Browse Source

Upload files to ''

Nathaniel Glassy 5 months ago
parent
commit
4cb5442ae5
35 changed files with 5413 additions and 0 deletions
  1. 65 0
      Subject 19/sub-19_T1w.json
  2. 1 0
      Subject 19/sub-19_T1w.nii
  3. BIN
      Subject 19/sub-19_task-arrow_run-1.ds/BadChannels
  4. 26 0
      Subject 19/sub-19_task-arrow_run-1.ds/ClassFile.cls
  5. 1588 0
      Subject 19/sub-19_task-arrow_run-1.ds/MarkerFile.mrk
  6. BIN
      Subject 19/sub-19_task-arrow_run-1.ds/bad.segments
  7. 32 0
      Subject 19/sub-19_task-arrow_run-1.ds/params.dsc
  8. 33 0
      Subject 19/sub-19_task-arrow_run-1.ds/processing.cfg
  9. 37 0
      Subject 19/sub-19_task-arrow_run-1.ds/sub-19_task-arrow_run-1.hc
  10. BIN
      Subject 19/sub-19_task-arrow_run-1.ds/sub-19_task-arrow_run-1.infods
  11. 1 0
      Subject 19/sub-19_task-arrow_run-1.ds/sub-19_task-arrow_run-1.meg4
  12. 17 0
      Subject 19/sub-19_task-arrow_run-1.ds/sub-19_task-arrow_run-1.newds
  13. BIN
      Subject 19/sub-19_task-arrow_run-1.ds/sub-19_task-arrow_run-1.res4
  14. BIN
      Subject 19/sub-19_task-arrow_run-2.ds/BadChannels
  15. 26 0
      Subject 19/sub-19_task-arrow_run-2.ds/ClassFile.cls
  16. 1661 0
      Subject 19/sub-19_task-arrow_run-2.ds/MarkerFile.mrk
  17. BIN
      Subject 19/sub-19_task-arrow_run-2.ds/bad.segments
  18. 32 0
      Subject 19/sub-19_task-arrow_run-2.ds/params.dsc
  19. 33 0
      Subject 19/sub-19_task-arrow_run-2.ds/processing.cfg
  20. 37 0
      Subject 19/sub-19_task-arrow_run-2.ds/sub-19_task-arrow_run-2.hc
  21. BIN
      Subject 19/sub-19_task-arrow_run-2.ds/sub-19_task-arrow_run-2.infods
  22. 1 0
      Subject 19/sub-19_task-arrow_run-2.ds/sub-19_task-arrow_run-2.meg4
  23. 17 0
      Subject 19/sub-19_task-arrow_run-2.ds/sub-19_task-arrow_run-2.newds
  24. BIN
      Subject 19/sub-19_task-arrow_run-2.ds/sub-19_task-arrow_run-2.res4
  25. BIN
      Subject 19/sub-19_task-arrow_run-3.ds/BadChannels
  26. 26 0
      Subject 19/sub-19_task-arrow_run-3.ds/ClassFile.cls
  27. 1660 0
      Subject 19/sub-19_task-arrow_run-3.ds/MarkerFile.mrk
  28. BIN
      Subject 19/sub-19_task-arrow_run-3.ds/bad.segments
  29. 32 0
      Subject 19/sub-19_task-arrow_run-3.ds/params.dsc
  30. 33 0
      Subject 19/sub-19_task-arrow_run-3.ds/processing.cfg
  31. 37 0
      Subject 19/sub-19_task-arrow_run-3.ds/sub-19_task-arrow_run-3.hc
  32. BIN
      Subject 19/sub-19_task-arrow_run-3.ds/sub-19_task-arrow_run-3.infods
  33. 1 0
      Subject 19/sub-19_task-arrow_run-3.ds/sub-19_task-arrow_run-3.meg4
  34. 17 0
      Subject 19/sub-19_task-arrow_run-3.ds/sub-19_task-arrow_run-3.newds
  35. BIN
      Subject 19/sub-19_task-arrow_run-3.ds/sub-19_task-arrow_run-3.res4

