Progress Report / Log

Started at Thu 19 Mar 2020 10:39:02 AM CET

Feat main script


/bin/cp /data/project/studyforrest_ppa/sub-01/2nd-lvl_audio-ppa-ind.fsf design.fsf

/usr/share/fsl/5.0/bin/feat_model design

mkdir .files;cp /usr/share/fsl/5.0/doc/fsl.css .files;cp -r /usr/share/fsl/5.0/doc/images .files/images

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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 24543  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_audio-ppa-ind.gfeat/cope13.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_audio-ppa-ind.gfeat/cope13.feat -stop
27502

/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 6455,23142,6757,22385,5132,20459,3348,18893,2316,17465,32568,15488,27502  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_audio-ppa-ind.gfeat/cope13.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_audio-ppa-ind.gfeat -stop

Higher-level input files preparation

/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_9eWfpp -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_IXpDON -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_FwwER6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_SegY8g -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_Ue12Ss -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_BhLNEB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_IpCvQO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_rHGcf1 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_fhd8yd -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_nbn5ri -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_ewAbut -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_kr0ktG -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_VoY0wS -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_pqj7y6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_118WGj -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_12RmDn -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_4Faj8B -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_dxuTYP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_HsixM0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_ap1QKd -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_a6uZWi -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_D2Mkkr -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_gUHt8D -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_hfw5bT -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_jtjsY1 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_LJ0j6d -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_wZUrnr -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_xHATQu -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_OrpEtH -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_0UZwRY -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_gxrF9p -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_LHykmJ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_vm62oS -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_dTf4v4 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_s3d6Gi -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_RnjuKw -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_puPSlx -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_YISgLJ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_6HiQGX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_le5ju8 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_oLiyBk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_s267xy -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_xgwidC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_y4gTeP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_8BjvWZ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_MwWuzg -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_SxhZer -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_DJlY2E -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_4HggIF -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_Dn2F3U -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_8OOXC7 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_jKPvtj -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_tQi1mw -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_HiCHSI -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_E6bFyK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_C3O32W -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_yCnJI8 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_UEeGol -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_BGnlXC -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_4uNibU -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_KTERVl -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_PN1LZA -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_W9A5kK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_WTM0AN -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_ycdYH3 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_X8VkRf -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_ujUNRr -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_eFxl1D -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_wEFohS -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_7vQYvX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_aom6sa -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_cbyFLm -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_E1nSMx -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_z3J4tL -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_VKIEZX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_3LnWlY -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_CM9jVa -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_eWGNcn -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_LqplHC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_Ds9ANO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_1RHj0X -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_CY0GP1 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_aOtz9d -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_IU50Pt -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_DelD5C -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_tP0EGP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_G0DLA5 -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_54Bjua -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_Tmp6SB -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_023742 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_5iBU84 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_ly9tsk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_Yizutv -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_rw0vjI -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_WVyZXX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_NKvGX6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_si2q8d -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_Z8xO7s -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_cXKJOF -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_yzGZgQ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_dSLGG3 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_GsNdUe -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_Lfrk6k -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_vRVtGw -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_JBZmCJ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_X4MGQV -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_M85CP6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_rZFxRi -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_rJjGUn -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_t8Rqkx -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_6gEPZJ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_kWuzmV -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_Zj1KF8 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_6dbyXk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_5iyTlq -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_px0paB -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_D8tGdS -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_mklSTi -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_M0yVMC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_K4sbzO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_XjjZZ1 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_0pdK9a -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_cdAQzq -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_VJAU2q -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_LfwvQD -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_OzJ57S -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_XsZgS5 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_Ft5lOg -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_RS2vFu -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_1VwAaz -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_gpmCeL -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_h4FyOV -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_M74G27 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_Wrzgcl -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_1iimFx -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_q8hqiC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_KZSUkO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_zdnGI0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_xxypUb -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_Q7YE7n -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_8yHNkC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_vApkmC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_2eptrP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_Jddy00 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_UyEj0g -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_QIDJWy -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_GVNIPP -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_14NkCh -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_uCMZyt -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_HcfbNG -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_CxiDsT -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_umTErV -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_QUrTs7 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_apjdAg -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_IvLlQs -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_pFza8E -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_BxASMQ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_GbiO7U -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_r3Oyj7 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_vnNNHj -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_wOMqBx -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_CthBtI -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_WD2KDY -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_gIemTZ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_mMSh0c -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_aJp3Ao -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_7ldoSB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_6U6f7M -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_MTPqqZ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_8a9u40 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_z5s53c -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_2lL2Ip -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_TB49AB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_mFEnyR -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_Ntlt2Z -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_jFeaAr -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_Pw7ipR -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_sMOg93 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_tQiI44 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_dkY1rh -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_dnm9Gv -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_cNXl6H -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_H5jMDT -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_7v3gY2 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_RQJvJ6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_bOs3yj -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_CZGqgv -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_Pcw3qI -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_OUaNST -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_bHuGb7 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_2INQ8a -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_eH3bRm -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_FYdvMC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_lsQLtP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_MAOYi0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_1wV41d -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_A7Cs0e -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_hJjQXq -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_f0TzhD -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_OlCGUS -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_cVuXT1 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_S2ZjId -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_YS53wi -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_OTgkVz -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_rTaYH4 -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_1kJbtn -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_kbYGFz -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_JJYkHK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_fM8r2W -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_UD1JL9 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_O1m3Zl -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_mOCwLp -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_BAb9AD -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_VhmPxP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_XjmRR1 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_QbL8Se -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_ymVTvq -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_IcIkNz -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_sKba2E -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_azXhpQ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_xoToF1 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_3S9gdg -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_KoqClq -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_NJwZJC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_1awP6G -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_B3kreT -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_2kneg6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_H1u1ti -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_KNdz5u -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_jY1CgH -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_ekJ8VK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_uw6xsX -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg/standard bg_image

