[1.13090399255263 -0.113176697222736 0.0239417411803228 5.17505881185774;0.103143577040498 0.990914944971181 0.225672537809472 -1.72328202072364;-0.0410149235839068 -0.161843862443548 1.1129701391643 40.8708389076472;0 0 0 1] [1.13090399255263 -0.113176697222736 0.0239417411803228 5.17505881185774;0.103143577040498 0.990914944971181 0.225672537809472 -1.72328202072364;-0.0410149235839068 -0.161843862443548 1.1129701391643 40.8708389076472;0 0 0 1] [1 2 3 3 4 4 4 5 5 5 5 6 6] [249.258658337583 379.179863397385 41.4120462926666 125.874964740345 110.268294781345 30.3797642159464 54.0146085359104 245.839936386064 453.232748430306 645.523075288469 175.786530871018 177.717595023196 43.6701080528493] [2358.29973282316;407.209640553888;259.475027437941;2210.79790476126;1517.50021370519;115.990057655152;418.874054261973;4739.06001472867;5144.10552398827;57809.0647566804;3740.51051730304;4388.376657208;286.790603108262] -5.5625319480896 [5.17505881185774 -1.72328202072364 40.8708389076472] [0.164250260024955 0.0208631339140209 -0.0955940881588333] [1.1363382690963 1.01026278844948 1.13514373649555] [-0.0148284497373056 0.00364301634598049 0.0400291736233179] [5.17505881185774 -1.72328202072364 40.8708389076472] [0.164250260024955 0.0208631339140209 -0.0955940881588333] [1.1363382690963 1.01026278844948 1.13514373649555] [-0.0148284497373056 0.00364301634598049 0.0400291736233179] /var/lib/condor/execute/dir_905704/ds/NYU_2/sub-0025094/ses-1 sub-0025094_ses-1_run-1_T1w /var/lib/condor/execute/dir_905704/ds/NYU_2/sub-0025094/ses-1/sub-0025094_ses-1_run-1_T1w.nii /var/lib/condor/execute/dir_905704/ds/NYU_2/sub-0025094/ses-1/sub-0025094_ses-1_run-1_T1w.nii /var/lib/condor/execute/dir_905704/ds/NYU_2/sub-0025094/ses-1/mri/msub-0025094_ses-1_run-1_T1w.nii /var/lib/condor/execute/dir_905704/ds/NYU_2/sub-0025094/ses-1/mri/p0sub-0025094_ses-1_run-1_T1w.nii ..s/NYU_2/sub-0025094/ses-1/sub-0025094_ses-1_run-1_T1w /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/tpm/TPM.nii [1 1 2 3 4 2] mni [0 0.001 0.5 0.05 0.2] 0.0001 0.5 0.5 0.001 60 3 0 1 0 1.4 2 0.5 0 -Inf 0.5 0.5 0.5 2 0.5 0 1 optimal [1 0.3] ../derivatives/CAT12.8.1_2040 0 1 human 1070 1 1.5 12 Template_T1 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/brainmask.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii 0.5 22 1 2 0 1 5 0 0.7 0.1 BCGWHw 2 1 1 1 0 2 10 1 1 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii 0 gm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii 1 gm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii 1 gm wm [false] /var/lib/condor/execute/dir_905704/ds/code/Tian_Subcortex_S2_7T.nii 1 gm wm csf [false] Desikan /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot 0 1 Destrieux /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot 0 1 HCP /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot 0 0 Schaefer2018_100P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot 1 0 Schaefer2018_200P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot 0 0 Schaefer2018_400P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot 1 0 Schaefer2018_600P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot 1 0 0 1 3 5 7 9 11 13 13 15 17 19 21 23 25 27 0 0 0 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii 0.5 [1 0.3] 0 pbt2x /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_5_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_6_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii 0 1 