[1.09980624048095 -0.0296449711125734 0.00341643547913511 -5.81315431126504;0.0400103101218606 1.04292455400254 0.101027730400018 -60.4147164030395;-0.00587697985105834 -0.0810439653968945 1.18155152438246 -17.7046520831616;0 0 0 1] [1.09980624048095 -0.0296449711125734 0.00341643547913511 -5.81315431126504;0.0400103101218606 1.04292455400254 0.101027730400018 -60.4147164030395;-0.00587697985105834 -0.0810439653968945 1.18155152438246 -17.7046520831616;0 0 0 1] [1 2 3 3 4 4 4 5 5 5 5 6 6] [33.2880096444253 64.8870912269533 89.8392716012077 247.093688277215 -1.32075929983747 13.4304296693525 17.1045709739899 32.4786059622995 88.2442026051621 53.2017424720393 21.5660885392761 13.2747544864341 9.7594720992796] [148.528150288484;50.904846073824;1113.99071830769;12106.0389532285;1.3711098405934;6.16549718817531;11.3908269413885;67.0176136808907;1469.44519374481;329.739259141555;21.0727140783474;7.27402374360115;2.98398351001657] -4.16239976882935 [-5.81315431126504 -60.4147164030395 -17.7046520831616] [0.0776235488835981 0.00250648972309926 -0.0366676908428067] [1.10054946749752 1.04645233044866 1.1858327383258] [0.00792621531783201 0.000706412593086908 0.00867404196562084] [-5.81315431126504 -60.4147164030395 -17.7046520831616] [0.0776235488835981 0.00250648972309926 -0.0366676908428067] [1.10054946749752 1.04645233044866 1.1858327383258] [0.00792621531783201 0.000706412593086908 0.00867404196562084] /var/lib/condor/execute/dir_61675/ds/MPG_1/sub-0027449/ses-1 sub-0027449_ses-1_acq-inv1_run-1_T1w /var/lib/condor/execute/dir_61675/ds/MPG_1/sub-0027449/ses-1/sub-0027449_ses-1_acq-inv1_run-1_T1w.nii /var/lib/condor/execute/dir_61675/ds/MPG_1/sub-0027449/ses-1/sub-0027449_ses-1_acq-inv1_run-1_T1w.nii /var/lib/condor/execute/dir_61675/ds/MPG_1/sub-0027449/ses-1/mri/msub-0027449_ses-1_acq-inv1_run-1_T1w.nii /var/lib/condor/execute/dir_61675/ds/MPG_1/sub-0027449/ses-1/mri/p0sub-0027449_ses-1_acq-inv1_run-1_T1w.nii ..s/MPG_1/sub-0027449/ses-1/sub-0027449_ses-1_acq-inv1_run-1_T1w /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/tpm/TPM.nii [1 1 2 3 4 2] mni [0 0.001 0.5 0.05 0.2] 0.0001 0.5 0.5 0.001 60 3 0 1 0 1.4 2 0.5 0 -Inf 0.5 0.5 0.5 2 0.5 0 1 optimal [1 0.3] ../derivatives/CAT12.8.1_2040 0 1 human 1070 1 1.5 12 Template_T1 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/brainmask.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii 0.5 22 1 2 0 1 5 0 0.7 0.1 BCGWHw 2 1 1 1 0 2 10 1 1 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii 0 gm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii 1 gm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii 1 gm wm [false] /var/lib/condor/execute/dir_61675/ds/code/Tian_Subcortex_S2_7T.nii 1 gm wm csf [false] Desikan /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot 0 1 Destrieux /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot 0 1 HCP /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot 0 0 Schaefer2018_100P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot 1 0 Schaefer2018_200P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot 0 0 Schaefer2018_400P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot 1 0 Schaefer2018_600P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot 1 0 0 1 3 5 7 9 11 13 13 15 17 19 21 23 25 27 0 0 0 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii 0.5 [1 0.3] 0 pbt2x /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_5_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_6_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii [true] [0.96 0.9999] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii 1 46 1.37850326775757 32 0.132917314767838 0.133093565702438 [0.699999988079071 0.699999988079071 0.699999988079071] [0.700000047683716 0.699999988079071 0.699999988079071] 0.699999988079071 0 [4.87400007247925 