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Nathaniel Glassy 5 months ago
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commit
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35 changed files with 5353 additions and 0 deletions
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+ 57 - 0
Subject 28/sub-28_T1w.json

@@ -0,0 +1,57 @@
+{
+	"Modality": "MR",
+	"MagneticFieldStrength": 1.5,
+	"ImagingFrequency": 63.8997,
+	"Manufacturer": "Philips",
+	"ManufacturersModelName": "Achieva",
+	"InstitutionName": "UCSF IMR",
+	"InstitutionalDepartmentName": "Radiology",
+	"DeviceSerialNumber": "08042",
+	"StationName": "MR4",
+	"BodyPartExamined": "OPTIC CANAL",
+	"PatientPosition": "HFS",
+	"ProcedureStepDescription": "MSI",
+	"SoftwareVersions": "2.6.3\\2.6.3.4",
+	"MRAcquisitionType": "3D",
+	"SeriesDescription": "MP-RAGE MSI",
+	"ProtocolName": "MP-RAGE MSI CLEAR",
+	"ScanningSequence": "GR",
+	"SequenceVariant": "MP",
+	"ScanOptions": "OTHER",
+	"ImageType": ["ORIGINAL", "PRIMARY", "M", "FFE", "M", "FFE"],
+	"SeriesNumber": 301,
+	"AcquisitionTime": "13:16:3.790000",
+	"AcquisitionNumber": 3,
+	"PhilipsRescaleSlope": 6.89255,
+	"PhilipsRescaleIntercept": 0,
+	"PhilipsScaleSlope": 0.000217263,
+	"UsePhilipsFloatNotDisplayScaling": 0,
+	"SliceThickness": 1.5,
+	"SpacingBetweenSlices": 1.5,
+	"SAR": 0.0919834,
+	"EchoTime": 0.00372,
+	"RepetitionTime": 0.0077246,
+	"FlipAngle": 8,
+	"CoilString": "SENSE-Head-6",
+	"PercentPhaseFOV": 75,
+	"PercentSampling": 100,
+	"EchoTrainLength": 192,
+	"PhaseEncodingSteps": 256,
+	"AcquisitionMatrixPE": 256,
+	"ReconMatrixPE": 256,
+	"WaterFatShift": 1.13461,
+	"EstimatedEffectiveEchoSpacing": 2.03739e-05,
+	"EstimatedTotalReadoutTime": 0.00519534,
+	"PixelBandwidth": 191,
+	"PhaseEncodingAxis": "i",
+	"ImageOrientationPatientDICOM": [
+		0.998497,
+		0.0546266,
+		0.00437248,
+		-0.0546261,
+		0.998507,
+		-0.000239211	],
+	"InPlanePhaseEncodingDirectionDICOM": "ROW",
+	"ConversionSoftware": "dcm2niix",
+	"ConversionSoftwareVersion": "v1.0.20210317"
+}

+ 1 - 0
Subject 28/sub-28_T1w.nii

@@ -0,0 +1 @@
+/annex/objects/MD5-s18350432--0b6e2a8042f781f0991d47a8cf4dc4f1

BIN
Subject 28/sub-28_task-arrow_run-1.ds/BadChannels


+ 26 - 0
Subject 28/sub-28_task-arrow_run-1.ds/ClassFile.cls

@@ -0,0 +1,26 @@
+PATH OF DATASET:
+/data/research_meg13/leighton/lizraw/controls/sub-28_task-arrow_run-1.ds
+
+
+NUMBER OF CLASSES:
+1
+
+
+CLASSGROUPID:
+3
+NAME:
+BAD
+COMMENT:
+
+COLOR:
+Red
+EDITABLE:
+Yes
+CLASSID:
+1
+NUMBER OF TRIALS:
+0
+LIST OF TRIALS:
+TRIAL NUMBER
+
+

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+ 1585 - 0
Subject 28/sub-28_task-arrow_run-1.ds/MarkerFile.mrk


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Subject 28/sub-28_task-arrow_run-1.ds/bad.segments


+ 32 - 0
Subject 28/sub-28_task-arrow_run-1.ds/params.dsc

@@ -0,0 +1,32 @@
+
+// Head Localization parameters.
+// 25-May-2021 09:58
+
+CustomDs
+{
+	FixSensors:	False
+}
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+}
+
+// Data selector parameters.
+DsSelector
+{
+	RejectBadTrials:	FALSE
+	ForceEvenNumTargets:	FALSE
+	MaximumOverlap:	0
+	StartTime:	-0
+	EndTime:	5
+	EventRange:	ALL
+	WholeTrial:	TRUE
+	CondSearchStart:	0
+	CondSearchEnd:	0
+	TargetTrialOffset:	0
+}