/usr/share/fsl/5.0/bin/fslmerge -t mask  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/mask

mkdir -p inputreg

/usr/share/fsl/5.0/bin/fslmaths ../mask -mul 8 -Tmean masksum -odt short

/usr/share/fsl/5.0/bin/fslmaths masksum -thr 8 -add masksum masksum

/usr/share/fsl/5.0/bin/overlay 0 0 -c ../bg_image -a masksum 0.9 16 masksum_overlay

/usr/share/fsl/5.0/bin/slicer masksum_overlay -S 2 750 masksum_overlay.png

/usr/share/fsl/5.0/bin/fslmaths masksum -mul 0 maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 1 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 2 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 3 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 4 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 5 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 6 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 7 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 8 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths masksum -thr 7 -uthr 7 -bin -mul maskunique maskunique

/usr/share/fsl/5.0/bin/overlay 0 0 ../bg_image -a maskunique 0.9 8 maskunique_overlay

/usr/share/fsl/5.0/bin/slicer maskunique_overlay -S 2 750 maskunique_overlay.png

/bin/cp /usr/share/fsl/5.0/etc/luts/ramp.gif .ramp.gif

/usr/share/fsl/5.0/bin/fslmaths mask -Tmin mask

/usr/share/fsl/5.0/bin/fslmerge -t mean_func  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/mean_func

/usr/share/fsl/5.0/bin/fslmaths mean_func -Tmean mean_func

/usr/share/fsl/5.0/bin/fslmerge -t cope1  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/cope1

/usr/share/fsl/5.0/bin/fslmaths cope1 -mas mask cope1

printf '0.03659306625 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope1  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope1

/usr/share/fsl/5.0/bin/fslmaths varcope1 -mas mask varcope1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t1  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths tdof_t1 -mas mask tdof_t1

/usr/share/fsl/5.0/bin/fslmerge -t cope2  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/cope2

/usr/share/fsl/5.0/bin/fslmaths cope2 -mas mask cope2

printf '0.03824006125 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope2  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope2

/usr/share/fsl/5.0/bin/fslmaths varcope2 -mas mask varcope2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t2  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths tdof_t2 -mas mask tdof_t2

/usr/share/fsl/5.0/bin/fslmerge -t cope3  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/cope3

/usr/share/fsl/5.0/bin/fslmaths cope3 -mas mask cope3

printf '0.017259721250000002 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope3  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope3