38.8730010986328 39.2060012817383 75.6110000610352] [0.0644615218043327 0.514118313789368 0.518522441387177 1] T1 [10.1279869033553 48.738776943118 19.1648608835665 9.49561670997883] [0.143178060650826 0.68901389837265 0.270931214094162 0.134238332509995] 24.9820823669434 0.330402761697769 1 0.529893577098846 0.915956139564514 [1.39999997615814 1.39999997615814 1.39999997615814] 1.39999997615814 6 1 [8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641] [8.624 8.624 8.624 8.624] 0.5 3.1272919178009 7.93789196014404 2.73153805732727 3.24489795918367 1.34462581693939 2.6 2.65834641456604 2.66187143325806 7.00747624989803 7.27907987383551 voxel dimensions RMS error of voxel size normalized gradient slope of the white matter boundary brain next to the image boundary mean within the tissue classes standard deviation within the tissue classes contrast between tissue classes contrast between tissue classes noise to contrast ratio inhomogeneity to contrast ratio average Euler number (characteristic) average area of topological defects average number of defects RMSE of the expected boundary intensity Ym of the IS, OS, and CS RMSE of the expected boundary position Ypp of the IS, OS, and CS Percentual area of self-intersections of the IS and OS. total intracranial volume (GM+WM+VT) relative tissue volume (CSF,GM,WM) relative WMH volume total surface area LINUX 7771 9.3 12.8.1 2040 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m cat12 20231031-032159 cat_run_job1639:nonT1contrast A non-T1 contrast was detected and the NEW EXPERIMENTAL </br>PIPELINE is used! If it is was a high-resolution T1 image, </br>the initial segmentation might have failed, probably due </br>to alignment problems (please check the image orientation). 1 [94.74383 33.28801 64.88709 14.9017 39.8669 11.65636] cat_main:skipLAS Skip LAS due to image contrast. Use global normalization. 0 46 1.37850326775757 32 0.132917314767838 0.133093565702438 46 1.37850326775757 [180.256899712062 752.493786378803 278.739952176178 0 0] 0 0 1206.93676390916 1211.49063826704 [0.148789345966311 0.621130500401716 0.230080153631973 0 0] [3.18507791575397 1.02500556511015] [3.24338006973267 1.68748467533885 1] [1.30101040711338 0.629707041336518 0.148440235423579;2.97471644562144 0.3893271915438 0.498907914700635;4.23052372846984 0.45838411954175 0.352651849875786] [NaN NaN NaN;NaN NaN NaN] 1.80132341820635 [0.522078770946676 9.00521732043312 1.98204298907997 0.5 0.5] 1 4.12007171981312 7.36416051992067 [0 1 0 8429.56756933594 0.657423735570972] [false] [0.0621318072080612 0.0599515065550804 0.0941659584641457] [false] [878.352592512587 301.898270513965 229.182012468637 723.214055785463 2096.41611444664 4196.04485712427] 16 1.5 3 0.5 [1 1 1 1 1] 0.015 [0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03] 15 0 2 1 Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0 [0.0180902499705553 0.0676496848464012 0.075947031378746 0 0] [0.0911938322692358 0 0.0911938322692358 0;0.221442507667129 0.0115109543267991 0.232953461993928 2454.68798828125;0.221442507667129 0.0115109543267991 0.232953461993928 2454.68798828125] [0.0497575923800468 0.101227417588234 0.118432931602001] [0.0369273796677589 0.0624098032712936 0.0798940062522888] 0.118432931602001

0.075947031378746

