Whisker position tracking data for the project "AirtrackMotorPlanning" (examines whether whiskers and pupil positions predict the animal's motor plans).

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Keisuke Sehara cf386c40b5 modify datacite		1 year ago
MLA005756	c9bc766ef3 migrate from the original dataset	3 years ago
MLA005757	126ea01d74 clean up missing data files	1 year ago
MLA007518	c9bc766ef3 migrate from the original dataset	3 years ago
MLA007519	c9bc766ef3 migrate from the original dataset	3 years ago
.gitignore	2a9be1e172 Initial commit	3 years ago
LICENSE	2a9be1e172 Initial commit	3 years ago
README.md	c079c52365 update ORCID	1 year ago
datacite.yml	cf386c40b5 modify datacite	1 year ago

Whisker tracking data for: Bergmann, Sehara et al., 2022

Whisker-tracking data for the project "AirtrackMotorPlanning" (examines whether whiskers and pupil positions predict the animal's motor plans).

The dataset stored here is part of the root data repository, and it is:

based on the raw dataset.
an intermediate one; for the 'final' dataset used for the analysis, refer to the formatted dataset.

File organization

File names

The files are organized as: <ANIMAL>/<SESSION>/<DOMAIN>/<ANIMAL>_<SESSION>_<DOMAIN>_run<TRIAL>, where:

ANIMAL representing the ID of the animal (in the pattern MLAxxxxxx).
SESSION being the name of the session (in the pattern sessionYYYY-MM-DD-001).
DOMAIN representing the domain of recording (see below).
TRIAL being the trial index during the session.

Domain names

Domain name	Description
projection	PNG files containing a maximal projection of top-view video frames from each single trial.
ROI	PNG files representing the mask for ROIs generated from the maximal projection images. These ROIs were used for the subsequent tracking.
mask	MP4 files containing color masks generated by color-tracking procedure of videobatch.
result	CSV files containing the center-of-mass positions of tracked whiskers (in pixels), generated by videobatch.

datacite.yml
Title	Whisker-tracking data for Bergmann, Sehara et al., 2022 eNeuro (eye-whisker coordination on Airtrack)
Authors	Bergmann,Ronny;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0002-1477-7502 Sehara,Keisuke;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0003-4368-8143 Dominiak,Sina E.;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany. Colomb,Julien;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0002-3127-5520 Kremkow,Jens;Charité–Universitätsmedizin Berlin, Berlin, 10117 Germany.;ORCID:0000-0001-7077-4528 Larkum,Matthew E.;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0001-9799-2656 Sachdev,Robert N.S.;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0002-6627-0199
Description	Data repository for Bergmann R, Sehara K, Dominiak SE, Kremkow J, Larkum ME, Sachdev RNS, 2022 eNeuro "Coordination between eye movement and whisking in head fixed mice navigating a plus-maze". This repository contains an intermediate whisker-tracking dataset based on the raw dataset.
License	Creative Commons 4.0 Attribution (https://creativecommons.org/licenses/by/4.0/)
References	Bergmann R, Sehara K, Dominiak SE, Kremkow J, Larkum ME, Sachdev RNS (2022) Coordination between eye movement and whisking in head fixed mice navigating a plus-maze. [https://doi.org/10.1523/ENEURO.0089-22.2022] (IsSupplementTo) Bergmann R, Sehara K, Dominiak SE, Colomb J, Kremkow J, Larkum ME, Sachdev RN (2022) Data for Bergmann, Sehara et al., 2022 eNeuro (eye-whisker coordination on Airtrack). G-Node. https://doi.org/10.12751/g-node.j9wxqe [https://doi.org/10.12751/g-node.j9wxqe] (IsPartOf) Bergmann R, Sehara K, Dominiak SE, Colomb J, Kremkow J, Larkum ME, Sachdev RN (2022) Raw data for Bergmann, Sehara et al., 2022 eNeuro (eye-whisker coordination on Airtrack). G-Node. https://doi.org/10.12751/g-node.g8f1jc [https://doi.org/10.12751/g-node.g8f1jc] (IsDerivedFrom) Bergmann R, Sehara K, Dominiak SE, Colomb J, Kremkow J, Larkum ME, Sachdev RN (2022) Formatted data for Bergmann, Sehara et al., 2022 eNeuro (eye-whisker coordination on Airtrack). G-Node. https://doi.org/10.12751/g-node.hhxe3v [https://doi.org/10.12751/g-node.hhxe3v] (IsSourceOf)
Funding	EU, EU.670118 EU, EU.327654276 EU, EU.720270 EU, EU.785907 EU, EU.945539 DFG, DFG.250048060 DFG, DFG.246731133 DFG, DFG.267823436
Keywords	Neuroscience Behavioral tracking Motor coordination Whiskers Pupil tracking Airtrack
Resource Type	Dataset

README.md

Whisker tracking data for: Bergmann, Sehara et al., 2022

File organization

File names

Domain names