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Nathaniel Glassy 5 months ago
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commit
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      Subject 04/sub-04_T1w.json
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      Subject 04/sub-04_T1w.nii
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Subject 04/sub-04_T1w.json

@@ -0,0 +1,65 @@
+{
+	"Modality": "MR",
+	"MagneticFieldStrength": 3,
+	"ImagingFrequency": 123.253,
+	"Manufacturer": "Siemens",
+	"ManufacturersModelName": "TrioTim",
+	"InstitutionName": "Neuroscience Imaging Center",
+	"InstitutionAddress": "Irving St 1,-D6CCEA- San Francisco,CA,US,94122",
+	"DeviceSerialNumber": "35229",
+	"StationName": "MRC35229",
+	"PatientPosition": "HFS",
+	"ProcedureStepDescription": "Nagarajan_Lab^temp",
+	"SoftwareVersions": "syngo MR B15",
+	"MRAcquisitionType": "3D",
+	"SeriesDescription": "t1_mprage",
+	"ProtocolName": "t1_mprage",
+	"ScanningSequence": "GR\\IR",
+	"SequenceVariant": "SP\\MP\\OSP",
+	"ScanOptions": "IR",
+	"SequenceName": "*tfl3d1_ns",
+	"ImageType": ["ORIGINAL", "PRIMARY", "M", "ND", "NORM"],
+	"SeriesNumber": 3,
+	"AcquisitionNumber": 1,
+	"SliceThickness": 1,
+	"SAR": 0.0950613,
+	"EchoTime": 0.00298,
+	"RepetitionTime": 2.3,
+	"InversionTime": 0.9,
+	"FlipAngle": 9,
+	"PartialFourier": 1,
+	"BaseResolution": 256,
+	"ShimSetting": [
+		8024,
+		-5664,
+		-2941,
+		120,
+		-169,
+		-325,
+		108,
+		-34	],
+	"TxRefAmp": 361.949,
+	"PhaseResolution": 0.96,
+	"ReceiveCoilName": "HeadMatrix",
+	"CoilString": "T:HEA;HEP",
+	"PulseSequenceDetails": "%SiemensSeq%\\tfl",
+	"RefLinesPE": 24,
+	"PercentPhaseFOV": 93.75,
+	"PercentSampling": 96,
+	"PhaseEncodingSteps": 230,
+	"AcquisitionMatrixPE": 230,
+	"ReconMatrixPE": 240,
+	"ParallelReductionFactorInPlane": 2,
+	"PixelBandwidth": 240,
+	"DwellTime": 8.2e-06,
+	"ImageOrientationPatientDICOM": [
+		0.0853076,
+		0.995069,
+		-0.0505929,
+		-0.00432152,
+		-0.050408,
+		-0.998719	],
+	"InPlanePhaseEncodingDirectionDICOM": "ROW",
+	"ConversionSoftware": "dcm2niix",
+	"ConversionSoftwareVersion": "v1.0.20210317"
+}

+ 1 - 0
Subject 04/sub-04_T1w.nii

@@ -0,0 +1 @@
+/annex/objects/MD5-s21627232--1480c428809a0ab325e22d072c7590b9

BIN
Subject 04/sub-04_task-arrow_run-1.ds/BadChannels


+ 26 - 0
Subject 04/sub-04_task-arrow_run-1.ds/ClassFile.cls

@@ -0,0 +1,26 @@
+PATH OF DATASET:
+/working/research_meg13/leighton/lizraw/raw/sub-04_task-arrow_run-1.ds
+
+
+NUMBER OF CLASSES:
+1
+
+
+CLASSGROUPID:
+3
+NAME:
+BAD
+COMMENT:
+
+COLOR:
+Red
+EDITABLE:
+Yes
+CLASSID:
+1
+NUMBER OF TRIALS:
+0
+LIST OF TRIALS:
+TRIAL NUMBER
+
+

File diff suppressed because it is too large
+ 1626 - 0
Subject 04/sub-04_task-arrow_run-1.ds/MarkerFile.mrk


BIN
Subject 04/sub-04_task-arrow_run-1.ds/bad.segments


+ 32 - 0
Subject 04/sub-04_task-arrow_run-1.ds/params.dsc

@@ -0,0 +1,32 @@
+
+// Head Localization parameters.
+// 29-Dec-2020 18:17
+
+CustomDs
+{
+	FixSensors:	False
+}
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+}
+
+// Data selector parameters.
+DsSelector
+{
+	RejectBadTrials:	FALSE
+	ForceEvenNumTargets:	FALSE
+	MaximumOverlap:	0
+	StartTime:	-0
+	EndTime:	5
+	EventRange:	ALL
+	WholeTrial:	TRUE
+	CondSearchStart:	0
+	CondSearchEnd:	0
+	TargetTrialOffset:	0
+}

