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Nathaniel Glassy 5 months ago
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commit
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35 changed files with 5319 additions and 0 deletions
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+ 65 - 0
Subject 36/sub-36_T1w.json

@@ -0,0 +1,65 @@
+{
+	"Modality": "MR",
+	"MagneticFieldStrength": 3,
+	"ImagingFrequency": 123.25,
+	"Manufacturer": "Siemens",
+	"ManufacturersModelName": "TrioTim",
+	"InstitutionName": "Neuroscience Imaging Center",
+	"InstitutionAddress": "Irving St 1,-D6CCEA- San Francisco,CA,US,94122",
+	"DeviceSerialNumber": "35229",
+	"StationName": "MRC35229",
+	"PatientPosition": "HFS",
+	"ProcedureStepDescription": "Nagarajan_Lab^temp",
+	"SoftwareVersions": "syngo MR B15",
+	"MRAcquisitionType": "3D",
+	"SeriesDescription": "t1_mprage",
+	"ProtocolName": "t1_mprage",
+	"ScanningSequence": "GR\\IR",
+	"SequenceVariant": "SP\\MP\\OSP",
+	"ScanOptions": "IR",
+	"SequenceName": "*tfl3d1_ns",
+	"ImageType": ["ORIGINAL", "PRIMARY", "M", "ND", "NORM"],
+	"SeriesNumber": 3,
+	"AcquisitionNumber": 1,
+	"SliceThickness": 1,
+	"SAR": 0.0947418,
+	"EchoTime": 0.00298,
+	"RepetitionTime": 2.3,
+	"InversionTime": 0.9,
+	"FlipAngle": 9,
+	"PartialFourier": 1,
+	"BaseResolution": 256,
+	"ShimSetting": [
+		8000,
+		-5743,
+		-2945,
+		10,
+		-174,
+		-357,
+		32,
+		-12	],
+	"TxRefAmp": 362.422,
+	"PhaseResolution": 0.96,
+	"ReceiveCoilName": "HeadMatrix",
+	"CoilString": "T:HEA;HEP",
+	"PulseSequenceDetails": "%SiemensSeq%\\tfl",
+	"RefLinesPE": 24,
+	"PercentPhaseFOV": 93.75,
+	"PercentSampling": 96,
+	"PhaseEncodingSteps": 230,
+	"AcquisitionMatrixPE": 230,
+	"ReconMatrixPE": 240,
+	"ParallelReductionFactorInPlane": 2,
+	"PixelBandwidth": 240,
+	"DwellTime": 8.2e-06,
+	"ImageOrientationPatientDICOM": [
+		-0.0418326,
+		0.998094,
+		-0.045363,
+		0.0018996,
+		-0.0453232,
+		-0.998971	],
+	"InPlanePhaseEncodingDirectionDICOM": "ROW",
+	"ConversionSoftware": "dcm2niix",
+	"ConversionSoftwareVersion": "v1.0.20210317"
+}

+ 1 - 0
Subject 36/sub-36_T1w.nii

@@ -0,0 +1 @@
+/annex/objects/MD5-s19661152--f4a431b82cb88e248d4629cc98b2b8ef

BIN
Subject 36/sub-36_task-arrow_run-1.ds/BadChannels


+ 26 - 0
Subject 36/sub-36_task-arrow_run-1.ds/ClassFile.cls

@@ -0,0 +1,26 @@
+PATH OF DATASET:
+/data/research_meg2/leighton/lizraw/sub-36/WehnerDarlene/raw/sub-36_task-arrow_run-1.ds
+
+
+NUMBER OF CLASSES:
+1
+
+
+CLASSGROUPID:
+3
+NAME:
+BAD
+COMMENT:
+
+COLOR:
+Red
+EDITABLE:
+Yes
+CLASSID:
+1
+NUMBER OF TRIALS:
+0
+LIST OF TRIALS:
+TRIAL NUMBER
+
+

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+ 1582 - 0
Subject 36/sub-36_task-arrow_run-1.ds/MarkerFile.mrk


BIN
Subject 36/sub-36_task-arrow_run-1.ds/bad.segments


+ 32 - 0
Subject 36/sub-36_task-arrow_run-1.ds/params.dsc

@@ -0,0 +1,32 @@
+
+// Head Localization parameters.
+// 08-Jun-2021 09:03
+
+CustomDs
+{
+	FixSensors:	False
+}
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+}
+
+// Data selector parameters.
+DsSelector
+{
+	RejectBadTrials:	FALSE
+	ForceEvenNumTargets:	FALSE
+	MaximumOverlap:	0
+	StartTime:	-0
+	EndTime:	5
+	EventRange:	ALL
+	WholeTrial:	TRUE
+	CondSearchStart:	0
+	CondSearchEnd:	0
+	TargetTrialOffset:	0
+}

