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Delete 'MatlabScripts/a_NexExtract.m'

David Ottenheimer 5 years ago
parent
commit
8fc18f6c06
1 changed files with 0 additions and 50 deletions
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      MatlabScripts/a_NexExtract.m

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MatlabScripts/a_NexExtract.m

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-%% create a struct with timestamps of all neurons and events
-
-%before starting:
-%put all nex files in the same folder
-%name of each file starts with "NA1" or corresponding region and rat
-%for water and 3 rewards sessions, "WA1" or "TH1" (all VP)
-
-%need supporting programs "readNexFile" and "myfind"
-
-clear all;clc 
-SAVE_FLAG=1;
-tic
-
-address=['C:\Users\dottenh2\Documents\MATLAB\David\2Rewards Nex Files'];
-
-AF=dir([address,'\\*.nex']);
-Sesnum=0;
-for k=1:length(AF)
-      
-        fname=AF(k).name;
-        [nexfile] = readNexFile([address,'\\',fname]);  fprintf([fname,'\n'])
-        Iind=myfind(nexfile.intervals,'AllFile'); 
-        Sesnum=Sesnum+1;
-        % Get all events timestamps for the selected session
-        NUM_EVENTS=length(nexfile.events);
-        for j=1:NUM_EVENTS
-            evt=nexfile.events{j}.timestamps;
-            RAW(Sesnum).Erast{j,1}=evt(find((evt>nexfile.intervals{Iind}.intStarts) & (evt<nexfile.intervals{Iind}.intEnds)));
-            RAW(Sesnum).Einfo(j,:)={fname,nexfile.events{j}.name};
-        end
-        % start from neuron 1 get ready for the next session
-        
-        % Get the Neuron timestamps and waveforms
-       NUM_NEURONS=length(nexfile.neurons);
-        for j=1:NUM_NEURONS
-            nrn=nexfile.neurons{j}.timestamps;
-            RAW(Sesnum).Nrast{j,1}=nrn(find((nrn>nexfile.intervals{Iind}.intStarts) & (nrn<nexfile.intervals{Iind}.intEnds)));
-            RAW(Sesnum).Ninfo(j,:)={fname,nexfile.neurons{j}.name};
-        end
-        
-        RAW(Sesnum).Type=fname(1:3);
-    
-end
-toc   
-%% SAVING DATA
-if SAVE_FLAG
-    save('RAW.mat','RAW')
-end
-fprintf('\n')
-toc