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Nathaniel Glassy 5 months ago
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commit
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35 changed files with 5091 additions and 0 deletions
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      Subject 24/sub-24_T1w.json
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      Subject 24/sub-24_T1w.nii
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+ 65 - 0
Subject 24/sub-24_T1w.json

@@ -0,0 +1,65 @@
+{
+	"Modality": "MR",
+	"MagneticFieldStrength": 3,
+	"ImagingFrequency": 123.255,
+	"Manufacturer": "Siemens",
+	"ManufacturersModelName": "TrioTim",
+	"InstitutionName": "Neuroscience Imaging Center",
+	"InstitutionAddress": "Irving St 1,-B73CEA- San Francisco,CA,US,94122",
+	"DeviceSerialNumber": "35229",
+	"StationName": "MRC35229",
+	"PatientPosition": "HFS",
+	"ProcedureStepDescription": "Nagarajan_Lab^temp",
+	"SoftwareVersions": "syngo MR B15",
+	"MRAcquisitionType": "3D",
+	"SeriesDescription": "t1_mprage",
+	"ProtocolName": "t1_mprage",
+	"ScanningSequence": "GR\\IR",
+	"SequenceVariant": "SP\\MP\\OSP",
+	"ScanOptions": "IR",
+	"SequenceName": "*tfl3d1_ns",
+	"ImageType": ["ORIGINAL", "PRIMARY", "M", "ND", "NORM"],
+	"SeriesNumber": 3,
+	"AcquisitionNumber": 1,
+	"SliceThickness": 1,
+	"SAR": 0.0814777,
+	"EchoTime": 0.00298,
+	"RepetitionTime": 2.3,
+	"InversionTime": 0.9,
+	"FlipAngle": 9,
+	"PartialFourier": 1,
+	"BaseResolution": 256,
+	"ShimSetting": [
+		8050,
+		-5545,
+		-2977,
+		91,
+		42,
+		66,
+		85,
+		-79	],
+	"TxRefAmp": 305.553,
+	"PhaseResolution": 0.96,
+	"ReceiveCoilName": "HeadMatrix",
+	"CoilString": "T:HEA;HEP",
+	"PulseSequenceDetails": "%SiemensSeq%\\tfl",
+	"RefLinesPE": 24,
+	"PercentPhaseFOV": 93.75,
+	"PercentSampling": 96,
+	"PhaseEncodingSteps": 230,
+	"AcquisitionMatrixPE": 230,
+	"ReconMatrixPE": 240,
+	"ParallelReductionFactorInPlane": 2,
+	"PixelBandwidth": 240,
+	"DwellTime": 8.2e-06,
+	"ImageOrientationPatientDICOM": [
+		0.0974279,
+		0.95916,
+		-0.265556,
+		-0.0268362,
+		-0.264197,
+		-0.964095	],
+	"InPlanePhaseEncodingDirectionDICOM": "ROW",
+	"ConversionSoftware": "dcm2niix",
+	"ConversionSoftwareVersion": "v1.0.20210317"
+}

+ 1 - 0
Subject 24/sub-24_T1w.nii

@@ -0,0 +1 @@
+/annex/objects/MD5-s19661152--db46a3736fca24650623cb74b1b29934

BIN
Subject 24/sub-24_task-arrow_run-1.ds/BadChannels


+ 26 - 0
Subject 24/sub-24_task-arrow_run-1.ds/ClassFile.cls

@@ -0,0 +1,26 @@
+PATH OF DATASET:
+/data/research_meg13/leighton/lizraw/controls/sub-24_task-arrow_run-1.ds
+
+
+NUMBER OF CLASSES:
+1
+
+
+CLASSGROUPID:
+3
+NAME:
+BAD
+COMMENT:
+
+COLOR:
+Red
+EDITABLE:
+Yes
+CLASSID:
+1
+NUMBER OF TRIALS:
+0
+LIST OF TRIALS:
+TRIAL NUMBER
+
+

File diff suppressed because it is too large
+ 1566 - 0
Subject 24/sub-24_task-arrow_run-1.ds/MarkerFile.mrk


BIN
Subject 24/sub-24_task-arrow_run-1.ds/bad.segments


+ 32 - 0
Subject 24/sub-24_task-arrow_run-1.ds/params.dsc

@@ -0,0 +1,32 @@
+
+// Head Localization parameters.
+// 22-May-2021 09:21
+
+CustomDs
+{
+	FixSensors:	False
+}
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+}
+
+// Data selector parameters.
+DsSelector
+{
+	RejectBadTrials:	FALSE
+	ForceEvenNumTargets:	FALSE
+	MaximumOverlap:	0
+	StartTime:	-0
+	EndTime:	5
+	EventRange:	ALL
+	WholeTrial:	TRUE
+	CondSearchStart:	0
+	CondSearchEnd:	0
+	TargetTrialOffset:	0
+}