+ 33 - 0
Subject 36/sub-36_task-arrow_run-1.ds/processing.cfg

@@ -0,0 +1,33 @@
+// Processing configuration.
+// 09:03  08/06/2021
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+	// lowpass: enable, filterOrder, fc
+	lowpass:	0,4,0.00000000000000000
+	// highpass: enable, filterOrder, fc
+	highpass:	0,4,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,4,0.00000000000000000,0.00000000000000000
+	// bandpass: enable, filterOrder, fc1, fc2
+	bandpass:	0,4,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// offset: enable, baselineSelection, startPt, endPt
+	// (baseline=0 --> use pretrigger data)
+	// (baseline=1 --> use from startPt to endPt)
+	// (baseline=2 --> use whole trial)
+	// (baseline+=10 --> do trend removal)
+	offset:	0,0,1,1
+}

+ 37 - 0
Subject 36/sub-36_task-arrow_run-1.ds/sub-36_task-arrow_run-1.hc

@@ -0,0 +1,37 @@
+standard nasion coil position relative to dewar (cm):
+	x = 5.65685
+	y = 5.65685
+	z = -27
+standard left ear coil position relative to dewar (cm):
+	x = -5.65685
+	y = 5.65685
+	z = -27
+standard right ear coil position relative to dewar (cm):
+	x = 5.65685
+	y = -5.65685
+	z = -27
+measured nasion coil position relative to dewar (cm):
+	x = 6.59647
+	y = 6.63609
+	z = -24.5553
+measured left ear coil position relative to dewar (cm):
+	x = -4.69164
+	y = 5.59775
+	z = -26.1328
+measured right ear coil position relative to dewar (cm):
+	x = 5.8735
+	y = -4.58175
+	z = -26.4885
+measured nasion coil position relative to head (cm):
+	x = 8.75792
+	y = -1.44329e-15
+	z = -3.55271e-15
+measured left ear coil position relative to head (cm):
+	x = -0.025353
+	y = 7.33772
+	z = -1.06581e-14
+measured right ear coil position relative to head (cm):
+	x = 0.025353
+	y = -7.33772
+	z = 3.55271e-15
+

BIN
Subject 36/sub-36_task-arrow_run-1.ds/sub-36_task-arrow_run-1.infods


+ 1 - 0
Subject 36/sub-36_task-arrow_run-1.ds/sub-36_task-arrow_run-1.meg4

@@ -0,0 +1 @@
+/annex/objects/MD5-s1932480008--e825a8fe10b064713638412ecfef510c

+ 17 - 0
Subject 36/sub-36_task-arrow_run-1.ds/sub-36_task-arrow_run-1.newds

@@ -0,0 +1,17 @@
+// 
+// These parameters will appear in the new dataset.
+// 
+NewDatasetFields
+{
+	site:	
+	system:	DSQ-2010
+	institute:	
+	protocol:	parkinsons.rp
+	purpose:	
+	keywords:	parkinson, Liz
+	coefsName:	/opt/ctf/hardware/M021/M021_2205.coef
+	sensName:	/opt/ctf/hardware/M021/M021_2205.sens
+	appName:	Acq patch3-4.17-linux-20040429
+	systemType:	cmeg
+	bandwidth:	0.000000, 300.000000
+}

BIN
Subject 36/sub-36_task-arrow_run-1.ds/sub-36_task-arrow_run-1.res4


BIN
Subject 36/sub-36_task-arrow_run-2.ds/BadChannels


+ 26 - 0
Subject 36/sub-36_task-arrow_run-2.ds/ClassFile.cls

@@ -0,0 +1,26 @@
+PATH OF DATASET:
+/data/research_meg2/leighton/lizraw/sub-36/WehnerDarlene/raw/sub-36_task-arrow_run-2.ds
+
+
+NUMBER OF CLASSES:
+1
+
+
+CLASSGROUPID:
+3
+NAME:
+BAD
+COMMENT:
+
+COLOR:
+Red
+EDITABLE:
+Yes
+CLASSID:
+1
+NUMBER OF TRIALS:
+0
+LIST OF TRIALS:
+TRIAL NUMBER
+
+

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+ 1609 - 0
Subject 36/sub-36_task-arrow_run-2.ds/MarkerFile.mrk


