Browse Source

simplified adn completed environment yml

Paul Pfeiffer 3 years ago
parent
commit
3a049802f3
1 changed files with 9 additions and 234 deletions
  1. 9 234
      environment.yml

+ 9 - 234
environment.yml

@@ -1,243 +1,18 @@
 name: interneuron_polarity
 channels:
-  - https://repo.continuum.io/pkgs/free
   - defaults
   - conda-forge
   - ostrokach-forge
   - pkgw-forge
 dependencies:
-  - at-spi2-atk=2.26.2=h9b4a0fc_1
-  - at-spi2-core=2.28.0=h9b4a0fc_1
-  - atk=2.25.90=hf2eb9ee_1001
-  - atomicwrites=1.3.0=py37_1
-  - attrs=19.1.0=py37_1
-  - backcall=0.1.0=py37_0
-  - binutils_impl_linux-64=2.31.1=h6176602_1
-  - binutils_linux-64=2.31.1=h6176602_7
-  - blas=1.0=mkl
-  - bleach=3.1.0=py37_0
-  - boost=1.69.0=py37h8619c78_1001
-  - boost-cpp=1.69.0=h11c811c_1000
-  - brian2=2.2.2.1=py37hc9558a2_1
-  - bzip2=1.0.6=h14c3975_5
-  - ca-certificates=2019.11.28=hecc5488_0
-  - cairo=1.14.12=h8948797_3
-  - cairomm=1.12.2=0
-  - certifi=2019.11.28=py37_0
-  - cgal=4.13=py37he1b5a44_1
-  - cgal-cpp=4.13=h4f13b39_1
-  - cycler=0.10.0=py37_0
-  - cython=0.29.13=py37he1b5a44_0
-  - dbus=1.13.6=h746ee38_0
-  - decorator=4.4.0=py37_1
-  - defusedxml=0.5.0=py37_1
-  - entrypoints=0.3=py37_0
-  - epoxy=1.5.2=h14c3975_1
-  - expat=2.2.6=he6710b0_0
-  - fastcache=1.0.2=py37h14c3975_2
-  - ffmpeg=4.1.3=h167e202_0
-  - fontconfig=2.13.1=he4413a7_1000
-  - freetype=2.9.1=h8a8886c_1
-  - gcc_impl_linux-64=7.3.0=habb00fd_1
-  - gcc_linux-64=7.3.0=h553295d_7
-  - gdk-pixbuf=2.36.9=1
-  - glib=2.56.2=hd408876_0
-  - glob2=0.6=py37_1
-  - gmp=6.1.2=h6c8ec71_1
-  - gmpy2=2.0.8=py37h10f8cd9_2
-  - gnutls=3.6.5=hd3a4fd2_1002
-  - gobject-introspection=1.56.1=py37hbc4ca2d_2
-  - graph-tool=2.28.dev0=py37h0dcec27_0
-  - graphite2=1.3.13=h23475e2_0
-  - gsl=2.4=h14c3975_4
-  - gst-plugins-base=1.14.0=hbbd80ab_1
-  - gstreamer=1.14.0=hb453b48_1
-  - gtk3=3.22.30=h2c0c718_1
-  - gxx_impl_linux-64=7.3.0=hdf63c60_1
-  - gxx_linux-64=7.3.0=h553295d_7
-  - harfbuzz=1.8.8=hffaf4a1_0
-  - icu=58.2=h9c2bf20_1
-  - intel-openmp=2019.3=199
-  - ipykernel=5.1.0=py37h39e3cac_0
-  - ipython=7.4.0=py37h39e3cac_0
-  - ipython_genutils=0.2.0=py37_0
-  - ipywidgets=7.4.2=py37_0
-  - jedi=0.13.3=py37_0
-  - jinja2=2.10.1=py37_0
-  - jpeg=9b=h024ee3a_2
-  - jsonschema=3.0.1=py37_0
-  - jupyter=1.0.0=py37_7
-  - jupyter_client=5.2.4=py37_0
-  - jupyter_console=6.0.0=py37_0
-  - jupyter_core=4.4.0=py37_0
-  - jupyterlab=0.33.11=py37_0
-  - jupyterlab_launcher=0.11.2=py37h28b3542_0
