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Nathaniel Glassy 5 months ago
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commit
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35 changed files with 5294 additions and 0 deletions
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      Subject 30/sub-30_T1w.json
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      Subject 30/sub-30_T1w.nii
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  20. 37 0
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  31. 37 0
      Subject 30/sub-30_task-arrow_run-03.ds/sub-30_task-arrow_run-03.hc
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+ 57 - 0
Subject 30/sub-30_T1w.json

@@ -0,0 +1,57 @@
+{
+	"Modality": "MR",
+	"MagneticFieldStrength": 1.5,
+	"ImagingFrequency": 63.8997,
+	"Manufacturer": "Philips",
+	"ManufacturersModelName": "Achieva",
+	"InstitutionName": "UCSF IMR",
+	"InstitutionalDepartmentName": "Radiology",
+	"DeviceSerialNumber": "08042",
+	"StationName": "MR4",
+	"BodyPartExamined": "OPTIC CANAL",
+	"PatientPosition": "HFS",
+	"ProcedureStepDescription": "MSI",
+	"SoftwareVersions": "2.6.3\\2.6.3.4",
+	"MRAcquisitionType": "3D",
+	"SeriesDescription": "MP-RAGE MSI",
+	"ProtocolName": "MP-RAGE MSI CLEAR",
+	"ScanningSequence": "GR",
+	"SequenceVariant": "MP",
+	"ScanOptions": "OTHER",
+	"ImageType": ["ORIGINAL", "PRIMARY", "M", "FFE", "M", "FFE"],
+	"SeriesNumber": 301,
+	"AcquisitionTime": "12:31:22.350000",
+	"AcquisitionNumber": 3,
+	"PhilipsRescaleSlope": 6.74799,
+	"PhilipsRescaleIntercept": 0,
+	"PhilipsScaleSlope": 0.000224425,
+	"UsePhilipsFloatNotDisplayScaling": 0,
+	"SliceThickness": 1.5,
+	"SpacingBetweenSlices": 1.5,
+	"SAR": 0.0919834,
+	"EchoTime": 0.003687,
+	"RepetitionTime": 0.0077032,
+	"FlipAngle": 8,
+	"CoilString": "SENSE-Head-6",
+	"PercentPhaseFOV": 75,
+	"PercentSampling": 100,
+	"EchoTrainLength": 192,
+	"PhaseEncodingSteps": 256,
+	"AcquisitionMatrixPE": 256,
+	"ReconMatrixPE": 256,
+	"WaterFatShift": 1.13461,
+	"EstimatedEffectiveEchoSpacing": 2.03739e-05,
+	"EstimatedTotalReadoutTime": 0.00519534,
+	"PixelBandwidth": 191,
+	"PhaseEncodingAxis": "i",
+	"ImageOrientationPatientDICOM": [
+		0.999448,
+		0,
+		0.0332338,
+		0,
+		1,
+		0	],
+	"InPlanePhaseEncodingDirectionDICOM": "ROW",
+	"ConversionSoftware": "dcm2niix",
+	"ConversionSoftwareVersion": "v1.0.20210317"
+}

+ 1 - 0
Subject 30/sub-30_T1w.nii

@@ -0,0 +1 @@
+/annex/objects/MD5-s18350432--a2e9ce49a623a368e13aff182e53dc61

BIN
Subject 30/sub-30_task-arrow_run-01.ds/BadChannels


+ 26 - 0
Subject 30/sub-30_task-arrow_run-01.ds/ClassFile.cls

@@ -0,0 +1,26 @@
+PATH OF DATASET:
+/data/research_meg13/leighton/lizraw/controls/sub-30_task-arrow_run-01.ds
+
+
+NUMBER OF CLASSES:
+1
+
+
+CLASSGROUPID:
+3
+NAME:
+BAD
+COMMENT:
+
+COLOR:
+Red
+EDITABLE:
+Yes
+CLASSID:
+1
+NUMBER OF TRIALS:
+0
+LIST OF TRIALS:
+TRIAL NUMBER
+
+

File diff suppressed because it is too large
+ 1582 - 0
Subject 30/sub-30_task-arrow_run-01.ds/MarkerFile.mrk


BIN
Subject 30/sub-30_task-arrow_run-01.ds/bad.segments


+ 32 - 0
Subject 30/sub-30_task-arrow_run-01.ds/params.dsc

@@ -0,0 +1,32 @@
+
+// Head Localization parameters.
+// 26-May-2021 10:19
+
+CustomDs
+{
+	FixSensors:	False
+}
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+}
+
+// Data selector parameters.
+DsSelector
+{
+	RejectBadTrials:	FALSE
+	ForceEvenNumTargets:	FALSE
+	MaximumOverlap:	0
+	StartTime:	-0
+	EndTime:	5
+	EventRange:	ALL
+	WholeTrial:	TRUE
+	CondSearchStart:	0
+	CondSearchEnd:	0
+	TargetTrialOffset:	0
+}