BIN
Subject 36/sub-36_task-arrow_run-2.ds/bad.segments


+ 32 - 0
Subject 36/sub-36_task-arrow_run-2.ds/params.dsc

@@ -0,0 +1,32 @@
+
+// Head Localization parameters.
+// 08-Jun-2021 09:04
+
+CustomDs
+{
+	FixSensors:	False
+}
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+}
+
+// Data selector parameters.
+DsSelector
+{
+	RejectBadTrials:	FALSE
+	ForceEvenNumTargets:	FALSE
+	MaximumOverlap:	0
+	StartTime:	-0
+	EndTime:	5
+	EventRange:	ALL
+	WholeTrial:	TRUE
+	CondSearchStart:	0
+	CondSearchEnd:	0
+	TargetTrialOffset:	0
+}

+ 33 - 0
Subject 36/sub-36_task-arrow_run-2.ds/processing.cfg

@@ -0,0 +1,33 @@
+// Processing configuration.
+// 09:04  08/06/2021
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+	// lowpass: enable, filterOrder, fc
+	lowpass:	0,4,0.00000000000000000
+	// highpass: enable, filterOrder, fc
+	highpass:	0,4,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,4,0.00000000000000000,0.00000000000000000
+	// bandpass: enable, filterOrder, fc1, fc2
+	bandpass:	0,4,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// offset: enable, baselineSelection, startPt, endPt
+	// (baseline=0 --> use pretrigger data)
+	// (baseline=1 --> use from startPt to endPt)
+	// (baseline=2 --> use whole trial)
+	// (baseline+=10 --> do trend removal)
+	offset:	0,0,1,1
+}

+ 37 - 0
Subject 36/sub-36_task-arrow_run-2.ds/sub-36_task-arrow_run-2.hc

@@ -0,0 +1,37 @@
+standard nasion coil position relative to dewar (cm):
+	x = 5.65685
+	y = 5.65685
+	z = -27
+standard left ear coil position relative to dewar (cm):
+	x = -5.65685
+	y = 5.65685
+	z = -27
+standard right ear coil position relative to dewar (cm):
+	x = 5.65685
+	y = -5.65685
+	z = -27
+measured nasion coil position relative to dewar (cm):
+	x = 6.57638
+	y = 6.55505
+	z = -24.5701
+measured left ear coil position relative to dewar (cm):
+	x = -4.75882
+	y = 5.54575
+	z = -26.2037
+measured right ear coil position relative to dewar (cm):
+	x = 5.89287
+	y = -4.62316
+	z = -26.3903
+measured nasion coil position relative to head (cm):
+	x = 8.7309
+	y = 1.4988e-15
+	z = 3.55271e-15
+measured left ear coil position relative to head (cm):
+	x = -0.0985472
+	y = 7.3631
+	z = 3.55271e-15
+measured right ear coil position relative to head (cm):
+	x = 0.0985472
+	y = -7.3631
+	z = 3.55271e-15
+

BIN
Subject 36/sub-36_task-arrow_run-2.ds/sub-36_task-arrow_run-2.infods


+ 1 - 0
Subject 36/sub-36_task-arrow_run-2.ds/sub-36_task-arrow_run-2.meg4

@@ -0,0 +1 @@
+/annex/objects/MD5-s1925160008--78e7b75e54cc83b006340564f18bb48c

+ 17 - 0
Subject 36/sub-36_task-arrow_run-2.ds/sub-36_task-arrow_run-2.newds

@@ -0,0 +1,17 @@
+// 
+// These parameters will appear in the new dataset.
+// 
+NewDatasetFields
+{
+	site:	
+	system:	DSQ-2010
+	institute:	
+	protocol:	parkinsons.rp
+	purpose:	
+	keywords:	parkinson, Liz
+	coefsName:	/opt/ctf/hardware/M021/M021_2205.coef
+	sensName:	/opt/ctf/hardware/M021/M021_2205.sens
+	appName:	Acq patch3-4.17-linux-20040429
+	systemType:	cmeg
+	bandwidth:	0.000000, 300.000000
+}

BIN
Subject 36/sub-36_task-arrow_run-2.ds/sub-36_task-arrow_run-2.res4


BIN
Subject 36/sub-36_task-arrow_run-3.ds/BadChannels


+ 26 - 0
Subject 36/sub-36_task-arrow_run-3.ds/ClassFile.cls

@@ -0,0 +1,26 @@
+PATH OF DATASET:
+/data/research_meg2/leighton/lizraw/sub-36/WehnerDarlene/raw/sub-36_task-arrow_run-3.ds
+
+
+NUMBER OF CLASSES:
+1
+
+
+CLASSGROUPID:
+3
+NAME:
+BAD
+COMMENT:
+
+COLOR:
+Red
+EDITABLE:
+Yes
+CLASSID:
+1
+NUMBER OF TRIALS:
+0
+LIST OF TRIALS:
+TRIAL NUMBER
+
+