+ 33 - 0
Subject 24/sub-24_task-arrow_run-1.ds/processing.cfg

@@ -0,0 +1,33 @@
+// Processing configuration.
+// 09:21  22/05/2021
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+	// lowpass: enable, filterOrder, fc
+	lowpass:	0,4,0.00000000000000000
+	// highpass: enable, filterOrder, fc
+	highpass:	0,4,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,4,0.00000000000000000,0.00000000000000000
+	// bandpass: enable, filterOrder, fc1, fc2
+	bandpass:	0,4,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// offset: enable, baselineSelection, startPt, endPt
+	// (baseline=0 --> use pretrigger data)
+	// (baseline=1 --> use from startPt to endPt)
+	// (baseline=2 --> use whole trial)
+	// (baseline+=10 --> do trend removal)
+	offset:	0,0,1,1
+}

+ 37 - 0
Subject 24/sub-24_task-arrow_run-1.ds/sub-24_task-arrow_run-1.hc

@@ -0,0 +1,37 @@
+standard nasion coil position relative to dewar (cm):
+	x = 5.65685
+	y = 5.65685
+	z = -27
+standard left ear coil position relative to dewar (cm):
+	x = -5.65685
+	y = 5.65685
+	z = -27
+standard right ear coil position relative to dewar (cm):
+	x = 5.65685
+	y = -5.65685
+	z = -27
+measured nasion coil position relative to dewar (cm):
+	x = 6.72363
+	y = 6.77106
+	z = -25.3576
+measured left ear coil position relative to dewar (cm):
+	x = -5.05012
+	y = 5.36603
+	z = -27.0207
+measured right ear coil position relative to dewar (cm):
+	x = 5.19212
+	y = -4.97025
+	z = -27.4645
+measured nasion coil position relative to head (cm):
+	x = 9.5403
+	y = 0
+	z = -3.55271e-15
+measured left ear coil position relative to head (cm):
+	x = 0.033587
+	y = 7.27899
+	z = -2.13163e-14
+measured right ear coil position relative to head (cm):
+	x = -0.033587
+	y = -7.27899
+	z = 1.77636e-14
+

BIN
Subject 24/sub-24_task-arrow_run-1.ds/sub-24_task-arrow_run-1.infods


+ 1 - 0
Subject 24/sub-24_task-arrow_run-1.ds/sub-24_task-arrow_run-1.meg4

@@ -0,0 +1 @@
+/annex/objects/MD5-s1961760008--db768fd6195e82e88bf1e189f39190d0

+ 17 - 0
Subject 24/sub-24_task-arrow_run-1.ds/sub-24_task-arrow_run-1.newds

@@ -0,0 +1,17 @@
+// 
+// These parameters will appear in the new dataset.
+// 
+NewDatasetFields
+{
+	site:	
+	system:	DSQ-2010
+	institute:	
+	protocol:	parkinsons.rp
+	purpose:	
+	keywords:	parkinson, Liz
+	coefsName:	/opt/ctf/hardware/M021/M021_2205.coef
+	sensName:	/opt/ctf/hardware/M021/M021_2205.sens
+	appName:	Acq patch3-4.17-linux-20040429
+	systemType:	cmeg
+	bandwidth:	0.000000, 300.000000
+}

BIN
Subject 24/sub-24_task-arrow_run-1.ds/sub-24_task-arrow_run-1.res4


BIN
Subject 24/sub-24_task-arrow_run-2.ds/BadChannels


+ 26 - 0
Subject 24/sub-24_task-arrow_run-2.ds/ClassFile.cls

@@ -0,0 +1,26 @@
+PATH OF DATASET:
+/data/research_meg13/leighton/lizraw/controls/sub-24_task-arrow_run-2.ds
+
+
+NUMBER OF CLASSES:
+1
+
+
+CLASSGROUPID:
+3
+NAME:
+BAD
+COMMENT:
+
+COLOR:
+Red
+EDITABLE:
+Yes
+CLASSID:
+1
+NUMBER OF TRIALS:
+0
+LIST OF TRIALS:
+TRIAL NUMBER
+
+

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+ 1497 - 0
Subject 24/sub-24_task-arrow_run-2.ds/MarkerFile.mrk