/usr/share/fsl/5.0/bin/fslmaths varcope3 -mas mask varcope3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t3  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths tdof_t3 -mas mask tdof_t3

/usr/share/fsl/5.0/bin/fslmerge -t cope4  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/cope4

/usr/share/fsl/5.0/bin/fslmaths cope4 -mas mask cope4

printf '0.035436135 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope4  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope4

/usr/share/fsl/5.0/bin/fslmaths varcope4 -mas mask varcope4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t4  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths tdof_t4 -mas mask tdof_t4

/usr/share/fsl/5.0/bin/fslmerge -t cope5  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/cope5

/usr/share/fsl/5.0/bin/fslmaths cope5 -mas mask cope5

printf '0.029663538750000003 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope5  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope5

/usr/share/fsl/5.0/bin/fslmaths varcope5 -mas mask varcope5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t5  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths tdof_t5 -mas mask tdof_t5

/usr/share/fsl/5.0/bin/fslmerge -t cope6  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/cope6

/usr/share/fsl/5.0/bin/fslmaths cope6 -mas mask cope6

printf '0.029099645000000004 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope6  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope6

/usr/share/fsl/5.0/bin/fslmaths varcope6 -mas mask varcope6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t6  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths tdof_t6 -mas mask tdof_t6

/usr/share/fsl/5.0/bin/fslmerge -t cope7  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/cope7

/usr/share/fsl/5.0/bin/fslmaths cope7 -mas mask cope7

printf '0.024457831250000003 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope7  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope7

/usr/share/fsl/5.0/bin/fslmaths varcope7 -mas mask varcope7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t7  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths tdof_t7 -mas mask tdof_t7

/usr/share/fsl/5.0/bin/fslmerge -t cope8  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/cope8

/usr/share/fsl/5.0/bin/fslmaths cope8 -mas mask cope8

printf '0.0877385575 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope8  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope8

/usr/share/fsl/5.0/bin/fslmaths varcope8 -mas mask varcope8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t8  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths tdof_t8 -mas mask tdof_t8

/usr/share/fsl/5.0/bin/fslmerge -t cope9  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/cope9

/usr/share/fsl/5.0/bin/fslmaths cope9 -mas mask cope9

printf '0.06014276500000001 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope9  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope9

/usr/share/fsl/5.0/bin/fslmaths varcope9 -mas mask varcope9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t9  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths tdof_t9 -mas mask tdof_t9

/usr/share/fsl/5.0/bin/fslmerge -t cope10  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/cope10

/usr/share/fsl/5.0/bin/fslmaths cope10 -mas mask cope10

printf '0.038955162499999994 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope10  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope10

/usr/share/fsl/5.0/bin/fslmaths varcope10 -mas mask varcope10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t10  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths tdof_t10 -mas mask tdof_t10

/usr/share/fsl/5.0/bin/fslmerge -t cope11  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/cope11

/usr/share/fsl/5.0/bin/fslmaths cope11 -mas mask cope11

printf '0.0461818925 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope11  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope11

/usr/share/fsl/5.0/bin/fslmaths varcope11 -mas mask varcope11

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t11  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmaths tdof_t11 -mas mask tdof_t11

/usr/share/fsl/5.0/bin/fslmerge -t cope12  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/cope12

/usr/share/fsl/5.0/bin/fslmaths cope12 -mas mask cope12

printf '0.029504753749999998 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope12  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope12

/usr/share/fsl/5.0/bin/fslmaths varcope12 -mas mask varcope12

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t12  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmaths tdof_t12 -mas mask tdof_t12

/usr/share/fsl/5.0/bin/fslmerge -t cope13  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/cope13

/usr/share/fsl/5.0/bin/fslmaths cope13 -mas mask cope13

printf '0.0426235725 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope13  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope13

/usr/share/fsl/5.0/bin/fslmaths varcope13 -mas mask varcope13

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t13  /data/project/studyforrest_ppa/sub-01/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-01/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-01/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-01/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-01/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-01/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-01/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-01/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmaths tdof_t13 -mas mask tdof_t13