1639 184 5.05977429591894 60 0.0795900076627731 0.0974380820989609 [1.33000183105469 1 1] [1 1 1] 1.12084861758235 NaN [10.6884994506836 29.4909992218018 214.238998413086 378.246002197266] [0.0282580628991127 0.0779677778482437 0.566401243209839 1] T1 [7.01322851091127 50.3258830929371 51.6620732846679 34.5939636961921] [0.0190806295722723 0.136919751763344 0.140555083751678 0.0941185131669044] 130.151336669922 0.344091773033142 0.442315638065338 0.143982276320457 0.516319036483765 [2.66000366210938 2 2] 2.24169723516471 3.15467166900635 NaN [8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641] [8.624 8.624 8.624 8.624] 0.5 2.92195653915405 2.39796543121338 1.74037456512451 10.2857142857143 2.26494357397973 4 1.59180021286011 1.94876170158386 2.80631568725176 2.32894195283655 voxel dimensions RMS error of voxel size normalized gradient slope of the white matter boundary brain next to the image boundary mean within the tissue classes standard deviation within the tissue classes contrast between tissue classes contrast between tissue classes noise to contrast ratio inhomogeneity to contrast ratio average Euler number (characteristic) average area of topological defects average number of defects RMSE of the expected boundary intensity Ym of the IS, OS, and CS RMSE of the expected boundary position Ypp of the IS, OS, and CS Percentual area of self-intersections of the IS and OS. total intracranial volume (GM+WM+VT) relative tissue volume (CSF,GM,WM) relative WMH volume total surface area 1639 LINUX 7771 9.3 12.8.1 2040 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m cat12 20231031-031706 1639 1639 184 5.05977429591894 60 0.0795900076627731 0.0974380820989609 184 5.05977429591894 [197.316180392157 647.768121568627 503.711749019608 0 0] 1.21874509803922 0.00090357997204496 1810.91296097751 1348.79605098039 [0.146290597639825 0.480256537745486 0.373452864614689 0 0] [2.52423997309183 0.70371001760463] [2.55544185638428 0.833606716506535 1] [1.80666347186005 0.292959289505449 0.282305964893631;2.54896990729973 0.205531448212418 0.404852704731786;3.27152335070279 0.296586717380197 0.312841330374583] [0.766412662373486 0.241842402029308 0.627909082676809;4.20445571655947 0.282256189184088 0.372090917323191] 1.062210242243 [0.5 6.47515333594623 4.55698391908565 0.5 0.5] 1.0903579972045 8.5900812702182 5.33397561566328 [0 1 0 11156.864 0.469652292942379] [false] [0.00198993505910039 0.00162984128110111 0.107453517615795] [false] [775.459756862745 449.572745098039 361.173568627451 1041.19254901961 950.537019607843 8313.9793372549] [684.431921568627 422.726254901961 194.847364705882 754.931462745098 712.645831372549 8372.09772156863] [46.8157005310059 235.861694335938 379.789794921875] [-62.6450614929199 -62.6450576782227 -7.9146785736084 46.8157005310059 235.861694335938 379.789794921875 546.27685546875 1342.58190917969] [0 0.02 0.05 1 2 3 4 5] 16 1.5 3 0.5 [1 1 1 1 1] 0.015 [0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03] 15 0 2 1 Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0 [0.0238574966788292 0.0858123600482941 0.0950056239962578 0 0] [0.0872456282317614 0 0.0872456282317614 0;0.186365848829766 0.0122954504830497 0.198661299312816 2621.98022460938;0.186365848829766 0.0122954504830497 0.198661299312816 2621.98022460938] [0.0555434413254261 0.110111601650715 0.122475035488605] [0.0400216691195965 0.0513042621314526 0.0635300725698471] 0.122475035488605
0.0950056239962578