+ 33 - 0
Subject 28/sub-28_task-arrow_run-1.ds/processing.cfg

@@ -0,0 +1,33 @@
+// Processing configuration.
+// 09:58  25/05/2021
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+	// lowpass: enable, filterOrder, fc
+	lowpass:	0,4,0.00000000000000000
+	// highpass: enable, filterOrder, fc
+	highpass:	0,4,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,4,0.00000000000000000,0.00000000000000000
+	// bandpass: enable, filterOrder, fc1, fc2
+	bandpass:	0,4,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// offset: enable, baselineSelection, startPt, endPt
+	// (baseline=0 --> use pretrigger data)
+	// (baseline=1 --> use from startPt to endPt)
+	// (baseline=2 --> use whole trial)
+	// (baseline+=10 --> do trend removal)
+	offset:	0,0,1,1
+}

+ 37 - 0
Subject 28/sub-28_task-arrow_run-1.ds/sub-28_task-arrow_run-1.hc

@@ -0,0 +1,37 @@
+standard nasion coil position relative to dewar (cm):
+	x = 5.65685
+	y = 5.65685
+	z = -27
+standard left ear coil position relative to dewar (cm):
+	x = -5.65685
+	y = 5.65685
+	z = -27
+standard right ear coil position relative to dewar (cm):
+	x = 5.65685
+	y = -5.65685
+	z = -27
+measured nasion coil position relative to dewar (cm):
+	x = 7.53508
+	y = 7.14209
+	z = -26.1741
+measured left ear coil position relative to dewar (cm):
+	x = -5.30594
+	y = 5.81609
+	z = -28.1462
+measured right ear coil position relative to dewar (cm):
+	x = 5.54923
+	y = -5.76726
+	z = -27.852
+measured nasion coil position relative to head (cm):
+	x = 10.438
+	y = -2.22045e-16
+	z = 0
+measured left ear coil position relative to head (cm):
+	x = 0.0687658
+	y = 7.93846
+	z = 0
+measured right ear coil position relative to head (cm):
+	x = -0.0687658
+	y = -7.93846
+	z = -3.55271e-15
+

BIN
Subject 28/sub-28_task-arrow_run-1.ds/sub-28_task-arrow_run-1.infods


+ 1 - 0
Subject 28/sub-28_task-arrow_run-1.ds/sub-28_task-arrow_run-1.meg4

@@ -0,0 +1 @@
+/annex/objects/MD5-s1925160008--9213b9f796287a081ab4d9661426a9ef

+ 17 - 0
Subject 28/sub-28_task-arrow_run-1.ds/sub-28_task-arrow_run-1.newds

@@ -0,0 +1,17 @@
+// 
+// These parameters will appear in the new dataset.
+// 
+NewDatasetFields
+{
+	site:	
+	system:	DSQ-2010
+	institute:	
+	protocol:	parkinsons.rp
+	purpose:	
+	keywords:	parkinson, Liz
+	coefsName:	/opt/ctf/hardware/M021/M021_2205.coef
+	sensName:	/opt/ctf/hardware/M021/M021_2205.sens
+	appName:	Acq patch3-4.17-linux-20040429
+	systemType:	cmeg
+	bandwidth:	0.000000, 300.000000
+}

BIN
Subject 28/sub-28_task-arrow_run-1.ds/sub-28_task-arrow_run-1.res4


BIN
Subject 28/sub-28_task-arrow_run-2.ds/BadChannels


+ 26 - 0
Subject 28/sub-28_task-arrow_run-2.ds/ClassFile.cls

@@ -0,0 +1,26 @@
+PATH OF DATASET:
+/data/research_meg13/leighton/lizraw/controls/sub-28_task-arrow_run-2.ds
+
+
+NUMBER OF CLASSES:
+1
+
+
+CLASSGROUPID:
+3
+NAME:
+BAD
+COMMENT:
+
+COLOR:
+Red
+EDITABLE:
+Yes
+CLASSID:
+1
+NUMBER OF TRIALS:
+0
+LIST OF TRIALS:
+TRIAL NUMBER
+
+

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+ 1656 - 0
Subject 28/sub-28_task-arrow_run-2.ds/MarkerFile.mrk


