from common import get_example_data_root_path, initialize_test_yml_list_measurement from view.python_core.flags import FlagsManager from view.python_core.paths import get_existing_raw_data_filename from view.python_core.view_object import VIEW from view.python_core.p1_class import get_empty_p1 def load_calc_data(yml_file, animal, measus=None, flags=None): vo = VIEW() vo.update_flags_from_ymlfile(yml_filename=yml_file) if isinstance(flags, dict): vo.update_flags(flags) vo.initialize_animal(animal=animal) for measu in vo.get_measus_for_current_animal(analyze_values_to_use=(1, 2)): if measus is None or measu in measus: print(f"Doing animal={animal}, measu={measu}") vo.load_measurement_data_from_current_animal(measu=measu) vo.calculate_signals() return vo def test_loading_all_data(): yml_animal_dict = { "FakeData/test_defaults.yml": ["FakeData"], "HS_Till/usage_till.yml": ["HS_bee_PELM_180416b", "HS_bee_PELM_180424b"], "IP_Fura/usage_till.yml": ["190112_locust_ip", "190112_locust_ip2", "190529_locust_ip31"], "LM_Till_only_FID/usage_till.yml": ["LM_GC-FID_or22a_170816a", "LM_GC-FID_or22a_170816b", "LM_GC-FID_or22a_170816c"], "MR_Till/usage_till.yml": ["MR_190613c_or47a", "MR_190614a_or47a"], "MS_LSM/usage_lsm.yml": ["2020_02_06_OK107_GCaMP6f", "testview"], "Or47a_test/usage_till_test.yml": ["AL_190506a_or47a", "MR_190510b_or47a", "MR_190515b_or47a", "PG_190702a_or47a"], "SS_LSM/usage_lsm.yml": ["2019_08_15_locust_oregon green"], "Bente_Test/Bente_Test_2021.yml": ["190815_h2_El_test"], "MP_LIF/LIF_test.yml": ["sNPF_210623_bee07_res"] } example_data_root_path = get_example_data_root_path() for yml_relative_path, animals in yml_animal_dict.items(): yml_file = str(example_data_root_path / yml_relative_path) for animal in animals: load_calc_data.description \ = f"Testing loading data and signal calculation with yml={yml_relative_path} and animal={animal}" yield load_calc_data, yml_file, animal def test_loading_data_without_measurement_list(): """Testing loading data without measurement list""" example_data_root_path = get_example_data_root_path() yml_file = example_data_root_path / "HS_Till" / "usage_till.yml" animal = "HS_bee_PELM_180416b" flags = FlagsManager() flags.read_flags_from_yml(yml_file) view_obj = VIEW(flags=flags) raw_data_file \ = example_data_root_path / "HS_Till" / "data" / "HS_bee_PELM_180416b.pst" / "dbb12DF.pst" view_obj.load_measurement_data_without_list_file( LE_loadExp=3, raw_data_files=[raw_data_file], sampling_rate=1 / 0.6, animal=animal) if __name__ == '__main__': # load_calc_data( # yml_file="/home/ajay/SharedWithWindows/view_test_data/HS_Till/usage_till.yml", # animal="HS_bee_PELM_180416b") # load_calc_data( # yml_file="/home/ajay/SharedWithWindows/view_test_data/FakeData/test_defaults.yml", # animal="FakeData", flags={"LE_CalcMethod": 4}) # load_calc_data(yml_file="/mnt/data/ViewData/IP_Fura/view_flags_all_defaultsFURA.yml", # animal="190112_locust_ip2", flags={"LE_ScatteredLightFactor": 1}) # load_calc_data( # yml_file="/home/aj/SharedWithWindows/SS_LSM/usage_lsm.yml", # animal="2019_08_09_locust_calcium green") load_calc_data( yml_file="/home/ajay/pyview_test_data/Bente_Test/Bente_Test_2021.yml", animal="190815_h2_El_test") # test_loading_data_without_measurement_list()