-  - kiwisolver=1.0.1=py37hf484d3e_0
-  - lame=3.100=h14c3975_1001
-  - libcroco=0.6.12=h468c787_1001
-  - libedit=3.1.20181209=hc058e9b_0
-  - libffi=3.2.1=hd88cf55_4
-  - libgcc=7.2.0=h69d50b8_2
-  - libgcc-ng=8.2.0=hdf63c60_1
-  - libgfortran-ng=7.3.0=hdf63c60_0
-  - libiconv=1.15=h516909a_1005
-  - libpng=1.6.36=hbc83047_0
-  - librsvg=2.40.19=h84fa2a2_1000
-  - libsigcpp=2.10.0=hf484d3e_1001
-  - libsodium=1.0.16=h1bed415_0
-  - libstdcxx-ng=8.2.0=hdf63c60_1
-  - libtiff=4.0.10=h2733197_2
-  - libuuid=2.32.1=h14c3975_1000
-  - libxcb=1.13=h1bed415_1
-  - libxml2=2.9.9=he19cac6_0
-  - markupsafe=1.1.1=py37h7b6447c_0
-  - matplotlib=3.0.3=py37h5429711_0
-  - mistune=0.8.4=py37h7b6447c_0
-  - mkl=2019.3=199
-  - mkl_fft=1.0.10=py37ha843d7b_0
-  - mkl_random=1.0.2=py37hd81dba3_0
-  - more-itertools=7.0.0=py37_0
-  - mpc=1.1.0=h10f8cd9_1
-  - mpfr=4.0.1=hdf1c602_3
-  - mpmath=1.1.0=py37_0
-  - nbconvert=5.4.1=py37_3
-  - nbformat=4.4.0=py37_0
-  - ncurses=6.1=he6710b0_1
-  - nettle=3.4.1=h1bed415_1002
-  - nose=1.3.7=py37_2
-  - notebook=5.7.8=py37_0
-  - numpy=1.16.2=py37h7e9f1db_0
-  - numpy-base=1.16.2=py37hde5b4d6_0
-  - openh264=1.8.0=hdbcaa40_1000
-  - openssl=1.1.1d=h516909a_0
-  - pandoc=2.2.3.2=0
-  - pandocfilters=1.4.2=py37_1
-  - pango=1.40.14=he752989_2
-  - parso=0.4.0=py_0
-  - patsy=0.5.1=py37_0
-  - pcre=8.43=he6710b0_0
-  - pexpect=4.7.0=py37_0
-  - pickleshare=0.7.5=py37_0
-  - pip=19.0.3=py37_0
-  - pixman=0.38.0=h7b6447c_0
-  - pluggy=0.11.0=py_0
-  - prometheus_client=0.6.0=py37_0
-  - prompt_toolkit=2.0.9=py37_0
-  - ptyprocess=0.6.0=py37_0
-  - py=1.8.0=py37_0
-  - pycairo=1.18.1=py37h2a1e443_0
-  - pygments=2.3.1=py37_0
-  - pygobject=3.28.3=py37h89f6ae1_1001
-  - pyparsing=2.4.0=py_0
-  - pyqt=5.9.2=py37h05f1152_2
-  - pyrsistent=0.14.11=py37h7b6447c_0
-  - pyscaffold=3.2.1=py_0
-  - pytest=4.5.0=py37_0
-  - python=3.7.3=h0371630_0
-  - python-dateutil=2.8.0=py37_0
-  - pytz=2019.1=py_0
-  - pyzmq=18.0.0=py37he6710b0_0
-  - qt=5.9.7=h5867ecd_1
-  - qtconsole=4.4.3=py37_0
-  - readline=7.0=h7b6447c_5
-  - scipy=1.2.1=py37h7c811a0_0
-  - seaborn=0.9.0=py37_0
-  - send2trash=1.5.0=py37_0
-  - setuptools=41.0.0=py37_0
-  - sip=4.19.8=py37hf484d3e_0
-  - six=1.12.0=py37_0
-  - sparsehash=2.0.3=hf484d3e_1000
-  - sqlite=3.27.2=h7b6447c_0
-  - statsmodels=0.9.0=py37h035aef0_0
-  - sympy=1.4=py37_0
-  - terminado=0.8.2=py37_0
-  - testpath=0.4.2=py37_0
-  - tk=8.6.8=hbc83047_0
-  - tornado=6.0.2=py37h7b6447c_0
-  - tqdm=4.42.1=py_0