BIN
Subject 28/sub-28_task-arrow_run-2.ds/bad.segments


+ 32 - 0
Subject 28/sub-28_task-arrow_run-2.ds/params.dsc

@@ -0,0 +1,32 @@
+
+// Head Localization parameters.
+// 25-May-2021 10:00
+
+CustomDs
+{
+	FixSensors:	False
+}
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+}
+
+// Data selector parameters.
+DsSelector
+{
+	RejectBadTrials:	FALSE
+	ForceEvenNumTargets:	FALSE
+	MaximumOverlap:	0
+	StartTime:	-0
+	EndTime:	5
+	EventRange:	ALL
+	WholeTrial:	TRUE
+	CondSearchStart:	0
+	CondSearchEnd:	0
+	TargetTrialOffset:	0
+}

+ 33 - 0
Subject 28/sub-28_task-arrow_run-2.ds/processing.cfg

@@ -0,0 +1,33 @@
+// Processing configuration.
+// 10:00  25/05/2021
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+	// lowpass: enable, filterOrder, fc
+	lowpass:	0,4,0.00000000000000000
+	// highpass: enable, filterOrder, fc
+	highpass:	0,4,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,4,0.00000000000000000,0.00000000000000000
+	// bandpass: enable, filterOrder, fc1, fc2
+	bandpass:	0,4,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// offset: enable, baselineSelection, startPt, endPt
+	// (baseline=0 --> use pretrigger data)
+	// (baseline=1 --> use from startPt to endPt)
+	// (baseline=2 --> use whole trial)
+	// (baseline+=10 --> do trend removal)
+	offset:	0,0,1,1
+}

+ 37 - 0
Subject 28/sub-28_task-arrow_run-2.ds/sub-28_task-arrow_run-2.hc

@@ -0,0 +1,37 @@
+standard nasion coil position relative to dewar (cm):
+	x = 5.65685
+	y = 5.65685
+	z = -27
+standard left ear coil position relative to dewar (cm):
+	x = -5.65685
+	y = 5.65685
+	z = -27
+standard right ear coil position relative to dewar (cm):
+	x = 5.65685
+	y = -5.65685
+	z = -27
+measured nasion coil position relative to dewar (cm):
+	x = 7.45288
+	y = 6.98955
+	z = -26.7499
+measured left ear coil position relative to dewar (cm):
+	x = -5.45222
+	y = 5.74772
+	z = -28.3745
+measured right ear coil position relative to dewar (cm):
+	x = 5.40771
+	y = -6.0284
+	z = -28.0125
+measured nasion coil position relative to head (cm):
+	x = 10.4306
+	y = 3.33067e-16
+	z = 0
+measured left ear coil position relative to head (cm):
+	x = 0.108353
+	y = 8.01092
+	z = 3.55271e-15
+measured right ear coil position relative to head (cm):
+	x = -0.108353
+	y = -8.01092
+	z = -3.55271e-15
+

BIN
Subject 28/sub-28_task-arrow_run-2.ds/sub-28_task-arrow_run-2.infods


+ 1 - 0
Subject 28/sub-28_task-arrow_run-2.ds/sub-28_task-arrow_run-2.meg4

@@ -0,0 +1 @@
+/annex/objects/MD5-s1947120008--beaf870c362699c5b238eae6424411a7

+ 17 - 0
Subject 28/sub-28_task-arrow_run-2.ds/sub-28_task-arrow_run-2.newds

@@ -0,0 +1,17 @@
+// 
+// These parameters will appear in the new dataset.
+// 
+NewDatasetFields
+{
+	site:	
+	system:	DSQ-2010
+	institute:	
+	protocol:	parkinsons.rp
+	purpose:	
+	keywords:	parkinson, Liz
+	coefsName:	/opt/ctf/hardware/M021/M021_2205.coef
+	sensName:	/opt/ctf/hardware/M021/M021_2205.sens
+	appName:	Acq patch3-4.17-linux-20040429
+	systemType:	cmeg
+	bandwidth:	0.000000, 300.000000
+}

BIN
Subject 28/sub-28_task-arrow_run-2.ds/sub-28_task-arrow_run-2.res4


BIN
Subject 28/sub-28_task-arrow_run-3.ds/BadChannels


+ 26 - 0
Subject 28/sub-28_task-arrow_run-3.ds/ClassFile.cls

@@ -0,0 +1,26 @@
+PATH OF DATASET:
+/data/research_meg13/leighton/lizraw/controls/sub-28_task-arrow_run-3.ds
+
+
+NUMBER OF CLASSES:
+1
+
+
+CLASSGROUPID:
+3
+NAME:
+BAD
+COMMENT:
+
+COLOR:
+Red
+EDITABLE:
+Yes
+CLASSID:
+1
+NUMBER OF TRIALS:
+0
+LIST OF TRIALS:
+TRIAL NUMBER
+
+

