05] Final cleanup (gcutstr=0.25): Level 1 cleanup (ROI estimation) 3s Level 1 cleanup (brain masking) 2s Level 2 cleanup (CSF correction) 1s Level 3 cleanup (CSF/WM PVE) 2s 8s Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50): Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii" 1 | 2.50 | 0.0908 0.0000 0.0908 | 32.0000 2 | 2.50 | 0.0882 0.0012 0.0894 | 29.4886 3 | 2.50 | 0.0874 0.0018 0.0892 | 26.9772 4 | 2.50 | 0.0870 0.0021 0.0891 | 24.6107 5 | 2.50 | 0.0867 0.0022 0.0889 | 22.6548 6 | 2.50 | 0.0864 0.0023 0.0887 | 20.6989 7 | 2.50 | 0.0861 0.0024 0.0886 | 18.9688 8 | 2.50 | 0.0858 0.0025 0.0884 | 17.4455 9 | 2.50 | 0.0855 0.0026 0.0881 | 15.9223 10 | 2.50 | 0.0852 0.0027 0.0879 | 14.6627 11 | 2.50 | 0.0849 0.0028 0.0877 | 13.4764 12 | 2.50 | 0.0845 0.0029 0.0875 | 12.3015 13 | 2.50 | 0.0842 0.0030 0.0872 | 11.3776 14 | 2.50 | 0.0839 0.0031 0.0870 | 10.4537 15 | 2.25 | 0.0841 0.0032 0.0873 | 9.5920 16 | 2.25 | 0.0807 0.0048 0.0856 | 8.8725 17 | 2.25 | 0.0794 0.0054 0.0848 | 8.1530 18 | 2.25 | 0.0785 0.0057 0.0842 | 7.5234 19 | 2.25 | 0.0779 0.0058 0.0837 | 6.9630 20 | 2.25 | 0.0773 0.0058 0.0832 | 6.4027 21 | 2.25 | 0.0768 0.0059 0.0827 | 5.9447 22 | 2.25 | 0.0763 0.0059 0.0822 | 5.5083 23 | 2.25 | 0.0758 0.0058 0.0817 | 5.0803 24 | 2.25 | 0.0754 0.0059 0.0812 | 4.7404 25 | 2.25 | 0.0749 0.0058 0.0808 | 4.4005 29 | 2.00 | 0.0767 0.0045 0.0813 | 3.3283 30 | 2.00 | 0.0734 0.0061 0.0795 | 3.1221 43 | 1.75 | 0.0722 0.0033 0.0756 | 1.5785 44 | 1.75 | 0.0671 0.0060 0.0731 | 1.5194 45 | 1.75 | 0.0654 0.0070 0.0724 | 1.4626 57 | 1.50 | 0.0639 0.0051 0.0689 | 1.0900 58 | 1.50 | 0.0604 0.0074 0.0678 | 1.0730 59 | 1.50 | 0.0592 0.0081 0.0673 | 1.0579 Shooting registration with 2.50:-0.25:1.50 mm takes: 147s Prepare output 7s 154s Jacobian determinant (RMS): 0.012 0.044 0.073 0.095 0.123 | 0.131076 Template Matching: 0.091 0.225 0.220 0.196 0.178 | 0.177566 Write result maps: 28s Surface and thickness estimation: lh: Thickness estimation (0.50 mm ): WM distance: 23s CSF distance: 12s PBT2x thickness: 31s 70s Create initial surface 59s Topology correction: 68s Surface refinement: 57s Reduction of surface collisions with optimization: 47s Spherical mapping with areal smoothing 65s Spherical registration 202s rh: Thickness estimation (0.50 mm ): WM distance: 20s CSF distance: 11s PBT2x thickness: 30s 66s Create initial surface 54s Topology correction: 67s Surface refinement: 65s Reduction of surface collisions with optimization: 43s Spherical mapping with areal smoothing 73s Spherical registration 219s Final surface processing results: Average thickness (FS): 2.3660 0.6334 mm Surface intensity / position RMSE: 0.0627 / 0.0609 Euler number / defect number / defect size: 18.0 / 15.5 / 0.48% Display thickness: /var/lib/condor/execute/dir_3556103/ds/UM/sub-0026189/ses-2/surf/lh.thickness.sub-0026189_ses-2_run-1_T1w Display thickness: /var/lib/condor/execute/dir_3556103/ds/UM/sub-0026189/ses-2/surf/rh.thickness.sub-0026189_ses-2_run-1_T1w Show surfaces in orthview: /var/lib/condor/execute/dir_3556103/ds/UM/sub-0026189/ses-2/sub-0026189_ses-2_run-1_T1w.nii Surface ROI estimation: 7s Surface and thickness estimation takes: 1227s ROI estimation in native space: ROI estimation of 'cobra' atlas 7s ROI estimation of 'neuromorphometrics' atlas 24s ROI estimation of 'lpba40' atlas 8s ROI estimation of 'hammers' atlas 19s ROI estimation of 'thalamus' atlas 2s ROI estimation of 'ibsr' atlas 7s ROI estimation of 'aal3' atlas 11s ROI estimation of 'mori' atlas 15s ROI estimation of 'anatomy3' atlas 21s ROI estimation of 'julichbrain' atlas 29s ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 17s ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 27s ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 53s ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 79s ROI estimation of 'Tian_Subcortex_S2_7T' atlas 8s Write results 9s 327s Quality check: 9s Print 'Graphics' figure to: /var/lib/condor/execute/dir_3556103/ds/UM/sub-0026189/ses-2/report/catreport_sub-0026189_ses-2_run-1_T1w.pdf ------------------------------------------------------------------------ CAT preprocessing takes 37 minute(s) and 57 second(s). Image Quality Rating (IQR): 75.37% (C) GM volume (GMV): 45.14% (637.62 / 1412.54 ml) GM thickness (GMT): 2.37 0.63 mm Segmentations are saved in /var/lib/condor/execute/dir_3556103/ds/UM/sub-0026189/ses-2/mri Reports are saved in /var/lib/condor/execute/dir_3556103/ds/UM/sub-0026189/ses-2/report Labels are saved in /var/lib/condor/execute/dir_3556103/ds/UM/sub-0026189/ses-2/label ------------------------------------------------------------------------