BIN
Subject 24/sub-24_task-arrow_run-2.ds/bad.segments


+ 32 - 0
Subject 24/sub-24_task-arrow_run-2.ds/params.dsc

@@ -0,0 +1,32 @@
+
+// Head Localization parameters.
+// 22-May-2021 09:22
+
+CustomDs
+{
+	FixSensors:	False
+}
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+}
+
+// Data selector parameters.
+DsSelector
+{
+	RejectBadTrials:	FALSE
+	ForceEvenNumTargets:	FALSE
+	MaximumOverlap:	0
+	StartTime:	-0
+	EndTime:	5
+	EventRange:	ALL
+	WholeTrial:	TRUE
+	CondSearchStart:	0
+	CondSearchEnd:	0
+	TargetTrialOffset:	0
+}

+ 33 - 0
Subject 24/sub-24_task-arrow_run-2.ds/processing.cfg

@@ -0,0 +1,33 @@
+// Processing configuration.
+// 09:21  22/05/2021
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+	// lowpass: enable, filterOrder, fc
+	lowpass:	0,4,0.00000000000000000
+	// highpass: enable, filterOrder, fc
+	highpass:	0,4,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,4,0.00000000000000000,0.00000000000000000
+	// bandpass: enable, filterOrder, fc1, fc2
+	bandpass:	0,4,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// offset: enable, baselineSelection, startPt, endPt
+	// (baseline=0 --> use pretrigger data)
+	// (baseline=1 --> use from startPt to endPt)
+	// (baseline=2 --> use whole trial)
+	// (baseline+=10 --> do trend removal)
+	offset:	0,0,1,1
+}

+ 37 - 0
Subject 24/sub-24_task-arrow_run-2.ds/sub-24_task-arrow_run-2.hc

@@ -0,0 +1,37 @@
+standard nasion coil position relative to dewar (cm):
+	x = 5.65685
+	y = 5.65685
+	z = -27
+standard left ear coil position relative to dewar (cm):
+	x = -5.65685
+	y = 5.65685
+	z = -27
+standard right ear coil position relative to dewar (cm):
+	x = 5.65685
+	y = -5.65685
+	z = -27
+measured nasion coil position relative to dewar (cm):
+	x = 6.68757
+	y = 6.79538
+	z = -25.2222
+measured left ear coil position relative to dewar (cm):
+	x = -5.06715
+	y = 5.38893
+	z = -26.9419
+measured right ear coil position relative to dewar (cm):
+	x = 5.18838
+	y = -4.93437
+	z = -27.4115
+measured nasion coil position relative to head (cm):
+	x = 9.53293
+	y = -5.55112e-16
+	z = 0
+measured left ear coil position relative to head (cm):
+	x = 0.039827
+	y = 7.27943
+	z = -7.10543e-15
+measured right ear coil position relative to head (cm):
+	x = -0.039827
+	y = -7.27943
+	z = 7.10543e-15
+

BIN
Subject 24/sub-24_task-arrow_run-2.ds/sub-24_task-arrow_run-2.infods


+ 1 - 0
Subject 24/sub-24_task-arrow_run-2.ds/sub-24_task-arrow_run-2.meg4

@@ -0,0 +1 @@
+/annex/objects/MD5-s1932480008--e0f37d8b237233e6747b71a8ef3b7683

+ 17 - 0
Subject 24/sub-24_task-arrow_run-2.ds/sub-24_task-arrow_run-2.newds

@@ -0,0 +1,17 @@
+// 
+// These parameters will appear in the new dataset.
+// 
+NewDatasetFields
+{
+	site:	
+	system:	DSQ-2010
+	institute:	
+	protocol:	parkinsons.rp
+	purpose:	
+	keywords:	parkinson, Liz
+	coefsName:	/opt/ctf/hardware/M021/M021_2205.coef
+	sensName:	/opt/ctf/hardware/M021/M021_2205.sens
+	appName:	Acq patch3-4.17-linux-20040429
+	systemType:	cmeg
+	bandwidth:	0.000000, 300.000000
+}

BIN
Subject 24/sub-24_task-arrow_run-2.ds/sub-24_task-arrow_run-2.res4


BIN
Subject 24/sub-24_task-arrow_run-3.ds/BadChannels


+ 26 - 0
Subject 24/sub-24_task-arrow_run-3.ds/ClassFile.cls

@@ -0,0 +1,26 @@
+PATH OF DATASET:
+/data/research_meg13/leighton/lizraw/controls/sub-24_task-arrow_run-3.ds
+
+
+NUMBER OF CLASSES:
+1
+
+
+CLASSGROUPID:
+3
+NAME:
+BAD
+COMMENT:
+
+COLOR:
+Red
+EDITABLE:
+Yes
+CLASSID:
+1
+NUMBER OF TRIALS:
+0
+LIST OF TRIALS:
+TRIAL NUMBER
+
+