-  - traitlets=4.3.2=py37_0
-  - wcwidth=0.1.7=py37_0
-  - webencodings=0.5.1=py37_1
-  - wheel=0.33.1=py37_0
-  - widgetsnbextension=3.4.2=py37_0
-  - x264=1!152.20180806=h14c3975_0
-  - xorg-fixesproto=5.0=h14c3975_1002
-  - xorg-inputproto=2.3.2=h14c3975_1002
-  - xorg-kbproto=1.0.7=h14c3975_1002
-  - xorg-libice=1.0.9=h516909a_1004
-  - xorg-libsm=1.2.3=h84519dc_1000
-  - xorg-libx11=1.6.7=h14c3975_1000
-  - xorg-libxext=1.3.4=h516909a_0
-  - xorg-libxfixes=5.0.3=h516909a_1004
-  - xorg-libxi=1.7.9=h516909a_1002
-  - xorg-libxrender=0.9.10=h516909a_1002
-  - xorg-libxtst=1.2.3=h14c3975_1002
-  - xorg-recordproto=1.14.2=h14c3975_1002
-  - xorg-renderproto=0.11.1=h14c3975_1002
-  - xorg-xextproto=7.3.0=h14c3975_1002
-  - xorg-xproto=7.0.31=h14c3975_1007
-  - xz=5.2.4=h14c3975_4
-  - zeromq=4.3.1=he6710b0_3
-  - zlib=1.2.11=h7b6447c_3
-  - zstd=1.3.7=h0b5b093_0
+  - brian2=2.2
+  - matplotlib=3.0
+  - numpy=1.16
+  - pip=19.
+  - python=3.7
+  - scipy=1.5
+  - pingouin=0.3.8
+  - pandas==0.25
   - pip:
-    - aiohttp==3.6.2
-    - allensdk==1.6.0
-    - argparse==1.4.0
-    - argschema==1.17.5
-    - async-timeout==3.0.1
-    - bayesian-optimization==1.1.0
-    - brian2modelfitting==0.3
-    - chardet==3.0.4
-    - cma==2.7.0
-    - coverage==5.0.4
-    - efel==3.0.80
-    - future==0.18.2
-    - genty==1.3.2
-    - glymur==0.8.19
-    - greenlet==0.4.15
-    - h5py==2.10.0
-    - hdmf==1.0.2
-    - idna==2.9
-    - imageio==2.8.0
-    - joblib==0.14.1
-    - marshmallow==3.0.0rc6
-    - mock==4.0.2
-    - multidict==4.7.5
-    - mypy==0.770
-    - mypy-extensions==0.4.3
-    - nest-asyncio==1.2.0
-    - networkx==2.4
-    - nevergrad==0.3.0
-    - noise==1.2.2
-    - nose-timer==1.0.0
-    - numexpr==2.7.1
-    - packaging==20.3
-    - pandas==0.25.3
-    - pillow==7.1.1
-    - psycopg2-binary==2.8.4
-    - pyaml==20.3.1
-    - pynrrd==0.4.2
-    - pynwb==1.0.2
+    - opensimplex==0.3
     - pypet==0.4.3
-    - pywavelets==1.1.1
-    - pyyaml==5.3.1
-    - requests==2.23.0
-    - requests-toolbelt==0.9.1
-    - ruamel-yaml==0.16.10
-    - ruamel-yaml-clib==0.2.0
-    - scikit-build==0.10.0
-    - scikit-image==0.16.2
-    - scikit-learn==0.22.2.post1
-    - scikit-optimize==0.7.4
-    - scoop==0.7.1.1
-    - simpleitk==1.2.4
-    - simplejson==3.17.0
-    - tables==3.5.1
-    - typed-ast==1.4.1
-    - typing-extensions==3.7.4.1
-    - urllib3==1.25.8
-    - xarray==0.15.1
-    - yarl==1.4.2
-prefix: /home/pfeiffer/Applications/miniconda2/envs/interneuron_polarity
-