+ 33 - 0
Subject 30/sub-30_task-arrow_run-01.ds/processing.cfg

@@ -0,0 +1,33 @@
+// Processing configuration.
+// 10:19  26/05/2021
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+	// lowpass: enable, filterOrder, fc
+	lowpass:	0,4,0.00000000000000000
+	// highpass: enable, filterOrder, fc
+	highpass:	0,4,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,4,0.00000000000000000,0.00000000000000000
+	// bandpass: enable, filterOrder, fc1, fc2
+	bandpass:	0,4,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// offset: enable, baselineSelection, startPt, endPt
+	// (baseline=0 --> use pretrigger data)
+	// (baseline=1 --> use from startPt to endPt)
+	// (baseline=2 --> use whole trial)
+	// (baseline+=10 --> do trend removal)
+	offset:	0,0,1,1
+}

+ 37 - 0
Subject 30/sub-30_task-arrow_run-01.ds/sub-30_task-arrow_run-01.hc

@@ -0,0 +1,37 @@
+standard nasion coil position relative to dewar (cm):
+	x = 5.65685
+	y = 5.65685
+	z = -27
+standard left ear coil position relative to dewar (cm):
+	x = -5.65685
+	y = 5.65685
+	z = -27
+standard right ear coil position relative to dewar (cm):
+	x = 5.65685
+	y = -5.65685
+	z = -27
+measured nasion coil position relative to dewar (cm):
+	x = 6.59128
+	y = 6.21603
+	z = -25.3736
+measured left ear coil position relative to dewar (cm):
+	x = -5.12768
+	y = 5.51705
+	z = -27.0738
+measured right ear coil position relative to dewar (cm):
+	x = 4.96235
+	y = -5.17225
+	z = -27.3437
+measured nasion coil position relative to head (cm):
+	x = 9.18884
+	y = -1.16573e-15
+	z = 3.55271e-15
+measured left ear coil position relative to head (cm):
+	x = -0.122045
+	y = 7.34988
+	z = 7.10543e-15
+measured right ear coil position relative to head (cm):
+	x = 0.122045
+	y = -7.34988
+	z = -3.55271e-15
+

BIN
Subject 30/sub-30_task-arrow_run-01.ds/sub-30_task-arrow_run-01.infods


+ 1 - 0
Subject 30/sub-30_task-arrow_run-01.ds/sub-30_task-arrow_run-01.meg4

@@ -0,0 +1 @@
+/annex/objects/MD5-s1983720008--bcf69c54e498b1f7e11afdc99e22d669

+ 17 - 0
Subject 30/sub-30_task-arrow_run-01.ds/sub-30_task-arrow_run-01.newds

@@ -0,0 +1,17 @@
+// 
+// These parameters will appear in the new dataset.
+// 
+NewDatasetFields
+{
+	site:	
+	system:	DSQ-2010
+	institute:	
+	protocol:	parkinsons.rp
+	purpose:	
+	keywords:	parkinson, Liz
+	coefsName:	/opt/ctf/hardware/M021/M021_2205.coef
+	sensName:	/opt/ctf/hardware/M021/M021_2205.sens
+	appName:	Acq patch3-4.17-linux-20040429
+	systemType:	cmeg
+	bandwidth:	0.000000, 300.000000
+}

BIN
Subject 30/sub-30_task-arrow_run-01.ds/sub-30_task-arrow_run-01.res4


BIN
Subject 30/sub-30_task-arrow_run-02.ds/BadChannels


+ 26 - 0
Subject 30/sub-30_task-arrow_run-02.ds/ClassFile.cls

@@ -0,0 +1,26 @@
+PATH OF DATASET:
+/data/research_meg13/leighton/lizraw/controls/sub-30_task-arrow_run-02.ds
+
+
+NUMBER OF CLASSES:
+1
+
+
+CLASSGROUPID:
+3
+NAME:
+BAD
+COMMENT:
+
+COLOR:
+Red
+EDITABLE:
+Yes
+CLASSID:
+1
+NUMBER OF TRIALS:
+0
+LIST OF TRIALS:
+TRIAL NUMBER
+
+

File diff suppressed because it is too large
+ 1601 - 0
Subject 30/sub-30_task-arrow_run-02.ds/MarkerFile.mrk


