# 1 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/EPI.ppg" ;**************************************************************** ; ; Copyright (c) 2001 - 2003 ; Bruker BioSpin MRI GmbH ; D-76275 Ettlingen, Germany ; ; All Rights Reserved ; ; EPI - echo planar imaging method ; ;**************************************************************** ; ; d0 - TR padding ; d1 - refocusing ; d2 - TE padding ; d3 = PVM_RampTime + PVM_InterGradientWaitTime ; d4 = PVM_RiseTime ; d5 = spoiler ; d7 - TE padding (spin echo) ; d8 = SCON / BLKTR_MAN (Amplifier preblanking) # 1 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/MRI.include" 1 ;**************************************************************** ; ; $Source: /pv/CvsTree/pv/gen/src/prg/methManag/PPG/Attic/MRI.include,v $ ; ; Copyright (c) 2006 ; Bruker BioSpin MRI GmbH ; D-76275 Ettlingen, Germany ; ; All Rights Reserved ; ;;**************************************************************** ;MRI.include # 1 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/Avance.incl" 1 ;Avance3.incl ; for AV III ; ;avance-version (13/06/17) ; ;$CLASS=HighRes Incl ;$COMMENT= # 169 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/Avance.incl" ;$Id: Avance3.incl,v 1.9.6.1 2013/06/17 15:32:55 pfre Exp $ # 14 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/MRI.include" 2 define delay aqq define delay deparx define delay derxadc define delay rdepa # 21 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/MRI.include" "aqq=dw*td" "rdepa=de-depa" "deparx=depa-derx" "derxadc=derx-deadc" ; contents of De2.incl - usage for different hardware versions to ; be checked - intermediate solution to support Jobs define delay rde1 # 31 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/MRI.include" "rde1=de-de1" # 44 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/MRI.include" ; end of contents of De2.incl # 65 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/MRI.include" # 74 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/MRI.include" # 128 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/MRI.include" # 129 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/MRI.include" # 141 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/MRI.include" # 22 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/EPI.ppg" 2 preset off # 26 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/EPI.ppg" define delay durEpi = {$PVM_EpiModuleTime} "durEpi = durEpi/1000" ;counter of dummy scans (not acquired; DS set to 0) define loopcounter lcDs "lcDs = l0" # 1 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/epiHead.mod" 1 ;**************************************************************** ; ; Copyright (c) 2003 ; Bruker BioSpin MRI GmbH ; D-76275 Ettlingen, Germany ; ; All Rights Reserved ; $Id: epiHead.mod,v 1.15 2013/05/29 13:46:09 fhen Exp $ ; Declaration of pulseprogram parameters for epi module ; ;**************************************************************** define delay EpiD0 = {$PVM_EpiD0} define delay EpiD1 = {$PVM_EpiD1} define delay EpiD2 = {$PVM_EpiD2} define delay EpiD3 = {$PVM_EpiD3} define delay EpiD4 = {$PVM_EpiD4} define delay EpiD5 = {$PVM_EpiD5} define delay EpiD7 = {$PVM_EpiD7} define delay EpiD8 = {$PVM_EpiD8} define delay EpiD9 = {$PVM_EpiD9} define delay EpiD10 = {$PVM_EpiD10} define delay EpiD11 = {$PVM_EpiD11} define delay EpiD12 = {$PVM_EpiD12} define delay EpiD13 = {$PVM_EpiD13} define list Interleaving={$PVM_EpiInterleavingFunction} # 29 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/epiHead.mod" define delay Epi20u_de "Epi20u_de = 20u - de" define list EpiVd = {$PVM_EpiVdList} # 34 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/EPI.ppg" 2 # 1 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/PrepModulesHead.mod" 1 ;**************************************************************** ; ; Copyright (c) 2003-2007 ; Bruker BioSpin MRI GmbH ; D-76275 Ettlingen, Germany ; ; $Id: PrepModulesHead.mod,v 1.19 2012/01/20 10:19:48 wemch Exp $ ; ; All Rights Reserved ; ; Declaration of pulseprogram parameters and subroutines for ; preparation modules ; ; Must be included after MRI.include! ; ;**************************************************************** # 18 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/PrepModulesHead.mod" ;**** Fat Suppression **** # 1 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/FatSupDef.mod" 1 ;**************************************************************** ; ; Copyright (c) 2002-2007 ; Bruker BioSpin MRI GmbH ; D-76275 Ettlingen, Germany ; ; $Id: FatSupDef.mod,v 1.7 2013/07/05 14:15:26 sako Exp $ ; ; All Rights Reserved ; ; FatSupDef.mod : Declaration of Fat Suppression Subroutine ; ;**************************************************************** if (PVM_FatSupPerform == Yes) { define pulse fatSupPul = {$PVM_FatSupRfLength} define list fatSupList = {$PVM_FatSupFL} define delay fatSupRamp = {$PVM_FatSupRampTime} define delay fatSupAmp = {$PVM_FatSupAmpEnable} define delay fatSupGrad = {$PVM_FatSupGradWait} define delay fatSupSpoil = {$PVM_FatSupSpoilDur} # 25 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/FatSupDef.mod" ; convert from ms to s "fatSupRamp = fatSupRamp / 1000" "fatSupAmp = fatSupAmp / 1000" "fatSupGrad = fatSupGrad / 1000" "fatSupSpoil = fatSupSpoil / 1000" } subroutine FatSup # 20 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/PrepModulesHead.mod" 2 ;**** Flow Saturation **** # 1 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/FlowSatDef.mod" 1 ;**************************************************************** ; ; Copyright (c) 2005-2007 ; Bruker BioSpin MRI GmbH ; D-76275 Ettlingen, Germany ; ; $Id: FlowSatDef.mod,v 1.7 2013/06/04 10:11:30 sako Exp $ ; ; All Rights Reserved ; ; FlowSatDef.mod: Declaration of subroutines for Flow Saturation ; call ; subr FlowSat() ; subr FlowSatInit() ; subr FlowSatInc() ; ;**************************************************************** if(PVM_InFlowSatOnOff == 1) { define list modlis4 = {$PVM_InFlowSatFL} define list flowSatGrad={$PVM_InFlowSatGrad} define delay SfD0 = {$PVM_SfD0} define delay SfD1 = {$PVM_SfD1} define delay SfD2 = {$PVM_SfD2} define pulse SfP0 = {$PVM_SfP0} define loopcounter SfLp0 = {$PVM_SfLp0} } subroutine FlowSat subroutine FlowSatInc subroutine FlowSatInit # 24 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/PrepModulesHead.mod" 2 ;**** Inversion Pulse **** # 1 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/InvPulseDef.mod" 1 ;**************************************************************** ; ; Copyright (c) 2002-2007 ; Bruker BioSpin MRI GmbH ; D-76275 Ettlingen, Germany ; ; $Id: InvPulseDef.mod,v 1.2 2010/12/15 10:52:31 mah Exp $ ; ; All Rights Reserved ; ; InvPulseDef.mod : Declaration of Inversion Pulse subroutine ; ; call ; subr