File diff suppressed because it is too large
+ 1616 - 0
Subject 28/sub-28_task-arrow_run-3.ds/MarkerFile.mrk


BIN
Subject 28/sub-28_task-arrow_run-3.ds/bad.segments


+ 32 - 0
Subject 28/sub-28_task-arrow_run-3.ds/params.dsc

@@ -0,0 +1,32 @@
+
+// Head Localization parameters.
+// 25-May-2021 10:01
+
+CustomDs
+{
+	FixSensors:	False
+}
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+}
+
+// Data selector parameters.
+DsSelector
+{
+	RejectBadTrials:	FALSE
+	ForceEvenNumTargets:	FALSE
+	MaximumOverlap:	0
+	StartTime:	-0
+	EndTime:	5
+	EventRange:	ALL
+	WholeTrial:	TRUE
+	CondSearchStart:	0
+	CondSearchEnd:	0
+	TargetTrialOffset:	0
+}

+ 33 - 0
Subject 28/sub-28_task-arrow_run-3.ds/processing.cfg

@@ -0,0 +1,33 @@
+// Processing configuration.
+// 10:01  25/05/2021
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+	// lowpass: enable, filterOrder, fc
+	lowpass:	0,4,0.00000000000000000
+	// highpass: enable, filterOrder, fc
+	highpass:	0,4,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,4,0.00000000000000000,0.00000000000000000
+	// bandpass: enable, filterOrder, fc1, fc2
+	bandpass:	0,4,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// offset: enable, baselineSelection, startPt, endPt
+	// (baseline=0 --> use pretrigger data)
+	// (baseline=1 --> use from startPt to endPt)
+	// (baseline=2 --> use whole trial)
+	// (baseline+=10 --> do trend removal)
+	offset:	0,0,1,1
+}

+ 37 - 0
Subject 28/sub-28_task-arrow_run-3.ds/sub-28_task-arrow_run-3.hc

@@ -0,0 +1,37 @@
+standard nasion coil position relative to dewar (cm):
+	x = 5.65685
+	y = 5.65685
+	z = -27
+standard left ear coil position relative to dewar (cm):
+	x = -5.65685
+	y = 5.65685
+	z = -27
+standard right ear coil position relative to dewar (cm):
+	x = 5.65685
+	y = -5.65685
+	z = -27
+measured nasion coil position relative to dewar (cm):
+	x = 7.38886
+	y = 6.97308
+	z = -27.0742
+measured left ear coil position relative to dewar (cm):
+	x = -5.50576
+	y = 5.74212
+	z = -28.5276
+measured right ear coil position relative to dewar (cm):
+	x = 5.35175
+	y = -6.1067
+	z = -28.2538
+measured nasion coil position relative to head (cm):
+	x = 10.4246
+	y = 4.996e-16
+	z = 0
+measured left ear coil position relative to head (cm):
+	x = 0.161238
+	y = 8.0351
+	z = 0
+measured right ear coil position relative to head (cm):
+	x = -0.161238
+	y = -8.0351
+	z = 3.55271e-15
+

BIN
Subject 28/sub-28_task-arrow_run-3.ds/sub-28_task-arrow_run-3.infods


+ 1 - 0
Subject 28/sub-28_task-arrow_run-3.ds/sub-28_task-arrow_run-3.meg4

@@ -0,0 +1 @@
+/annex/objects/MD5-s1925160008--e0461ca0b4cf91186e7f57ef119574f5

+ 17 - 0
Subject 28/sub-28_task-arrow_run-3.ds/sub-28_task-arrow_run-3.newds

@@ -0,0 +1,17 @@
+// 
+// These parameters will appear in the new dataset.
+// 
+NewDatasetFields
+{
+	site:	
+	system:	DSQ-2010
+	institute:	
+	protocol:	parkinsons.rp
+	purpose:	
+	keywords:	parkinson, Liz
+	coefsName:	/opt/ctf/hardware/M021/M021_2205.coef
+	sensName:	/opt/ctf/hardware/M021/M021_2205.sens
+	appName:	Acq patch3-4.17-linux-20040429
+	systemType:	cmeg
+	bandwidth:	0.000000, 300.000000
+}

BIN
Subject 28/sub-28_task-arrow_run-3.ds/sub-28_task-arrow_run-3.res4