BIN
Subject 30/sub-30_task-arrow_run-02.ds/bad.segments


+ 32 - 0
Subject 30/sub-30_task-arrow_run-02.ds/params.dsc

@@ -0,0 +1,32 @@
+
+// Head Localization parameters.
+// 26-May-2021 10:22
+
+CustomDs
+{
+	FixSensors:	False
+}
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+}
+
+// Data selector parameters.
+DsSelector
+{
+	RejectBadTrials:	FALSE
+	ForceEvenNumTargets:	FALSE
+	MaximumOverlap:	0
+	StartTime:	-0
+	EndTime:	5
+	EventRange:	ALL
+	WholeTrial:	TRUE
+	CondSearchStart:	0
+	CondSearchEnd:	0
+	TargetTrialOffset:	0
+}

+ 33 - 0
Subject 30/sub-30_task-arrow_run-02.ds/processing.cfg

@@ -0,0 +1,33 @@
+// Processing configuration.
+// 10:22  26/05/2021
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+	// lowpass: enable, filterOrder, fc
+	lowpass:	0,4,0.00000000000000000
+	// highpass: enable, filterOrder, fc
+	highpass:	0,4,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,4,0.00000000000000000,0.00000000000000000
+	// bandpass: enable, filterOrder, fc1, fc2
+	bandpass:	0,4,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// offset: enable, baselineSelection, startPt, endPt
+	// (baseline=0 --> use pretrigger data)
+	// (baseline=1 --> use from startPt to endPt)
+	// (baseline=2 --> use whole trial)
+	// (baseline+=10 --> do trend removal)
+	offset:	0,0,1,1
+}

+ 37 - 0
Subject 30/sub-30_task-arrow_run-02.ds/sub-30_task-arrow_run-02.hc

@@ -0,0 +1,37 @@
+standard nasion coil position relative to dewar (cm):
+	x = 5.65685
+	y = 5.65685
+	z = -27
+standard left ear coil position relative to dewar (cm):
+	x = -5.65685
+	y = 5.65685
+	z = -27
+standard right ear coil position relative to dewar (cm):
+	x = 5.65685
+	y = -5.65685
+	z = -27
+measured nasion coil position relative to dewar (cm):
+	x = 6.59074
+	y = 6.30076
+	z = -25.1091
+measured left ear coil position relative to dewar (cm):
+	x = -5.11267
+	y = 5.5544
+	z = -26.9881
+measured right ear coil position relative to dewar (cm):
+	x = 5.03899
+	y = -5.10535
+	z = -27.2667
+measured nasion coil position relative to head (cm):
+	x = 9.21515
+	y = 4.44089e-16
+	z = 0
+measured left ear coil position relative to head (cm):
+	x = -0.105672
+	y = 7.3607
+	z = 3.55271e-15
+measured right ear coil position relative to head (cm):
+	x = 0.105672
+	y = -7.3607
+	z = -1.06581e-14
+

BIN
Subject 30/sub-30_task-arrow_run-02.ds/sub-30_task-arrow_run-02.infods


+ 1 - 0
Subject 30/sub-30_task-arrow_run-02.ds/sub-30_task-arrow_run-02.meg4

@@ -0,0 +1 @@
+/annex/objects/MD5-s1932480008--ff6b96d2d3cbb5d0347d5ac73830141a

+ 17 - 0
Subject 30/sub-30_task-arrow_run-02.ds/sub-30_task-arrow_run-02.newds

@@ -0,0 +1,17 @@
+// 
+// These parameters will appear in the new dataset.
+// 
+NewDatasetFields
+{
+	site:	
+	system:	DSQ-2010
+	institute:	
+	protocol:	parkinsons.rp
+	purpose:	
+	keywords:	parkinson, Liz
+	coefsName:	/opt/ctf/hardware/M021/M021_2205.coef
+	sensName:	/opt/ctf/hardware/M021/M021_2205.sens
+	appName:	Acq patch3-4.17-linux-20040429
+	systemType:	cmeg
+	bandwidth:	0.000000, 300.000000
+}

BIN
Subject 30/sub-30_task-arrow_run-02.ds/sub-30_task-arrow_run-02.res4


BIN
Subject 30/sub-30_task-arrow_run-03.ds/BadChannels


+ 26 - 0
Subject 30/sub-30_task-arrow_run-03.ds/ClassFile.cls

@@ -0,0 +1,26 @@
+PATH OF DATASET:
+/data/research_meg13/leighton/lizraw/controls/sub-30_task-arrow_run-03.ds
+
+
+NUMBER OF CLASSES:
+1
+
+
+CLASSGROUPID:
+3
+NAME:
+BAD
+COMMENT:
+
+COLOR:
+Red
+EDITABLE:
+Yes
+CLASSID:
+1
+NUMBER OF TRIALS:
+0
+LIST OF TRIALS:
+TRIAL NUMBER
+
+