+ 33 - 0
Subject 04/sub-04_task-arrow_run-1.ds/processing.cfg

@@ -0,0 +1,33 @@
+// Processing configuration.
+// 18:17  29/12/2020
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+	// lowpass: enable, filterOrder, fc
+	lowpass:	0,4,0.00000000000000000
+	// highpass: enable, filterOrder, fc
+	highpass:	0,4,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,4,0.00000000000000000,0.00000000000000000
+	// bandpass: enable, filterOrder, fc1, fc2
+	bandpass:	0,4,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// offset: enable, baselineSelection, startPt, endPt
+	// (baseline=0 --> use pretrigger data)
+	// (baseline=1 --> use from startPt to endPt)
+	// (baseline=2 --> use whole trial)
+	// (baseline+=10 --> do trend removal)
+	offset:	0,0,1,1
+}

+ 37 - 0
Subject 04/sub-04_task-arrow_run-1.ds/sub-04_task-arrow_run-1.hc

@@ -0,0 +1,37 @@
+standard nasion coil position relative to dewar (cm):
+	x = 5.65685
+	y = 5.65685
+	z = -27
+standard left ear coil position relative to dewar (cm):
+	x = -5.65685
+	y = 5.65685
+	z = -27
+standard right ear coil position relative to dewar (cm):
+	x = 5.65685
+	y = -5.65685
+	z = -27
+measured nasion coil position relative to dewar (cm):
+	x = 7.50819
+	y = 6.25384
+	z = -25.4226
+measured left ear coil position relative to dewar (cm):
+	x = -5.0503
+	y = 6.08685
+	z = -26.5145
+measured right ear coil position relative to dewar (cm):
+	x = 5.73052
+	y = -5.93724
+	z = -26.9191
+measured nasion coil position relative to head (cm):
+	x = 9.55179
+	y = -3.33067e-16
+	z = 3.55271e-15
+measured left ear coil position relative to head (cm):
+	x = -0.128612
+	y = 8.07623
+	z = -1.06581e-14
+measured right ear coil position relative to head (cm):
+	x = 0.128612
+	y = -8.07623
+	z = 1.06581e-14
+

BIN
Subject 04/sub-04_task-arrow_run-1.ds/sub-04_task-arrow_run-1.infods


+ 1 - 0
Subject 04/sub-04_task-arrow_run-1.ds/sub-04_task-arrow_run-1.meg4

@@ -0,0 +1 @@
+/annex/objects/MD5-s1932480008--9cc1a8fac6146930b2062fa1eba165e3

+ 17 - 0
Subject 04/sub-04_task-arrow_run-1.ds/sub-04_task-arrow_run-1.newds

@@ -0,0 +1,17 @@
+// 
+// These parameters will appear in the new dataset.
+// 
+NewDatasetFields
+{
+	site:	
+	system:	DSQ-2010
+	institute:	
+	protocol:	parkinsons.rp
+	purpose:	
+	keywords:	parkinson, Liz
+	coefsName:	/opt/ctf/hardware/M021/M021_2205.coef
+	sensName:	/opt/ctf/hardware/M021/M021_2205.sens
+	appName:	Acq patch3-4.17-linux-20040429
+	systemType:	cmeg
+	bandwidth:	0.000000, 300.000000
+}

BIN
Subject 04/sub-04_task-arrow_run-1.ds/sub-04_task-arrow_run-1.res4


BIN
Subject 04/sub-04_task-arrow_run-2.ds/BadChannels


+ 26 - 0
Subject 04/sub-04_task-arrow_run-2.ds/ClassFile.cls

@@ -0,0 +1,26 @@
+PATH OF DATASET:
+/working/research_meg13/leighton/lizraw/raw/sub-04_task-arrow_run-2.ds
+
+
+NUMBER OF CLASSES:
+1
+
+
+CLASSGROUPID:
+3
+NAME:
+BAD
+COMMENT:
+
+COLOR:
+Red
+EDITABLE:
+Yes
+CLASSID:
+1
+NUMBER OF TRIALS:
+0
+LIST OF TRIALS:
+TRIAL NUMBER
+
+

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+ 1625 - 0
Subject 04/sub-04_task-arrow_run-2.ds/MarkerFile.mrk


