function [datafit,Amps,freqs,Fval,sig]=fitlinesc(data,params,p,plt,f0) % fits significant sine waves to data (continuous data). % % Usage: [datafit,Amps,freqs,Fval,sig]=fitlinesc(data,params,p,plt,f0) % % Inputs: % Note that units of Fs, fpass have to be consistent. % data (data in [N,C] i.e. time x channels/trials or a single % vector) - required. % params structure containing parameters - params has the % following fields: tapers, Fs, fpass, pad % tapers : precalculated tapers from dpss or in the one of the following % forms: % (1) A numeric vector [TW K] where TW is the % time-bandwidth product and K is the number of % tapers to be used (less than or equal to % 2TW-1). % (2) A numeric vector [W T p] where W is the % bandwidth, T is the duration of the data and p % is an integer such that 2TW-p tapers are used. In % this form there is no default i.e. to specify % the bandwidth, you have to specify T and p as % well. Note that the units of W and T have to be % consistent: if W is in Hz, T must be in seconds % and vice versa. Note that these units must also % be consistent with the units of params.Fs: W can % be in Hz if and only if params.Fs is in Hz. % The default is to use form 1 with TW=3 and K=5 % % Fs (sampling frequency) -- optional. Defaults to 1. % fpass (frequency band to be used in the calculation in the form % [fmin fmax])- optional. % Default all frequencies between 0 and Fs/2 % pad (padding factor for the FFT) - optional (can take values -1,0,1,2...). % -1 corresponds to no padding, 0 corresponds to padding % to the next highest power of 2 etc. % e.g. For N = 500, if PAD = -1, we do not pad; if PAD = 0, we pad the FFT % to 512 points, if pad=1, we pad to 1024 points etc. % Defaults to 0. % p (P-value to calculate error bars for) - optional. % Defaults to 0.05/N where N is data length. % plt (y/n for plot and no plot respectively) - plots the % Fratio at all frequencies if y % f0 frequencies at which you want to remove the % lines - if unspecified the program % will compute the significant lines % % % Outputs: % datafit (linear superposition of fitted sine waves) % Amps (amplitudes at significant frequencies) % freqs (significant frequencies) % Fval (Fstatistic at all frequencies) % sig (significance level for F distribution p value of p) data=change_row_to_column(data); [N,C]=size(data); if nargin < 2 || isempty(params); params=[]; end; [tapers,pad,Fs,fpass,err,trialave,params]=getparams(params); clear pad fpass err trialave; if nargin < 3 || isempty(p);p=0.05/N;end; if nargin < 4 || isempty(plt); plt='n'; end; if nargin < 5; f0=[]; end; params.tapers=dpsschk(tapers,N,Fs); % calculate the tapers [Fval,A,f,sig] = ftestc(data,params,p,plt); if isempty(f0); fmax=findpeaks(Fval,sig); freqs=cell(1,C); Amps=cell(1,C); datafit=data; for ch=1:C; fsig=f(fmax(ch).loc); freqs{ch}=fsig; Amps{ch}=A(fmax(ch).loc,ch); Nf=length(fsig); % fprintf('The significant lines for channel %d and the amplitudes are \n',ch); % for nf=1:Nf; % fprintf('%12.8f\n',fsig(nf)); % fprintf('%12.8f\n',real(A(fmax(ch).loc(nf),ch))); % fprintf('%12.8f\n',imag(A(fmax(ch).loc(nf),ch))); % fprintf('\n'); % end; datafit(:,ch)=exp(i*2*pi*(0:N-1)'*fsig/Fs)*A(fmax(ch).loc,ch)+exp(-i*2*pi*(0:N-1)'*fsig/Fs)*conj(A(fmax(ch).loc,ch)); end; else indx = zeros( length(f0) ); for n=1:length(f0); [fsig,indx(n)]=min(abs(f-f0(n))); end; fsig=f(indx); for ch=1:C; freqs{ch}=fsig; Amps{ch}=A(indx,ch); Nf=length(fsig); % fprintf('For channel %d the amplitudes and the Fstatistic at f=%f are \n',ch,f0); % fprintf('Fstatistic = %12.8f Fthreshold = %12.8f\n',Fval(indx),sig); % fprintf('Real part of amplitude = %12.8f\n',real(A(indx,ch))); % fprintf('Imaginary part of amplitude = %12.8f\n',imag(A(indx,ch))); datafit(:,ch)=exp(i*2*pi*(0:N-1)'*fsig/Fs)*A(indx,ch)+exp(-i*2*pi*(0:N-1)'*fsig/Fs)*conj(A(indx,ch)); end; end;