InvPulse() ; ;**************************************************************** ; ; PVM_InvRFPulseArr : ; ; sp22 TPQQ[14].name : PVM_InvRFPulsePropertyArr[0].Filename ; ; PVM_IpP0 : PVM_InvRFPulseArr[0].PulseLength ; ; PVM_IpD2 : PVM_InvPulseDelay[0] ; PVM_IpD3 : PVM_InvPulseSpoilTime[0] ; PVM_IpD1 : CONFIG_amplifier _enable ; PVM_IpD0 : PVM_RampTime ; if(PVM_InvPulseOnOff == 1) { define list modlis2= {$PVM_InvPulseOffsetHz} define delay IpD0 = {$PVM_IpD0} define delay IpD1 = {$PVM_IpD1} define delay IpD2 = {$PVM_IpD2} define delay IpD3 = {$PVM_IpD3} define pulse IpP0 = {$PVM_IpP0} } subroutine InvPulse # 28 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/PrepModulesHead.mod" 2 ;**** Magnetisation Transfer **** # 1 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/MagTransDef.mod" 1 ;**************************************************************** ; $Source: /pv/CvsTree/pv/gen/src/prg/methManag/PPG/Attic/MagTransDef.mod,v $ ; ; Copyright (c) 2005-2007 ; Bruker BioSpin MRI GmbH ; D-76275 Ettlingen, Germany ; ; All Rights Reserved ; ; MagTransDef.mod: Declaration of subroutine for Magnetization ; transfer ; call ; subr MagTrans() ; ; $Id: MagTransDef.mod,v 1.6.2.1 2015/03/24 14:30:00 sako Exp $ ;**************************************************************** ;**** Magnetisation Transfer Module **** if(PVM_MagTransOnOff) { define list modlis3 = {$PVM_MagTransFL} define delay MtD0 = {$PVM_MtD0} define delay MtD1 = {$PVM_MtD1} define delay MtD2 = {$PVM_MtD2} define delay MtD3 = {$PVM_MtD3} # 28 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/MagTransDef.mod" define pulse MtP0 = {$PVM_MtP0} define loopcounter MtLp0 = {$PVM_MtLp0} } subroutine MagTrans # 32 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/PrepModulesHead.mod" 2 ;**** Saturation Pulse **** # 1 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/SatPulseDef.mod" 1 ;**************************************************************** ; ; Copyright (c) 2002-2003 ; Bruker BioSpin MRI GmbH ; D-76275 Ettlingen, Germany ; ; $Id: SatPulseDef.mod,v 1.3 2010/12/15 10:52:31 mah Exp $ ; ; All Rights Reserved ; ; SatPulseDef.mod : Declaration of Saturation Pulse subroutines ; call ; subr SatPulse() ; ;**************************************************************** ; ; PVM_SatRFPulseArr : ; ; sp28 DPQQ[12].name : PVM_SatRFPulsePropertyArr[0].Filename ; sp29 DPQQ[13].name : PVM_SatRFPulsePropertyArr[1].Filename ; sp30 DPQQ[14].name : PVM_SatRFPulsePropertyArr[2].Filename ; sp31 DPQQ[15].name : PVM_SatRFPulsePropertyArr[3].Filename ; ; PVM_SpP0 : PVM_SatRFPulseArr[0].PulseLength ; PVM_SpP1 : PVM_SatRFPulseArr[1].PulseLength ; PVM_SpP2 : PVM_SatRFPulseArr[2].PulseLength ; PVM_SpP3 : PVM_SatRFPulseArr[3].PulseLength ; ; PVM_SpD2 : PVM_SatPulseDelay1[0] ; PVM_SpD6 : PVM_SatPulseSpoilTime[0] ; PVM_SpD10 : PVM_SatPulseDelay2[0] ; PVM_SpD3 : PVM_SatPulseSpoilTime[1] ; PVM_SpD7 : PVM_SatPulseDelay1[1] ; PVM_SpD11 : PVM_SatPulseDelay2[1] ; PVM_SpD4 : PVM_SatPulseDelay1[2] ; PVM_SpD8 : PVM_SatPulseSpoilTime[2] ; PVM_SpD12 : PVM_SatPulseDelay2[2] ; PVM_SpD5 : PVM_SatPulseDelay1[3] ; PVM_SpD9 : PVM_SatPulseSpoilTime[3] ; PVM_SpD13 : PVM_SatPulseDelay2[3] ; if(PVM_SatPulseOnOff == 1) { define list modlis7 = {$PVM_SatPulseOffsetHz} define delay SpD0 = {$PVM_SpD0} define delay SpD1 = {$PVM_SpD1} define delay SpD2 = {$PVM_SpD2} define delay SpD3 = {$PVM_SpD3} define delay SpD4 = {$PVM_SpD4} define