File diff suppressed because it is too large
+ 1624 - 0
Subject 36/sub-36_task-arrow_run-3.ds/MarkerFile.mrk


BIN
Subject 36/sub-36_task-arrow_run-3.ds/bad.segments


+ 32 - 0
Subject 36/sub-36_task-arrow_run-3.ds/params.dsc

@@ -0,0 +1,32 @@
+
+// Head Localization parameters.
+// 08-Jun-2021 09:09
+
+CustomDs
+{
+	FixSensors:	False
+}
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+}
+
+// Data selector parameters.
+DsSelector
+{
+	RejectBadTrials:	FALSE
+	ForceEvenNumTargets:	FALSE
+	MaximumOverlap:	0
+	StartTime:	-0
+	EndTime:	5
+	EventRange:	ALL
+	WholeTrial:	TRUE
+	CondSearchStart:	0
+	CondSearchEnd:	0
+	TargetTrialOffset:	0
+}

+ 33 - 0
Subject 36/sub-36_task-arrow_run-3.ds/processing.cfg

@@ -0,0 +1,33 @@
+// Processing configuration.
+// 09:09  08/06/2021
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+	// lowpass: enable, filterOrder, fc
+	lowpass:	0,4,0.00000000000000000
+	// highpass: enable, filterOrder, fc
+	highpass:	0,4,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,4,0.00000000000000000,0.00000000000000000
+	// bandpass: enable, filterOrder, fc1, fc2
+	bandpass:	0,4,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// offset: enable, baselineSelection, startPt, endPt
+	// (baseline=0 --> use pretrigger data)
+	// (baseline=1 --> use from startPt to endPt)
+	// (baseline=2 --> use whole trial)
+	// (baseline+=10 --> do trend removal)
+	offset:	0,0,1,1
+}

+ 37 - 0
Subject 36/sub-36_task-arrow_run-3.ds/sub-36_task-arrow_run-3.hc

@@ -0,0 +1,37 @@
+standard nasion coil position relative to dewar (cm):
+	x = 5.65685
+	y = 5.65685
+	z = -27
+standard left ear coil position relative to dewar (cm):
+	x = -5.65685
+	y = 5.65685
+	z = -27
+standard right ear coil position relative to dewar (cm):
+	x = 5.65685
+	y = -5.65685
+	z = -27
+measured nasion coil position relative to dewar (cm):
+	x = 6.539
+	y = 6.51142
+	z = -24.6934
+measured left ear coil position relative to dewar (cm):
+	x = -4.89018
+	y = 5.46048
+	z = -26.257
+measured right ear coil position relative to dewar (cm):
+	x = 5.86637
+	y = -4.68719
+	z = -26.2992
+measured nasion coil position relative to head (cm):
+	x = 8.75429
+	y = -5.55112e-16
+	z = -3.55271e-15
+measured left ear coil position relative to head (cm):
+	x = -0.1638
+	y = 7.39211
+	z = 2.4869e-14
+measured right ear coil position relative to head (cm):
+	x = 0.1638
+	y = -7.39211
+	z = -3.19744e-14
+

BIN
Subject 36/sub-36_task-arrow_run-3.ds/sub-36_task-arrow_run-3.infods


+ 1 - 0
Subject 36/sub-36_task-arrow_run-3.ds/sub-36_task-arrow_run-3.meg4

@@ -0,0 +1 @@
+/annex/objects/MD5-s1932480008--bc788be4bfab60adaa7168972ba587f5

+ 17 - 0
Subject 36/sub-36_task-arrow_run-3.ds/sub-36_task-arrow_run-3.newds

@@ -0,0 +1,17 @@
+// 
+// These parameters will appear in the new dataset.
+// 
+NewDatasetFields
+{
+	site:	
+	system:	DSQ-2010
+	institute:	
+	protocol:	parkinsons.rp
+	purpose:	
+	keywords:	parkinson, Liz
+	coefsName:	/opt/ctf/hardware/M021/M021_2205.coef
+	sensName:	/opt/ctf/hardware/M021/M021_2205.sens
+	appName:	Acq patch3-4.17-linux-20040429
+	systemType:	cmeg
+	bandwidth:	0.000000, 300.000000
+}

BIN
Subject 36/sub-36_task-arrow_run-3.ds/sub-36_task-arrow_run-3.res4