File diff suppressed because it is too large
+ 1524 - 0
Subject 24/sub-24_task-arrow_run-3.ds/MarkerFile.mrk


BIN
Subject 24/sub-24_task-arrow_run-3.ds/bad.segments


+ 32 - 0
Subject 24/sub-24_task-arrow_run-3.ds/params.dsc

@@ -0,0 +1,32 @@
+
+// Head Localization parameters.
+// 22-May-2021 09:23
+
+CustomDs
+{
+	FixSensors:	False
+}
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+}
+
+// Data selector parameters.
+DsSelector
+{
+	RejectBadTrials:	FALSE
+	ForceEvenNumTargets:	FALSE
+	MaximumOverlap:	0
+	StartTime:	-0
+	EndTime:	5
+	EventRange:	ALL
+	WholeTrial:	TRUE
+	CondSearchStart:	0
+	CondSearchEnd:	0
+	TargetTrialOffset:	0
+}

+ 33 - 0
Subject 24/sub-24_task-arrow_run-3.ds/processing.cfg

@@ -0,0 +1,33 @@
+// Processing configuration.
+// 09:23  22/05/2021
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+	// lowpass: enable, filterOrder, fc
+	lowpass:	0,4,0.00000000000000000
+	// highpass: enable, filterOrder, fc
+	highpass:	0,4,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,4,0.00000000000000000,0.00000000000000000
+	// bandpass: enable, filterOrder, fc1, fc2
+	bandpass:	0,4,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// offset: enable, baselineSelection, startPt, endPt
+	// (baseline=0 --> use pretrigger data)
+	// (baseline=1 --> use from startPt to endPt)
+	// (baseline=2 --> use whole trial)
+	// (baseline+=10 --> do trend removal)
+	offset:	0,0,1,1
+}

+ 37 - 0
Subject 24/sub-24_task-arrow_run-3.ds/sub-24_task-arrow_run-3.hc

@@ -0,0 +1,37 @@
+standard nasion coil position relative to dewar (cm):
+	x = 5.65685
+	y = 5.65685
+	z = -27
+standard left ear coil position relative to dewar (cm):
+	x = -5.65685
+	y = 5.65685
+	z = -27
+standard right ear coil position relative to dewar (cm):
+	x = 5.65685
+	y = -5.65685
+	z = -27
+measured nasion coil position relative to dewar (cm):
+	x = 6.71458
+	y = 6.78889
+	z = -25.0667
+measured left ear coil position relative to dewar (cm):
+	x = -5.03807
+	y = 5.40228
+	z = -26.8529
+measured right ear coil position relative to dewar (cm):
+	x = 5.22247
+	y = -4.92381
+	z = -27.3025
+measured nasion coil position relative to head (cm):
+	x = 9.5288
+	y = 2.22045e-16
+	z = 3.55271e-15
+measured left ear coil position relative to head (cm):
+	x = 0.0308253
+	y = 7.28191
+	z = 1.06581e-14
+measured right ear coil position relative to head (cm):
+	x = -0.0308253
+	y = -7.28191
+	z = -3.55271e-15
+

BIN
Subject 24/sub-24_task-arrow_run-3.ds/sub-24_task-arrow_run-3.infods


+ 1 - 0
Subject 24/sub-24_task-arrow_run-3.ds/sub-24_task-arrow_run-3.meg4

@@ -0,0 +1 @@
+/annex/objects/MD5-s1910520008--a84273f25e1d22162249a05df5c55c41

+ 17 - 0
Subject 24/sub-24_task-arrow_run-3.ds/sub-24_task-arrow_run-3.newds

@@ -0,0 +1,17 @@
+// 
+// These parameters will appear in the new dataset.
+// 
+NewDatasetFields
+{
+	site:	
+	system:	DSQ-2010
+	institute:	
+	protocol:	parkinsons.rp
+	purpose:	
+	keywords:	parkinson, Liz
+	coefsName:	/opt/ctf/hardware/M021/M021_2205.coef
+	sensName:	/opt/ctf/hardware/M021/M021_2205.sens
+	appName:	Acq patch3-4.17-linux-20040429
+	systemType:	cmeg
+	bandwidth:	0.000000, 300.000000
+}

BIN
Subject 24/sub-24_task-arrow_run-3.ds/sub-24_task-arrow_run-3.res4