+ 65 - 0
Subject 19/sub-19_T1w.json

@@ -0,0 +1,65 @@
+{
+	"Modality": "MR",
+	"MagneticFieldStrength": 3,
+	"ImagingFrequency": 123.255,
+	"Manufacturer": "Siemens",
+	"ManufacturersModelName": "TrioTim",
+	"InstitutionName": "Neuroscience Imaging Center",
+	"InstitutionAddress": "Irving St 1,-B73CEA- San Francisco,CA,US,94122",
+	"DeviceSerialNumber": "35229",
+	"StationName": "MRC35229",
+	"PatientPosition": "HFS",
+	"ProcedureStepDescription": "Nagarajan_Lab^temp",
+	"SoftwareVersions": "syngo MR B15",
+	"MRAcquisitionType": "3D",
+	"SeriesDescription": "t1_mprage",
+	"ProtocolName": "t1_mprage",
+	"ScanningSequence": "GR\\IR",
+	"SequenceVariant": "SP\\MP\\OSP",
+	"ScanOptions": "IR",
+	"SequenceName": "*tfl3d1_ns",
+	"ImageType": ["ORIGINAL", "PRIMARY", "M", "ND", "NORM"],
+	"SeriesNumber": 3,
+	"AcquisitionNumber": 1,
+	"SliceThickness": 1,
+	"SAR": 0.0958711,
+	"EchoTime": 0.00298,
+	"RepetitionTime": 2.3,
+	"InversionTime": 0.9,
+	"FlipAngle": 9,
+	"PartialFourier": 1,
+	"BaseResolution": 256,
+	"ShimSetting": [
+		7996,
+		-5640,
+		-2948,
+		276,
+		50,
+		-221,
+		58,
+		9	],
+	"TxRefAmp": 378.636,
+	"PhaseResolution": 0.96,
+	"ReceiveCoilName": "HeadMatrix",
+	"CoilString": "T:HEA;HEP",
+	"PulseSequenceDetails": "%SiemensSeq%\\tfl",
+	"RefLinesPE": 24,
+	"PercentPhaseFOV": 93.75,
+	"PercentSampling": 96,
+	"PhaseEncodingSteps": 230,
+	"AcquisitionMatrixPE": 230,
+	"ReconMatrixPE": 240,
+	"ParallelReductionFactorInPlane": 2,
+	"PixelBandwidth": 240,
+	"DwellTime": 8.2e-06,
+	"ImageOrientationPatientDICOM": [
+		-0.0173933,
+		0.995113,
+		-0.0971966,
+		-0.0876083,
+		-0.0983542,
+		-0.991288	],
+	"InPlanePhaseEncodingDirectionDICOM": "ROW",
+	"ConversionSoftware": "dcm2niix",
+	"ConversionSoftwareVersion": "v1.0.20210317"
+}

+ 1 - 0
Subject 19/sub-19_T1w.nii

@@ -0,0 +1 @@
+/annex/objects/MD5-s19661152--10ee7678f396e85c56b009e3afa5675b

BIN
Subject 19/sub-19_task-arrow_run-1.ds/BadChannels


+ 26 - 0
Subject 19/sub-19_task-arrow_run-1.ds/ClassFile.cls

@@ -0,0 +1,26 @@
+PATH OF DATASET:
+/data/research_meg13/leighton/lizraw/controls/sub-19/sub-19_task-arrow_run-1.ds
+
+
+NUMBER OF CLASSES:
+1
+
+
+CLASSGROUPID:
+3
+NAME:
+BAD
+COMMENT:
+
+COLOR:
+Red
+EDITABLE:
+Yes
+CLASSID:
+1
+NUMBER OF TRIALS:
+0
+LIST OF TRIALS:
+TRIAL NUMBER
+
+

File diff suppressed because it is too large
+ 1588 - 0
Subject 19/sub-19_task-arrow_run-1.ds/MarkerFile.mrk


BIN
Subject 19/sub-19_task-arrow_run-1.ds/bad.segments


+ 32 - 0
Subject 19/sub-19_task-arrow_run-1.ds/params.dsc

@@ -0,0 +1,32 @@
+
+// Head Localization parameters.
+// 21-May-2021 16:27
+
+CustomDs
+{
+	FixSensors:	False
+}
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+}
+
+// Data selector parameters.
+DsSelector
+{
+	RejectBadTrials:	FALSE
+	ForceEvenNumTargets:	FALSE
+	MaximumOverlap:	0
+	StartTime:	-0
+	EndTime:	5
+	EventRange:	ALL
+	WholeTrial:	TRUE
+	CondSearchStart:	0
+	CondSearchEnd:	0
+	TargetTrialOffset:	0
+}