BIN
Subject 04/sub-04_task-arrow_run-2.ds/bad.segments


+ 32 - 0
Subject 04/sub-04_task-arrow_run-2.ds/params.dsc

@@ -0,0 +1,32 @@
+
+// Head Localization parameters.
+// 29-Dec-2020 18:18
+
+CustomDs
+{
+	FixSensors:	False
+}
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+}
+
+// Data selector parameters.
+DsSelector
+{
+	RejectBadTrials:	FALSE
+	ForceEvenNumTargets:	FALSE
+	MaximumOverlap:	0
+	StartTime:	-0
+	EndTime:	5
+	EventRange:	ALL
+	WholeTrial:	TRUE
+	CondSearchStart:	0
+	CondSearchEnd:	0
+	TargetTrialOffset:	0
+}

+ 33 - 0
Subject 04/sub-04_task-arrow_run-2.ds/processing.cfg

@@ -0,0 +1,33 @@
+// Processing configuration.
+// 18:18  29/12/2020
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+	// lowpass: enable, filterOrder, fc
+	lowpass:	0,4,0.00000000000000000
+	// highpass: enable, filterOrder, fc
+	highpass:	0,4,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,4,0.00000000000000000,0.00000000000000000
+	// bandpass: enable, filterOrder, fc1, fc2
+	bandpass:	0,4,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// offset: enable, baselineSelection, startPt, endPt
+	// (baseline=0 --> use pretrigger data)
+	// (baseline=1 --> use from startPt to endPt)
+	// (baseline=2 --> use whole trial)
+	// (baseline+=10 --> do trend removal)
+	offset:	0,0,1,1
+}

+ 37 - 0
Subject 04/sub-04_task-arrow_run-2.ds/sub-04_task-arrow_run-2.hc

@@ -0,0 +1,37 @@
+standard nasion coil position relative to dewar (cm):
+	x = 5.65685
+	y = 5.65685
+	z = -27
+standard left ear coil position relative to dewar (cm):
+	x = -5.65685
+	y = 5.65685
+	z = -27
+standard right ear coil position relative to dewar (cm):
+	x = 5.65685
+	y = -5.65685
+	z = -27
+measured nasion coil position relative to dewar (cm):
+	x = 7.46347
+	y = 6.29104
+	z = -25.2693
+measured left ear coil position relative to dewar (cm):
+	x = -5.11311
+	y = 6.07157
+	z = -26.4222
+measured right ear coil position relative to dewar (cm):
+	x = 5.7886
+	y = -5.89313
+	z = -26.7727
+measured nasion coil position relative to head (cm):
+	x = 9.53953
+	y = -3.33067e-16
+	z = 3.55271e-15
+measured left ear coil position relative to head (cm):
+	x = -0.157979
+	y = 8.09359
+	z = 1.42109e-14
+measured right ear coil position relative to head (cm):
+	x = 0.157979
+	y = -8.09359
+	z = -7.10543e-15
+

BIN
Subject 04/sub-04_task-arrow_run-2.ds/sub-04_task-arrow_run-2.infods


+ 1 - 0
Subject 04/sub-04_task-arrow_run-2.ds/sub-04_task-arrow_run-2.meg4

@@ -0,0 +1 @@
+/annex/objects/MD5-s1917840008--0ba1774f7bce462f9d8f885a6553ad44

+ 17 - 0
Subject 04/sub-04_task-arrow_run-2.ds/sub-04_task-arrow_run-2.newds

@@ -0,0 +1,17 @@
+// 
+// These parameters will appear in the new dataset.
+// 
+NewDatasetFields
+{
+	site:	
+	system:	DSQ-2010
+	institute:	
+	protocol:	parkinsons.rp
+	purpose:	
+	keywords:	parkinson, Liz
+	coefsName:	/opt/ctf/hardware/M021/M021_2205.coef
+	sensName:	/opt/ctf/hardware/M021/M021_2205.sens
+	appName:	Acq patch3-4.17-linux-20040429
+	systemType:	cmeg
+	bandwidth:	0.000000, 300.000000
+}

BIN
Subject 04/sub-04_task-arrow_run-2.ds/sub-04_task-arrow_run-2.res4


BIN
Subject 04/sub-04_task-arrow_run-3.ds/BadChannels


+ 26 - 0
Subject 04/sub-04_task-arrow_run-3.ds/ClassFile.cls

@@ -0,0 +1,26 @@
+PATH OF DATASET:
+/working/research_meg13/leighton/lizraw/raw/sub-04_task-arrow_run-3.ds
+
+
+NUMBER OF CLASSES:
+1
+
+
+CLASSGROUPID:
+3
+NAME:
+BAD
+COMMENT:
+
+COLOR:
+Red
+EDITABLE:
+Yes
+CLASSID:
+1
+NUMBER OF TRIALS:
+0
+LIST OF TRIALS:
+TRIAL NUMBER
+
+

