# KinematicAnalysis

Supplementary data for bachelor's thesis: "Kinematic Analysis of Sensory Motor Deficit after Experimental Stroke"

## Files:
**features.csv** → file containing results for calculated features for all video files

**fps_file.csv** → file contains frame rates for every video prefix

### Codes:
**1_feature_calc.ipynb** → Data preprocessing feature calculations

**2_feature_ML.ipynb** → Different machine learning classifiers for classification by features

**3_feature_RF.ipynb** → Random forest classifier

**4_Classifier.ipynb** → Neural network classifier for unbiased analysis

### PreprocessedData:
***_preprocessed_crop.csv** → used for neural network classifier

***_preprocessed_nan_crop.csv** → used for feature analysis

### RawData:
***.csv** → raw data files containing coordinates from DLC pose estimation (19 tracking points)


| MOp stroke |    |     |     | MOs stroke |    |    |     | WM stroke |    |    |     | Mop/MOs sham |    |    |     | WM sham   |    |    |     |
|------------|----|-----|-----|------------|----|----|-----|-----------|----|----|-----|--------------|----|----|-----|-----------|----|----|-----|
| Mouse ID   | BL | P3  | P28 | Mouse ID   | BL | P3 | P28 | Mouse ID  | BL | P3 | P28 | Mouse ID     | BL | P3 | P28 | Mouse ID  | BL | P3 | P28 |
| PB_T3_3_1  | 0  | 4   | 4   | PB_T3_18_1 | 4  | 4  | 0   | PB_V1_1_1 | 4  | 4  | 4   | PB_T3_3_3    | 0  | 4  | 4   | PB_V1_1_2 | 4  | 4  | 4   |
| PB_T3_3_2  | 0  | 4   | 4   | PB_T3_18_4 | 4  | 4  | 4   | PB_V1_2_2 | 4  | 4  | 4   | PB_T3_4_1    | 0  | 4  | 3   | PB_V1_1_3 | 4  | 4  | 4   |
| PB_T3_4_2  | 0  | 4   | 4   | PB_T3_18_5 | 4  | 4  | 4   | PB_V1_2_3 | 4  | 4  | 4   | PB_T3_5_1    | 0  | 4  | 5   | PB_V1_3_2 | 4  | 4  | 4   |
| PB_T3_4_3  | 0  | 4   | 4   | PB_T3_19_1 | 4  | 4  | 4   | PB_V1_3_1 | 4  | 4  | 4   | PB_T3_7_4    | 0  | 3  | 0   | PB_V1_3_4 | 4  | 4  | 4   |
| PB_T3_4_4  | 0  | 4   | 4   | PB_T3_20_1 | 4  | 4  | 4   | PB_V1_3_3 | 4  | 4  | 4   | PB_T3_8_2    | 0  | 4  | 0   | PB_V1_4_1 | 4  | 4  | 4   |
| PB_T3_4_5  | 0  | 4   | 4   | PB_T3_21_1 | 4  | 4  | 4   | PB_V1_5_1 | 4  | 4  | 4   | PB_T3_9_2    | 0  | 0  | 0   | PB_V1_5_2 | 4  | 4  | 4   |
| PB_T3_5_2  | 0  | 4   | 4   | PB_T3_21_3 | 4  | 4  | 4   | PB_V1_5_3 | 4  | 4  | 4   | PB_T3_10_1   | 4  | 4  | 0   | PB_V1_6_1 | 4  | 4  | 4   |
| PB_T3_6_1  | 0  | 5   | 0   |            |    |    |     | PB_V1_5_5 | 4  | 4  | 4   | PB_T3_11_1   | 4  | 4  | 0   | PB_V1_6_3 | 4  | 4  | 4   |
| PB_T3_7_2  | 0  | 4   | 0   |            |    |    |     | PB_V1_6_2 | 4  | 4  | 4   | PB_T3_12_3   | 4  | 4  | 4   | PB_V1_7_2 | 4  | 4  | 4   |
| PB_T3_8_1  | 0  | 5   | 0   |            |    |    |     | PB_V1_7_1 | 4  | 4  | 4   | PB_T3_13_2   | 4  | 4  | 4   | PB_V1_8_1 | 4  | 4  | 4   |
| PB_T3_8_3  | 0  | 4   | 0   |            |    |    |     | PB_V1_8_2 | 4  | 4  | 4   | PB_T3_13_3   | 4  | 4  | 4   | PB_V1_8_3 | 4  | 4  | 4   |
| PB_T3_8_4  | 0  | 4   | 0   |            |    |    |     |           |    |    |     | PB_T3_14_2   | 4  | 4  | 4   |           |    |    |     |
| PB_T3_8_5  | 0  | 4   | 0   |            |    |    |     |           |    |    |     | PB_T3_14_4   | 3  | 4  | 4   |           |    |    |     |
| PB_T3_10_2 | 4  | 4   | 0   |            |    |    |     |           |    |    |     | PB_T3_15_2   | 4  | 4  | 4   |           |    |    |     |
| PB_T3_10_3 | 4  | 4   | 0   |            |    |    |     |           |    |    |     | PB_T3_16_1   | 4  | 4  | 4   |           |    |    |     |
| PB_T3_12_1 | 3  | 4   | 4   |            |    |    |     |           |    |    |     | PB_T3_17_2   | 4  | 4  | 4   |           |    |    |     |
| PB_T3_12_4 | 4  | 4   | 4   |            |    |    |     |           |    |    |     | PB_T3_18_2   | 4  | 4  | 4   |           |    |    |     |
| PB_T3_13_4 | 4  | 4   | 4   |            |    |    |     |           |    |    |     | PB_T3_18_3   | 4  | 4  | 0   |           |    |    |     |
| PB_T3_14_1 | 4  | 4   | 4   |            |    |    |     |           |    |    |     | PB_T3_19_2   | 4  | 4  | 4   |           |    |    |     |
| PB_T3_14_3 | 4  | 4   | 4   |            |    |    |     |           |    |    |     | PB_T3_19_3   | 4  | 4  | 4   |           |    |    |     |
| PB_T3_15_1 | 4  | 4   | 4   |            |    |    |     |           |    |    |     | PB_T3_20_2   | 4  | 4  | 4   |           |    |    |     |
| PB_T3_16_2 | 4  | 4   | 4   |            |    |    |     |           |    |    |     | PB_T3_21_2   | 4  | 4  | 4   |           |    |    |     |
| PB_T3_16_3 | 4  | 4   | 4   |            |    |    |     |           |    |    |     |              |    |    |     |           |    |    |     |
| PB_T3_17_1 | 4  | 4   | 4   |            |    |    |     |           |    |    |     |              |    |    |     |           |    |    |     |
| PB_T3_17_3 | 4  | 4   | 4   |            |    |    |     |           |    |    |     |              |    |    |     |           |    |    |     |
| Sum        | 47 | 102 | 68  |            | 28 | 28 | 24  |           | 44 | 44 | 44  |              | 63 | 83 | 64  |           | 44 | 44 | 44  |