+ 33 - 0
Subject 19/sub-19_task-arrow_run-1.ds/processing.cfg

@@ -0,0 +1,33 @@
+// Processing configuration.
+// 16:27  21/05/2021
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+	// lowpass: enable, filterOrder, fc
+	lowpass:	0,4,0.00000000000000000
+	// highpass: enable, filterOrder, fc
+	highpass:	0,4,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,4,0.00000000000000000,0.00000000000000000
+	// bandpass: enable, filterOrder, fc1, fc2
+	bandpass:	0,4,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// offset: enable, baselineSelection, startPt, endPt
+	// (baseline=0 --> use pretrigger data)
+	// (baseline=1 --> use from startPt to endPt)
+	// (baseline=2 --> use whole trial)
+	// (baseline+=10 --> do trend removal)
+	offset:	0,0,1,1
+}

+ 37 - 0
Subject 19/sub-19_task-arrow_run-1.ds/sub-19_task-arrow_run-1.hc

@@ -0,0 +1,37 @@
+standard nasion coil position relative to dewar (cm):
+	x = 5.65685
+	y = 5.65685
+	z = -27
+standard left ear coil position relative to dewar (cm):
+	x = -5.65685
+	y = 5.65685
+	z = -27
+standard right ear coil position relative to dewar (cm):
+	x = 5.65685
+	y = -5.65685
+	z = -27
+measured nasion coil position relative to dewar (cm):
+	x = 7.71786
+	y = 7.31777
+	z = -26.7473
+measured left ear coil position relative to dewar (cm):
+	x = -5.13627
+	y = 5.64797
+	z = -30.0585
+measured right ear coil position relative to dewar (cm):
+	x = 6.38622
+	y = -5.3854
+	z = -29.2868
+measured nasion coil position relative to head (cm):
+	x = 10.5125
+	y = 1.55431e-15
+	z = 0
+measured left ear coil position relative to head (cm):
+	x = -0.223253
+	y = 7.98278
+	z = -3.55271e-15
+measured right ear coil position relative to head (cm):
+	x = 0.223253
+	y = -7.98278
+	z = 7.10543e-15
+

BIN
Subject 19/sub-19_task-arrow_run-1.ds/sub-19_task-arrow_run-1.infods


+ 1 - 0
Subject 19/sub-19_task-arrow_run-1.ds/sub-19_task-arrow_run-1.meg4

@@ -0,0 +1 @@
+/annex/objects/MD5-s1910520008--9889c930acf46f5d7b6c29a40dd9542f

+ 17 - 0
Subject 19/sub-19_task-arrow_run-1.ds/sub-19_task-arrow_run-1.newds

@@ -0,0 +1,17 @@
+// 
+// These parameters will appear in the new dataset.
+// 
+NewDatasetFields
+{
+	site:	
+	system:	DSQ-2010
+	institute:	
+	protocol:	parkinsons.rp
+	purpose:	
+	keywords:	parkinson, Liz
+	coefsName:	/opt/ctf/hardware/M021/M021_2205.coef
+	sensName:	/opt/ctf/hardware/M021/M021_2205.sens
+	appName:	Acq patch3-4.17-linux-20040429
+	systemType:	cmeg
+	bandwidth:	0.000000, 300.000000
+}

BIN
Subject 19/sub-19_task-arrow_run-1.ds/sub-19_task-arrow_run-1.res4


BIN
Subject 19/sub-19_task-arrow_run-2.ds/BadChannels


+ 26 - 0
Subject 19/sub-19_task-arrow_run-2.ds/ClassFile.cls

@@ -0,0 +1,26 @@
+PATH OF DATASET:
+/data/research_meg13/leighton/lizraw/controls/sub-19/sub-19_task-arrow_run-2.ds
+
+
+NUMBER OF CLASSES:
+1
+
+
+CLASSGROUPID:
+3
+NAME:
+BAD
+COMMENT:
+
+COLOR:
+Red
+EDITABLE:
+Yes
+CLASSID:
+1
+NUMBER OF TRIALS:
+0
+LIST OF TRIALS:
+TRIAL NUMBER
+
+

File diff suppressed because it is too large
+ 1661 - 0
Subject 19/sub-19_task-arrow_run-2.ds/MarkerFile.mrk