File diff suppressed because it is too large
+ 1623 - 0
Subject 04/sub-04_task-arrow_run-3.ds/MarkerFile.mrk


BIN
Subject 04/sub-04_task-arrow_run-3.ds/bad.segments


+ 32 - 0
Subject 04/sub-04_task-arrow_run-3.ds/params.dsc

@@ -0,0 +1,32 @@
+
+// Head Localization parameters.
+// 29-Dec-2020 18:19
+
+CustomDs
+{
+	FixSensors:	False
+}
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+}
+
+// Data selector parameters.
+DsSelector
+{
+	RejectBadTrials:	FALSE
+	ForceEvenNumTargets:	FALSE
+	MaximumOverlap:	0
+	StartTime:	-0
+	EndTime:	5
+	EventRange:	ALL
+	WholeTrial:	TRUE
+	CondSearchStart:	0
+	CondSearchEnd:	0
+	TargetTrialOffset:	0
+}

+ 33 - 0
Subject 04/sub-04_task-arrow_run-3.ds/processing.cfg

@@ -0,0 +1,33 @@
+// Processing configuration.
+// 18:19  29/12/2020
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+	// lowpass: enable, filterOrder, fc
+	lowpass:	0,4,0.00000000000000000
+	// highpass: enable, filterOrder, fc
+	highpass:	0,4,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,4,0.00000000000000000,0.00000000000000000
+	// bandpass: enable, filterOrder, fc1, fc2
+	bandpass:	0,4,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// offset: enable, baselineSelection, startPt, endPt
+	// (baseline=0 --> use pretrigger data)
+	// (baseline=1 --> use from startPt to endPt)
+	// (baseline=2 --> use whole trial)
+	// (baseline+=10 --> do trend removal)
+	offset:	0,0,1,1
+}

+ 37 - 0
Subject 04/sub-04_task-arrow_run-3.ds/sub-04_task-arrow_run-3.hc

@@ -0,0 +1,37 @@
+standard nasion coil position relative to dewar (cm):
+	x = 5.65685
+	y = 5.65685
+	z = -27
+standard left ear coil position relative to dewar (cm):
+	x = -5.65685
+	y = 5.65685
+	z = -27
+standard right ear coil position relative to dewar (cm):
+	x = 5.65685
+	y = -5.65685
+	z = -27
+measured nasion coil position relative to dewar (cm):
+	x = 7.79159
+	y = 5.78723
+	z = -24.1716
+measured left ear coil position relative to dewar (cm):
+	x = -4.31393
+	y = 6.44924
+	z = -26.3259
+measured right ear coil position relative to dewar (cm):
+	x = 5.69488
+	y = -6.15608
+	z = -26.9991
+measured nasion coil position relative to head (cm):
+	x = 9.40464
+	y = -2.22045e-16
+	z = 0
+measured left ear coil position relative to head (cm):
+	x = 0.0906631
+	y = 8.05436
+	z = -1.77636e-14
+measured right ear coil position relative to head (cm):
+	x = -0.0906631
+	y = -8.05436
+	z = 1.77636e-14
+

BIN
Subject 04/sub-04_task-arrow_run-3.ds/sub-04_task-arrow_run-3.infods


+ 1 - 0
Subject 04/sub-04_task-arrow_run-3.ds/sub-04_task-arrow_run-3.meg4

@@ -0,0 +1 @@
+/annex/objects/MD5-s1925160008--183738d7df8d82ec45fcbc95dbe8b979

+ 17 - 0
Subject 04/sub-04_task-arrow_run-3.ds/sub-04_task-arrow_run-3.newds

@@ -0,0 +1,17 @@
+// 
+// These parameters will appear in the new dataset.
+// 
+NewDatasetFields
+{
+	site:	
+	system:	DSQ-2010
+	institute:	
+	protocol:	parkinsons.rp
+	purpose:	
+	keywords:	parkinson, Liz
+	coefsName:	/opt/ctf/hardware/M021/M021_2205.coef
+	sensName:	/opt/ctf/hardware/M021/M021_2205.sens
+	appName:	Acq patch3-4.17-linux-20040429
+	systemType:	cmeg
+	bandwidth:	0.000000, 300.000000
+}

BIN
Subject 04/sub-04_task-arrow_run-3.ds/sub-04_task-arrow_run-3.res4