64 1.5 1.5 0.25 [1.66666666666667 1.5 1.33333333333333 1.16666666666667 1] 0.051 [0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501] 0.5 0 2 1 Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5 [0.0109016029164195 0.0413010455667973 0.0588723346590996 0.0679017007350922 0.0739819556474686 0.0837199985980988] [0.0873091767228655 0 0.0873091767228655 0;0.214518742368742 0.0181066620879121 0.232625404456654 9268.34765625;0.18931600417945 0.0198125026377739 0.209128506817223 14259.2958984375;0.167871299519045 0.0207241163407749 0.18859541585982 22346.234375;0.151352082026898 0.0229864939709138 0.174338575997812 40211.4921875;0.151352082026898 0.0229864939709138 0.174338575997812 40211.4921875] [0.0125670395791531 0.0468586832284927 0.070514053106308 0.0989650413393974 0.124300189316273 0.132131725549698] [0.00369564653374255 0.0146569134667516 0.0315258577466011 0.0537779852747917 0.0732668042182922 0.0793195739388466] 0.132131725549698
0.0837199985980988
------------------------------------------------------------------------ CAT12.8.1 r2040: 1/1: ./sub-0025094/ses-1/sub-0025094_ses-1_run-1_T1w.n ------------------------------------------------------------------------ SANLM denoising (medium): 42s Internal resampling (1.33x1.00x1.00mm > 1.00x1.00x1.00mm): 1s APP: Rough bias correction: Initialize 6s Estimate background 6s Initial correction 5s Refine background 3s Final correction 4s Final scaling 4s 33s Correct center-of-mass 3s Affine registration 8s SPM preprocessing 1 (estimate 1 - TPM registration): 66s SPM preprocessing 1 (estimate 2): 67s SPM preprocessing 2 (write): Write Segmentation 15s Update Segmentation 17s Update Skull-Stripping 37s Update probability maps 8s 77s Global intensity correction: 15s SANLM denoising after intensity normalization (medium): 22s Fast Optimized Shooting registration 29s Local adaptive segmentation (LASstr=0.50): Prepare maps 3s Prepare partitions 2s Prepare segments (LASmod = 1.12) 12s Estimate local tissue thresholds (WM) 16s Estimate local tissue thresholds (GM) 22s Intensity transformation 0s SANLM denoising after LAS (medium) 36s 93s ROI segmentation (partitioning): Atlas -> subject space 6s Major structures 3s Ventricle detection 10s Blood vessel detection 7s WMH detection (WMHCstr=0.50 > WMHCstr'=0.04) 21s Manual stroke lesion detection 0s Closing of deep structures 1s Side alignment 3s Final corrections 4s 55s Blood vessel correction (BVCstr=0.50): 1s Amap using initial SPM12 segmentations (MRF filter strength 0.06): 27s AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.67 0.08,0.98 0.05] Final cleanup (gcutstr=0.25): Level 1 cleanup (ROI estimation) 3s Level 1 cleanup (brain masking) 2s Level 2 cleanup (CSF correction) 1s Level 3 cleanup (CSF/WM PVE) 2s 9s Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50): Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii" 1 | 2.50 | 0.0873 0.0000 0.0873 | 32.0000 2 | 2.50 | 0.0823 0.0017 0.0840 | 29.4886 3 | 2.50 | 0.0807 0.0027 0.0834 | 26.9772 4 | 2.50 | 0.0800 0.0031 0.0831 | 24.6107 5 | 2.50 | 0.0795 0.0033 0.0828 | 22.6548 6 | 2.50 | 0.0790 0.0034 0.0824 | 20.6989 7 | 2.50 | 0.0786 0.0035 0.0821 | 18.9688 8 | 2.50 | 0.0781 0.0036 0.0818 | 17.4455 9 | 2.50 | 0.0777 0.0037 0.0814 | 15.9223 10 | 2.50 | 0.0772 0.0038 0.0810 | 14.6627 11 | 2.50 | 0.0768 0.0039 0.0807 | 13.4764 12 | 2.50 | 0.0763 0.0040 0.0803 | 12.3015 13 | 2.50 | 0.0758 0.0041 0.0799 | 11.3776 14 | 2.50 | 0.0754 