BIN
Subject 19/sub-19_task-arrow_run-2.ds/bad.segments


+ 32 - 0
Subject 19/sub-19_task-arrow_run-2.ds/params.dsc

@@ -0,0 +1,32 @@
+
+// Head Localization parameters.
+// 21-May-2021 16:28
+
+CustomDs
+{
+	FixSensors:	False
+}
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+}
+
+// Data selector parameters.
+DsSelector
+{
+	RejectBadTrials:	FALSE
+	ForceEvenNumTargets:	FALSE
+	MaximumOverlap:	0
+	StartTime:	-0
+	EndTime:	5
+	EventRange:	ALL
+	WholeTrial:	TRUE
+	CondSearchStart:	0
+	CondSearchEnd:	0
+	TargetTrialOffset:	0
+}

+ 33 - 0
Subject 19/sub-19_task-arrow_run-2.ds/processing.cfg

@@ -0,0 +1,33 @@
+// Processing configuration.
+// 16:28  21/05/2021
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+	// lowpass: enable, filterOrder, fc
+	lowpass:	0,4,0.00000000000000000
+	// highpass: enable, filterOrder, fc
+	highpass:	0,4,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,4,0.00000000000000000,0.00000000000000000
+	// bandpass: enable, filterOrder, fc1, fc2
+	bandpass:	0,4,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// offset: enable, baselineSelection, startPt, endPt
+	// (baseline=0 --> use pretrigger data)
+	// (baseline=1 --> use from startPt to endPt)
+	// (baseline=2 --> use whole trial)
+	// (baseline+=10 --> do trend removal)
+	offset:	0,0,1,1
+}

+ 37 - 0
Subject 19/sub-19_task-arrow_run-2.ds/sub-19_task-arrow_run-2.hc

@@ -0,0 +1,37 @@
+standard nasion coil position relative to dewar (cm):
+	x = 5.65685
+	y = 5.65685
+	z = -27
+standard left ear coil position relative to dewar (cm):
+	x = -5.65685
+	y = 5.65685
+	z = -27
+standard right ear coil position relative to dewar (cm):
+	x = 5.65685
+	y = -5.65685
+	z = -27
+measured nasion coil position relative to dewar (cm):
+	x = 7.74513
+	y = 7.27996
+	z = -26.7601
+measured left ear coil position relative to dewar (cm):
+	x = -5.17418
+	y = 5.66031
+	z = -30.0165
+measured right ear coil position relative to dewar (cm):
+	x = 6.3583
+	y = -5.46755
+	z = -29.2557
+measured nasion coil position relative to head (cm):
+	x = 10.5376
+	y = 8.88178e-16
+	z = -3.55271e-15
+measured left ear coil position relative to head (cm):
+	x = -0.225044
+	y = 8.01879
+	z = 2.13163e-14
+measured right ear coil position relative to head (cm):
+	x = 0.225044
+	y = -8.01879
+	z = -2.13163e-14
+

BIN
Subject 19/sub-19_task-arrow_run-2.ds/sub-19_task-arrow_run-2.infods


+ 1 - 0
Subject 19/sub-19_task-arrow_run-2.ds/sub-19_task-arrow_run-2.meg4

@@ -0,0 +1 @@
+/annex/objects/MD5-s1932480008--034e8196ea40209e8e89c3639a4d0db8

+ 17 - 0
Subject 19/sub-19_task-arrow_run-2.ds/sub-19_task-arrow_run-2.newds

@@ -0,0 +1,17 @@
+// 
+// These parameters will appear in the new dataset.
+// 
+NewDatasetFields
+{
+	site:	
+	system:	DSQ-2010
+	institute:	
+	protocol:	parkinsons.rp
+	purpose:	
+	keywords:	parkinson, Liz
+	coefsName:	/opt/ctf/hardware/M021/M021_2205.coef
+	sensName:	/opt/ctf/hardware/M021/M021_2205.sens
+	appName:	Acq patch3-4.17-linux-20040429
+	systemType:	cmeg
+	bandwidth:	0.000000, 300.000000
+}

BIN
Subject 19/sub-19_task-arrow_run-2.ds/sub-19_task-arrow_run-2.res4


BIN
Subject 19/sub-19_task-arrow_run-3.ds/BadChannels


+ 26 - 0
Subject 19/sub-19_task-arrow_run-3.ds/ClassFile.cls

@@ -0,0 +1,26 @@
+PATH OF DATASET:
+/data/research_meg13/leighton/lizraw/controls/sub-19/sub-19_task-arrow_run-3.ds
+
+
+NUMBER OF CLASSES:
+1
+
+
+CLASSGROUPID:
+3
+NAME:
+BAD
+COMMENT:
+
+COLOR:
+Red
+EDITABLE:
+Yes
+CLASSID:
+1
+NUMBER OF TRIALS:
+0
+LIST OF TRIALS:
+TRIAL NUMBER
+
+