delay SpD5 = {$PVM_SpD5} define delay SpD6 = {$PVM_SpD6} define delay SpD7 = {$PVM_SpD7} define delay SpD8 = {$PVM_SpD8} define delay SpD9 = {$PVM_SpD9} define delay SpD10 = {$PVM_SpD10} define delay SpD11 = {$PVM_SpD11} define delay SpD12 = {$PVM_SpD12} define delay SpD13 = {$PVM_SpD13} define pulse SpP0 = {$PVM_SpP0} define pulse SpP1 = {$PVM_SpP1} define pulse SpP2 = {$PVM_SpP2} define pulse SpP3 = {$PVM_SpP3} # 66 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/SatPulseDef.mod" } subroutine SatPulse # 36 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/PrepModulesHead.mod" 2 ;*** FOV Saturation *** # 1 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/FovSatDef.mod" 1 ;**************************************************************** ; ; Copyright (c) 2002-2007 ; Bruker BioSpin MRI GmbH ; D-76275 Ettlingen, Germany ; ; $Id: FovSatDef.mod,v 1.8 2013/08/06 08:09:43 sako Exp $ ; ; All Rights Reserved ; ; FovSat.mod : Declaration of FOV Saturation subroutine ; call: subr FovSat() ; ;**************************************************************** if (PVM_FovSatOnOff == On) { define pulse fovSatPul = {$PVM_FovSatRfLength} define list fovSatList = {$PVM_FovSatFL} define delay fovSatRamp = {$PVM_FovSatRampTime} define delay fovSatAmp = {$PVM_FovSatAmpEnable} define delay fovSatGrad = {$PVM_FovSatGradWait} define delay fovSatSpoil = {$PVM_FovSatSpoilDur} # 27 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/FovSatDef.mod" ; convert from ms to s "fovSatRamp = fovSatRamp / 1000" "fovSatAmp = fovSatAmp / 1000" "fovSatGrad = fovSatGrad / 1000" "fovSatSpoil = fovSatSpoil / 1000" } subroutine FovSat # 53 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/FovSatDef.mod" ; backwards compatibility subroutine SatSlices # 40 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/PrepModulesHead.mod" 2 ;**** Black Blood **** # 1 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/BlBloodDef.mod" 1 ;**************************************************************** ; ; Copyright (c) 2007 ; Bruker BioSpin MRI GmbH ; D-76275 Ettlingen, Germany ; ; $Id: BlBloodDef.mod,v 1.4 2013/06/04 10:11:30 sako Exp $ ; ; All Rights Reserved ; ; BlBloodDef.mod : Declaration of Black blood subroutine ; ; call ; subr BlBlood(ph0) : Black blood preparation with RF phaselist ; ph0 ; ;**************************************************************** if(PVM_BlBloodOnOff) { define list modlis8 = {$PVM_BlBloodFL} define delay BlbD0 = {$PVM_BlbD0} define delay BlbD1 = {$PVM_BlbD1} define delay BlbD2 = {$PVM_BlbD2} define delay BlbD3 = {$PVM_BlbD3} define pulse BlbP0 = {$PVM_BlbP0} } subroutine BlBlood # 44 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/PrepModulesHead.mod" 2 ;**** Trigger **** # 1 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/TriggerDef.mod" 1 ;**************************************************************** ; ; Copyright (c) 1998-2003 ; Bruker BioSpin MRI GmbH ; D-76275 Ettlingen, Germany ; ; All Rights Reserved ; ; TriggerDef.mod - Trigger Module ; ;**************************************************************** if (PVM_TriggerModule == On) { define delay trigDur = {$PVM_TriggerDur} define delay trigDel = {$PVM_TriggerDelay} ; convert from ms to s "trigDur = trigDur / 1000" "trigDel = trigDel / 1000" } subroutine Trigger subroutine TriggerPhase subroutine TriggerSlice # 48 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/PrepModulesHead.mod" 