0.0041 0.0795 | 10.4537 15 | 2.25 | 0.0751 0.0043 0.0794 | 9.5920 16 | 2.25 | 0.0715 0.0060 0.0775 | 8.8725 29 | 2.00 | 0.0726 0.0027 0.0753 | 3.3283 30 | 2.00 | 0.0655 0.0055 0.0710 | 3.1221 31 | 2.00 | 0.0631 0.0066 0.0697 | 2.9160 43 | 1.75 | 0.0618 0.0039 0.0657 | 1.5785 44 | 1.75 | 0.0574 0.0061 0.0635 | 1.5194 45 | 1.75 | 0.0560 0.0069 0.0629 | 1.4626 57 | 1.50 | 0.0544 0.0051 0.0595 | 1.0900 58 | 1.50 | 0.0514 0.0070 0.0585 | 1.0730 59 | 1.50 | 0.0505 0.0077 0.0581 | 1.0579 Shooting registration with 2.50:-0.25:1.50 mm takes: 142s Prepare output 9s 151s Jacobian determinant (RMS): 0.013 0.047 0.071 0.099 0.124 | 0.132132 Template Matching: 0.087 0.215 0.189 0.168 0.151 | 0.151352 Write result maps: 49s Surface and thickness estimation: lh: Thickness estimation (0.50 mm ): WM distance: 23s CSF distance: 12s PBT2x thickness: 36s 77s Create initial surface 73s Topology correction: 81s Surface refinement: 68s Reduction of surface collisions with optimization: 58s Spherical mapping with areal smoothing 67s Spherical registration 249s rh: Thickness estimation (0.50 mm ): WM distance: 24s CSF distance: 12s PBT2x thickness: 35s 77s Create initial surface 70s Topology correction: 80s Surface refinement: 66s Reduction of surface collisions with optimization: 57s Spherical mapping with areal smoothing 67s Spherical registration 258s Final surface processing results: Average thickness (FS): 2.5242 0.7037 mm Surface intensity / position RMSE: 0.0796 / 0.0974 Euler number / defect number / defect size: 184.0 / 60.0 / 5.06% Display thickness: /var/lib/condor/execute/dir_905704/ds/NYU_2/sub-0025094/ses-1/surf/lh.thickness.sub-0025094_ses-1_run-1_T1w Display thickness: /var/lib/condor/execute/dir_905704/ds/NYU_2/sub-0025094/ses-1/surf/rh.thickness.sub-0025094_ses-1_run-1_T1w Show surfaces in orthview: /var/lib/condor/execute/dir_905704/ds/NYU_2/sub-0025094/ses-1/sub-0025094_ses-1_run-1_T1w.nii Surface ROI estimation: 8s Surface and thickness estimation takes: 1429s ROI estimation in native space: ROI estimation of 'cobra' atlas 7s ROI estimation of 'neuromorphometrics' atlas 24s ROI estimation of 'lpba40' atlas 7s ROI estimation of 'hammers' atlas 17s ROI estimation of 'thalamus' atlas 1s ROI estimation of 'ibsr' atlas 6s ROI estimation of 'aal3' atlas 10s ROI estimation of 'mori' atlas 15s ROI estimation of 'anatomy3' atlas 21s ROI estimation of 'julichbrain' atlas 30s ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 11s ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 20s ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 45s ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 69s ROI estimation of 'Tian_Subcortex_S2_7T' atlas 6s Write results 7s 289s Quality check: 9s Print 'Graphics' figure to: /var/lib/condor/execute/dir_905704/ds/NYU_2/sub-0025094/ses-1/report/catreport_sub-0025094_ses-1_run-1_T1w.pdf ------------------------------------------------------------------------ CAT preprocessing takes 42 minute(s) and 20 second(s). Image Quality Rating (IQR): 81.71% (B-) GM volume (GMV): 48.03% (647.77 / 1348.80 ml) GM thickness (GMT): 2.52 0.70 mm Segmentations are saved in /var/lib/condor/execute/dir_905704/ds/NYU_2/sub-0025094/ses-1/mri Reports are saved in /var/lib/condor/execute/dir_905704/ds/NYU_2/sub-0025094/ses-1/report Labels are saved in /var/lib/condor/execute/dir_905704/ds/NYU_2/sub-0025094/ses-1/label ------------------------------------------------------------------------