File diff suppressed because it is too large
+ 1660 - 0
Subject 19/sub-19_task-arrow_run-3.ds/MarkerFile.mrk


BIN
Subject 19/sub-19_task-arrow_run-3.ds/bad.segments


+ 32 - 0
Subject 19/sub-19_task-arrow_run-3.ds/params.dsc

@@ -0,0 +1,32 @@
+
+// Head Localization parameters.
+// 21-May-2021 16:30
+
+CustomDs
+{
+	FixSensors:	False
+}
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+}
+
+// Data selector parameters.
+DsSelector
+{
+	RejectBadTrials:	FALSE
+	ForceEvenNumTargets:	FALSE
+	MaximumOverlap:	0
+	StartTime:	-0
+	EndTime:	5
+	EventRange:	ALL
+	WholeTrial:	TRUE
+	CondSearchStart:	0
+	CondSearchEnd:	0
+	TargetTrialOffset:	0
+}

+ 33 - 0
Subject 19/sub-19_task-arrow_run-3.ds/processing.cfg

@@ -0,0 +1,33 @@
+// Processing configuration.
+// 16:30  21/05/2021
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+	// lowpass: enable, filterOrder, fc
+	lowpass:	0,4,0.00000000000000000
+	// highpass: enable, filterOrder, fc
+	highpass:	0,4,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,4,0.00000000000000000,0.00000000000000000
+	// bandpass: enable, filterOrder, fc1, fc2
+	bandpass:	0,4,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// offset: enable, baselineSelection, startPt, endPt
+	// (baseline=0 --> use pretrigger data)
+	// (baseline=1 --> use from startPt to endPt)
+	// (baseline=2 --> use whole trial)
+	// (baseline+=10 --> do trend removal)
+	offset:	0,0,1,1
+}

+ 37 - 0
Subject 19/sub-19_task-arrow_run-3.ds/sub-19_task-arrow_run-3.hc

@@ -0,0 +1,37 @@
+standard nasion coil position relative to dewar (cm):
+	x = 5.65685
+	y = 5.65685
+	z = -27
+standard left ear coil position relative to dewar (cm):
+	x = -5.65685
+	y = 5.65685
+	z = -27
+standard right ear coil position relative to dewar (cm):
+	x = 5.65685
+	y = -5.65685
+	z = -27
+measured nasion coil position relative to dewar (cm):
+	x = 7.75137
+	y = 7.25869
+	z = -26.944
+measured left ear coil position relative to dewar (cm):
+	x = -5.21552
+	y = 5.65224
+	z = -30.1153
+measured right ear coil position relative to dewar (cm):
+	x = 6.35241
+	y = -5.51959
+	z = -29.303
+measured nasion coil position relative to head (cm):
+	x = 10.5343
+	y = 2.22045e-16
+	z = 3.55271e-15
+measured left ear coil position relative to head (cm):
+	x = -0.236654
+	y = 8.04771
+	z = -3.55271e-15
+measured right ear coil position relative to head (cm):
+	x = 0.236654
+	y = -8.04771
+	z = 3.55271e-15
+

BIN
Subject 19/sub-19_task-arrow_run-3.ds/sub-19_task-arrow_run-3.infods


+ 1 - 0
Subject 19/sub-19_task-arrow_run-3.ds/sub-19_task-arrow_run-3.meg4

@@ -0,0 +1 @@
+/annex/objects/MD5-s1939800008--caf1f4872e09968a9e353818de8ab682

+ 17 - 0
Subject 19/sub-19_task-arrow_run-3.ds/sub-19_task-arrow_run-3.newds

@@ -0,0 +1,17 @@
+// 
+// These parameters will appear in the new dataset.
+// 
+NewDatasetFields
+{
+	site:	
+	system:	DSQ-2010
+	institute:	
+	protocol:	parkinsons.rp
+	purpose:	
+	keywords:	parkinson, Liz
+	coefsName:	/opt/ctf/hardware/M021/M021_2205.coef
+	sensName:	/opt/ctf/hardware/M021/M021_2205.sens
+	appName:	Acq patch3-4.17-linux-20040429
+	systemType:	cmeg
+	bandwidth:	0.000000, 300.000000
+}

BIN
Subject 19/sub-19_task-arrow_run-3.ds/sub-19_task-arrow_run-3.res4