2 ;**** Trigger Out **** # 1 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/TriggerOutDef.mod" 1 ;**************************************************************** ; ; Copyright (c) 2003 ; Bruker BioSpin MRI GmbH ; D-76275 Ettlingen, Germany ; ; All Rights Reserved ; $Id: TriggerOutDef.mod,v 1.2 2013/07/05 14:15:26 sako Exp $ ;**************************************************************** if (PVM_TriggerOutOnOff == On) { define delay trigOutDur = {$PVM_TriggerOutDur} define delay trigOutDel = {$PVM_TriggerOutDelay} ; convert from ms to s "trigOutDur = trigOutDur / 1000" "trigOutDel = trigOutDel / 1000" } subroutine TriggerOut subroutine TriggerOutStart subroutine TriggerOutSlice subroutine TriggerOutVolume # 52 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/PrepModulesHead.mod" 2 ;**** Outer Volume Suppression **** # 1 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/WsOvsDef.mod" 1 ;**************************************************************** ; ; Copyright (c) 2005-2007 ; Bruker BioSpin MRI GmbH ; D-76275 Ettlingen, Germany ; ; $Id: WsOvsDef.mod,v 1.6 2013/07/08 08:33:32 josh Exp $ ; ; All Rights Reserved ; ; WsOvsDef.mod: Declaration of water suppression and Outer ; volume suppression subroutines ; ; call ; subr Ovs(ph0) ; execution of OVS with ph0 phaselist ; ; subr WsOvs(ph0,ph1) : execution of OVS with ph0 and WS with ph1 ; phaselist ;**************************************************************** ;**** OuterVolumeSuppression **** if(PVM_OvsOnOff == 1) { define list Ovslist={$PVM_OvsFrequencyList} define delay OvsD0 = {$PVM_OvsD0} define delay OvsD1 = {$PVM_OvsD1} define pulse OvsP0 = {$PVM_OvsP0} } subroutine Ovs # 59 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/WsOvsDef.mod" ;*** WaterSuppression Module with OVS **** if (PVM_WsMode) { define list Wslist={$PVM_WsOffsetHz} define pulse WsP0 = {$PVM_WsP0} define pulse WsP1 = {$PVM_WsP1} define pulse WsP2 = {$PVM_WsP2} define delay WsNp0 "WsNp0 = WsP0" define delay WsNp1 "WsNp1 = WsP1" define delay WsNp2 "WsNp2 = WsP2" define list ChD1={$PVM_ChppgD1} define list ChD2={$PVM_ChppgD2} define list VpD1={$PVM_VpppgD1} define list VpD2={$PVM_VpppgD2} # 79 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/WsOvsDef.mod" } subroutine WsOvsMain subroutine WsOvs subroutine Ws # 56 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/PrepModulesHead.mod" 2 ;**** Solvent Suppression module **** # 1 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/WsSatDef.mod" 1 ;****************************************************************** ; ; Copyright (c) 2002-2007 ; Bruker BioSpin MRI GmbH ; D-76275 Ettlingen, Germany ; ; $Id: WsSatDef.mod,v 1.11 2013/08/23 08:37:06 josh Exp $ ; ; All Rights Reserved ; ; WsSatDef.mod - Declaration of water suppression and FOV saturation ; subroutines ; call ; subr WsSat(ph0) : execution of WS with ph0 phaselist and ; FOV saturation (as passed as argument) ; ;******************************************************************* ; Definitions for WsPpgParams are included in WsOvsDef.mod subroutine WsSatMain subroutine WsSat # 60 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/PrepModulesHead.mod" 2 ;**** Selective Inversion Recovery **** # 1 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/SelSliceIrDef.mod" 1 ;**************************************************************** ; ; Copyright (c) 