File diff suppressed because it is too large
+ 1615 - 0
Subject 30/sub-30_task-arrow_run-03.ds/MarkerFile.mrk


BIN
Subject 30/sub-30_task-arrow_run-03.ds/bad.segments


+ 32 - 0
Subject 30/sub-30_task-arrow_run-03.ds/params.dsc

@@ -0,0 +1,32 @@
+
+// Head Localization parameters.
+// 26-May-2021 10:23
+
+CustomDs
+{
+	FixSensors:	False
+}
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+}
+
+// Data selector parameters.
+DsSelector
+{
+	RejectBadTrials:	FALSE
+	ForceEvenNumTargets:	FALSE
+	MaximumOverlap:	0
+	StartTime:	-0
+	EndTime:	5
+	EventRange:	ALL
+	WholeTrial:	TRUE
+	CondSearchStart:	0
+	CondSearchEnd:	0
+	TargetTrialOffset:	0
+}

+ 33 - 0
Subject 30/sub-30_task-arrow_run-03.ds/processing.cfg

@@ -0,0 +1,33 @@
+// Processing configuration.
+// 10:23  26/05/2021
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+	// lowpass: enable, filterOrder, fc
+	lowpass:	0,4,0.00000000000000000
+	// highpass: enable, filterOrder, fc
+	highpass:	0,4,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,4,0.00000000000000000,0.00000000000000000
+	// bandpass: enable, filterOrder, fc1, fc2
+	bandpass:	0,4,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// offset: enable, baselineSelection, startPt, endPt
+	// (baseline=0 --> use pretrigger data)
+	// (baseline=1 --> use from startPt to endPt)
+	// (baseline=2 --> use whole trial)
+	// (baseline+=10 --> do trend removal)
+	offset:	0,0,1,1
+}

+ 37 - 0
Subject 30/sub-30_task-arrow_run-03.ds/sub-30_task-arrow_run-03.hc

@@ -0,0 +1,37 @@
+standard nasion coil position relative to dewar (cm):
+	x = 5.65685
+	y = 5.65685
+	z = -27
+standard left ear coil position relative to dewar (cm):
+	x = -5.65685
+	y = 5.65685
+	z = -27
+standard right ear coil position relative to dewar (cm):
+	x = 5.65685
+	y = -5.65685
+	z = -27
+measured nasion coil position relative to dewar (cm):
+	x = 6.50701
+	y = 6.38144
+	z = -25.2495
+measured left ear coil position relative to dewar (cm):
+	x = -5.1683
+	y = 5.56452
+	z = -27.1851
+measured right ear coil position relative to dewar (cm):
+	x = 5.07689
+	y = -5.04342
+	z = -27.5149
+measured nasion coil position relative to head (cm):
+	x = 9.20953
+	y = 4.996e-16
+	z = 0
+measured left ear coil position relative to head (cm):
+	x = -0.0820467
+	y = 7.37519
+	z = -1.42109e-14
+measured right ear coil position relative to head (cm):
+	x = 0.0820467
+	y = -7.37519
+	z = 7.10543e-15
+

BIN
Subject 30/sub-30_task-arrow_run-03.ds/sub-30_task-arrow_run-03.infods


+ 1 - 0
Subject 30/sub-30_task-arrow_run-03.ds/sub-30_task-arrow_run-03.meg4

@@ -0,0 +1 @@
+/annex/objects/MD5-s1947120008--cd1f6d93fed7528d570af0dbdb3d2e74

+ 17 - 0
Subject 30/sub-30_task-arrow_run-03.ds/sub-30_task-arrow_run-03.newds

@@ -0,0 +1,17 @@
+// 
+// These parameters will appear in the new dataset.
+// 
+NewDatasetFields
+{
+	site:	
+	system:	DSQ-2010
+	institute:	
+	protocol:	parkinsons.rp
+	purpose:	
+	keywords:	parkinson, Liz
+	coefsName:	/opt/ctf/hardware/M021/M021_2205.coef
+	sensName:	/opt/ctf/hardware/M021/M021_2205.sens
+	appName:	Acq patch3-4.17-linux-20040429
+	systemType:	cmeg
+	bandwidth:	0.000000, 300.000000
+}

BIN
Subject 30/sub-30_task-arrow_run-03.ds/sub-30_task-arrow_run-03.res4