[830.600994439118 323.781255624001 167.217344013035 809.985947207562 2115.99056420746 4181.92374302762] [94.74383 33.28801 64.88709] [-0.127660170197487 4.91036224365234 34.6372947692871 65.2189483642578 78.9006576538086 523.622619628906] [0 0.1 1 2 3 4] [0.31894044897248 0.671240948527448 1.02768523254572] [0 0.333333333333333 0.666666666666667 1 1.33333333333333 1.66666666666667 2] [0 0.956821346917441 2.01372284558234 3.08305569763715 4 5 6] [0.319234971989729 0.670231880116328 1.02735403487076] [0 0.333333333333333 0.666666666666667 1 1.33333333333333 1.66666666666667 2] [0 0.957704915969188 2.01069564034898 3.08206210461228 4 5 6] [0.32916268959301 0.666295964152386 0.999953720789361] [0 0.333333333333333 0.666666666666667 1 1.33333333333333 1.66666666666667 2] [0 0.98748806877903 1.99888789245716 2.99986116236808 4 5 6] [0.329325781602537 0.666185632007913 0.999957178218079] [0 0.333333333333333 0.666666666666667 1 1.33333333333333 1.66666666666667 2] [0 0.987977344807611 1.99855689602374 2.99987153465424 4 5 6] 64 1.5 1.5 0.25 [1.66666666666667 1.5 1.33333333333333 1.16666666666667 1] 0.051 [0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501] 0.5 0 2 1 Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5 [0.0140672195702791 0.0615053661167622 0.0878453403711319 0.100819818675518 0.109916098415852 0.134528338909149] [0.0897145172617075 0 0.0897145172617075 0;0.208448244810745 0.0273504502442002 0.235798695054945 14000.01171875;0.178515590263883 0.0263978366954421 0.204913426959325 18998.83984375;0.158248234791407 0.0248100882128999 0.183058323004307 26752.0234375;0.14482067620143 0.0269393482547548 0.171760024456185 47126.4296875;0.14482067620143 0.0269393482547548 0.171760024456185 47126.4296875] [0.0165568273514509 0.0668538138270378 0.110047586262226 0.159203201532364 0.204876691102982 0.215512335300446] [0.00475508067756891 0.0210950989276171 0.0480326190590858 0.0840151906013489 0.120366543531418 0.128809154033661] 0.215512335300446

0.134528338909149

------------------------------------------------------------------------ CAT12.8.1 r2040: 1/1: ./ses-1/sub-0027449_ses-1_acq-inv1_run-1_T1w.n ------------------------------------------------------------------------ SANLM denoising (medium): 242s APP: Rough bias correction: Initialize 9s Estimate background 9s Initial correction 8s Refine background 5s Final correction 6s Final scaling 11s 57s Correct center-of-mass 2s Affine registration 26s SPM preprocessing 1 (estimate 1 - TPM registration): 30s SPM preprocessing 1 (estimate 2): 47s ---------------------------------------------------------------------------- WARNING 01: cat_run_job1639:nonT1contrast A non-T1 contrast was detected and the NEW EXPERIMENTAL PIPELINE is used! If it is was a high-resolution T1 image, the initial segmentation might have failed, probably due to alignment problems (please check the image orientation). ---------------------------------------------------------------------------- SPM preprocessing 2 (write): Write Segmentation 26s Update segmentation 44s Update skull-stripping 21s Update probability maps 2s Update registration 32s 125s Global intensity correction: SANLM denoising after intensity normalization (medium): 61s ------------------------------------------------------------------------ NOTE 01: cat_main:skipLAS Skip LAS due to image contrast. Use global normalization. ------------------------------------------------------------------------ 134s SANLM denoising after LAS (medium) 107s 168s --- Update Ym and Ymi --- ROI segmentation (partitioning): Atlas -> subject space 7s Major structures 1s Ventricle detection 2s Blood vessel detection 1s Manual stroke lesion detection 0s Closing of deep structures 0s Side alignment 1s Final corrections 7s 18s Amap using initial SPM12 segmentations (MRF filter strength 0.07): 66s AMAP peaks: [0.94 0.05,0.35 0.09,0.64 0.05] --- Update Ym and Ymi --- Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50): Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii" 1 | 2.50 | 0.0897 0.0000 0.0897 | 32.0000 2 | 2.50 | 0.0842 0.0020 0.0862 | 29.4886 3 | 2.50 | 0.0825 0.0031 0.0856 | 26.9772 4 | 2.50 | 0.0816 0.0036 0.0852 | 24.6107 5 | 2.50 | 0.0809 0.0040 0.0849 | 22.6548 6 | 2.50 | 0.0803 0.0042 0.0845 | 20.6989 7 | 2.50 | 0.0796 0.0044 0.0840 | 18.9688 8 | 2.50 | 0.0790 0.0046 0.0836 | 17.4455 9 | 2.50 | 0.0783 0.0048 0.0831 | 15.9223 10 | 2.50 | 0.0776 0.0050 0.0826 | 14.6627 11 | 2.50 | 0.0769 0.0052 0.0822 | 13.4764 12 | 2.50 | 0.0762 0.0054 0.0816 | 12.3015 13 | 2.50 | 0.0755 0.0056 0.0811 | 11.3776 14 | 2.50 | 0.0748 0.0058 0.0806 | 10.4537 15 | 2.25 | 0.0756 0.0061 0.0817 | 9.5920 16 | 2.25 | 0.0714 0.0083 0.0797 | 8.8725 17 | 2.25 | 0.0695 0.0091 0.0786 | 8.1530 29 | 2.00 | 0.0696 0.0042 0.0738 | 3.3283 30 | 2.00 | 0.0620 0.0077 0.0697 | 3.1221 31 | 2.00 | 0.0595 0.0088 0.0683 | 2.9160 43 | 1.75 | 0.0582 0.0052 0.0634 | 1.5785 44 | 1.75 | 0.0541 0.0076 0.0616 | 1.5194 45 | 1.75 | 0.0527 0.0083 0.0610 | 1.4626 57 | 1.50 | 0.0521 0.0063 0.0584 | 1.0900 58 | 1.50 | 0.0492 0.0084 0.0575 | 1.0730 59 | 1.50 | 0.0483 0.0090 0.0573 | 1.0579 Shooting registration with 2.50:-0.25:1.50 mm takes: 110s Prepare output 12s 122s Jacobian determinant (RMS): 0.017 0.067 0.110 0.159 0.205 | 0.215512 Template Matching: 0.090 0.208 0.179 0.158 0.145 | 0.144821 Write result maps: 45s Surface and thickness estimation: lh: Thickness estimation (0.50 mm ): WM distance: 15s CSF distance: 9s PBT2x thickness: 27s 55s Create initial surface 43s Topology correction: 36s Surface refinement: 41s Reduction of surface collisions with optimization: 35s Spherical mapping with areal smoothing 33s Spherical registration 194s rh: Thickness estimation (0.50 mm ): WM distance: 15s CSF distance: 10s PBT2x thickness: 27s 56s Create initial surface 41s Topology correction: 36s Surface refinement: 32s Reduction of surface collisions with optimization: 57s Spherical mapping with areal smoothing 33s Spherical registration 187s Final surface processing results: Average thickness (FS): 3.1854 1.0247 mm Surface intensity / position RMSE: 0.1329 / 0.1331 Euler number / defect number / defect size: 46.0 / 32.0 / 1.38% Display thickness: /var/lib/condor/execute/dir_61675/ds/MPG_1/sub-0027449/ses-1/surf/lh.thickness.sub-0027449_ses-1_acq-inv1_run-1_T1w Display thickness: /var/lib/condor/execute/dir_61675/ds/MPG_1/sub-0027449/ses-1/surf/rh.thickness.sub-0027449_ses-1_acq-inv1_run-1_T1w Show surfaces in orthview: /var/lib/condor/execute/dir_61675/ds/MPG_1/sub-0027449/ses-1/sub-0027449_ses-1_acq-inv1_run-1_T1w.nii Surface ROI estimation: 1585s Surface and thickness estimation takes: 1310s ROI estimation in native space: ROI estimation of 'cobra' atlas 13s ROI estimation of 'neuromorphometrics' atlas 46s ROI estimation of 'lpba40' atlas 13s ROI estimation of 'hammers' atlas 32s ROI estimation of 'thalamus' atlas 2s ROI estimation of 'ibsr' atlas 11s ROI estimation of 'aal3' atlas 18s ROI estimation of 'mori' atlas 28s ROI estimation of 'anatomy3' atlas 40s ROI estimation of 'julichbrain' atlas 53s ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 21s ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 39s ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 85s ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 128s ROI estimation of 'Tian_Subcortex_S2_7T' atlas 11s Write results 12s 543s Quality check: 15s Print 'Graphics' figure to: /var/lib/condor/execute/dir_61675/ds/MPG_1/sub-0027449/ses-1/report/catreport_sub-0027449_ses-1_acq-inv1_run-1_T1w.pdf ------------------------------------------------------------------------ CAT preprocessing takes 46 minute(s) and 22 second(s). Image Quality Rating (IQR): 32.21% (F) GM volume (GMV): 62.11% (752.49 / 1211.49 ml) GM thickness (GMT): 3.19 1.03 mm Segmentations are saved in /var/lib/condor/execute/dir_61675/ds/MPG_1/sub-0027449/ses-1/mri Reports are saved in /var/lib/condor/execute/dir_61675/ds/MPG_1/sub-0027449/ses-1/report Labels are saved in /var/lib/condor/execute/dir_61675/ds/MPG_1/sub-0027449/ses-1/label ------------------------------------------------------------------------