2007 ; Bruker BioSpin MRI GmbH ; D-76275 Ettlingen, Germany ; ; $Id: SelSliceIrDef.mod,v 1.5 2013/06/04 10:11:30 sako Exp $ ; ; All Rights Reserved ; ; SelSliceIrDef.mod : declaration of slice Selective Inversion ; Recovery subroutine ; call SliceSelIr() ; ; ;**************************************************************** if(PVM_SelIrOnOff) { define list IrFL = {$PVM_SelIrFL} define delay IrD0 = {$PVM_SelIrD0} define delay IrD1 = {$PVM_SelIrD1} define delay IrD2 = {$PVM_SelIrD2} define delay IrD3 = {$PVM_SelIrD3} define delay IrD4 = {$PVM_SelIrD4} # 28 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/SelSliceIrDef.mod" define pulse IrP0 = {$PVM_SelIrP0} define loopcounter IrL0 = {$PVM_SelIrL0} } subroutine SliceSelIr # 64 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/PrepModulesHead.mod" 2 ;**** Tagging **** # 1 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/TagDef.mod" 1 ;**************************************************************** ; ; Copyright (c) 2007 ; Bruker BioSpin MRI GmbH ; D-76275 Ettlingen, Germany ; ; $Id: TagDef.mod,v 1.6 2013/06/05 12:55:35 sako Exp $ ; ; All Rights Reserved ; ; TagDef.mod : Declaration of tagging subroutine ; call ; subr Tagging() ; ;**************************************************************** if(PVM_TaggingOnOff) { define list taggfreq={$PVM_TaggingFL} define delay TaggD0 = {$PVM_TaggingD0} define delay TaggD1 = {$PVM_TaggingD1} define delay TaggD2 = {$PVM_TaggingD2} define delay TaggD3 = {$PVM_TaggingD3} define delay TaggD4 = {$PVM_TaggingD4} define delay TaggD5 = {$PVM_TaggingD5} # 28 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/TagDef.mod" define pulse TaggP0 = {$PVM_TaggingP0} define loopcounter TaggL0 = {$PVM_TaggingLp0} } subroutine Tagging # 68 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/PrepModulesHead.mod" 2 ;**** Noe **** # 1 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/NoeDef.mod" 1 ;**************************************************************** ; ; Copyright (c) 2007 ; Bruker BioSpin MRI GmbH ; D-76275 Ettlingen, Germany ; ; $Id: NoeDef.mod,v 1.1 2007/07/02 14:26:00 mawi Exp $ ; ; All Rights Reserved ; ; NoeDef.mod: Declaration of Nuclear Overhouser Enhancement ; subroutine ; call ; subr Noe() ; ;**************************************************************** if(PVM_NoeOnOff == On) { define delay NoeD0 = {$PVM_NoeD0} define delay NoeD1 = {$PVM_NoeD1} } subroutine Noe # 72 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/PrepModulesHead.mod" 2 ;**** Evolution **** # 1 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/EvolutionDef.mod" 1 ;**************************************************************** ; ; Copyright (c) 1998-2003 ; Bruker BioSpin MRI GmbH ; D-76275 Ettlingen, Germany ; ; All Rights Reserved ; ; EvolutionDef.mod - Evolution Module ; ;**************************************************************** if (PVM_EvolutionOnOff == On) { define delay evolDel = {$PVM_EvolutionDelay} define list evolTime = {$PVM_EvolutionTime} } subroutine Evolution # 76 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/PrepModulesHead.mod" 2 # 35 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/EPI.ppg" 2 # 37 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/EPI.ppg" dccorr \n \n if (CONFIG_preemp_type == GREAT_60) \n { \n if (CONFIG_instrument_type != Avance_III) \n { \n 500m setnmr0|34|33|32 \n } \n else \n { \n 200u setnmr0|34|33|32 \n } \n } \n if (CONFIG_preemp_type == DPP_with_SW_Blanking) \n {\n 10u ctrlgrad 0 \n 10u grad{(0)|(0)|(0) } \n 200u setnmr0|34|33|32 \n }\n if (CONFIG_preemp_type == DPP) \n { \n 10u groff \n } ; GRAPPA adjustment? if(PVM_EpiAdjustMode==2) { define list ACQ_spatial_phase_2 } else { grad_zero_for_gs } grad_matrix.res subr TriggerOutStart ;EXEC_begin TriggerOutStart TriggerOutStart() # 30 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/TriggerOutDef.mod" if (PVM_TriggerOutMode == AT_START) { ;EXEC_begin TriggerOut TriggerOut() # 21 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/TriggerOutDef.mod" if (PVM_TriggerOutOnOff == On) { trigOutDel setnmr3|28 trigOutDur setnmr3^28 } ;EXEC_end TriggerOut } ;EXEC_end TriggerOutStart # 52 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/EPI.ppg" # 54 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/EPI.ppg" start, 10u subr TriggerPhase ;EXEC_begin TriggerPhase TriggerPhase() # 45 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/TriggerDef.mod" if (PVM_TriggerMode == per_PhaseStep) { ;EXEC_begin Trigger Trigger() # 23 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/TriggerDef.mod" if (PVM_TriggerModule == On) { trigDur setnmr3|6 if (CONFIG_instrument_type == Avance_III) { trigDur trignl1 trigDur trigpe3 } else { trigDur trigDur trigpl1 } trigDur setnmr3^6 trigDel } ;EXEC_end Trigger } ;EXEC_end TriggerPhase # 56 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/EPI.ppg" subr TriggerOutVolume ;EXEC_begin TriggerOutVolume TriggerOutVolume() # 46 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/TriggerOutDef.mod" if (PVM_TriggerOutMode == PER_VOLUME) { ;EXEC_begin TriggerOut TriggerOut() # 21 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/TriggerOutDef.mod" if (PVM_TriggerOutOnOff == On) { trigOutDel setnmr3|28 trigOutDur setnmr3^28 } ;EXEC_end TriggerOut } ;EXEC_end TriggerOutVolume # 57 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/EPI.ppg" subr Tagging ;EXEC_begin Tagging Tagging() # 32 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/TagDef.mod" if(PVM_TaggingOnOff) { 1u taggfreq.res if(PVM_TaggingMode == DANTE) { 10u taggfreq:f1 TaggD4 grad_ramp{PVM_TaggingGradAmp1, PVM_TaggingGradAmp2,0} TaggD5 gatepulse 1 (TaggP0:sp45):f1 tag119,TaggD2 (TaggP0:sp45):f1 lo to tag119 times TaggL0 TaggD4 grad_off if(PVM_TaggingDir == Tagging_grid) { TaggD1 taggfreq.inc 10u taggfreq:f1 TaggD4 grad_ramp{PVM_TaggingGradAmp3,PVM_TaggingGradAmp4,0} (TaggP0:sp45):f1 tag220,TaggD2 (TaggP0:sp45):f1 lo to tag220 times TaggL0 TaggD4 grad_off } } if(PVM_TaggingMode == SPAMM) { 10u taggfreq:f1 TaggD5 gatepulse 1 (TaggP0:sp45):f1 tag321,TaggD2 grad_ramp{PVM_TaggingGradAmp1,PVM_TaggingGradAmp2,0} TaggD4 grad_off (TaggP0:sp45):f1 lo to tag321 times TaggL0 if(PVM_TaggingDir == Tagging_grid) { taggfreq.inc 10u taggfreq:f1 (TaggP0:sp45):f1 tag422,TaggD2 grad_ramp{PVM_TaggingGradAmp3,PVM_TaggingGradAmp4,0} TaggD4 grad_off (TaggP0:sp45):f1 lo to tag422 times TaggL0 } } 10u TaggD3 grad_ramp{PVM_TaggingSpoilAmp,0,0} TaggD4 grad_off TaggD0 } ;EXEC_end Tagging # 58 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/EPI.ppg" ;----------------------------------start of the main loop ---------- slice, 5u fq8(receive):f1 5u subr TriggerSlice ;EXEC_begin TriggerSlice TriggerSlice() # 53 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/TriggerDef.mod" if (PVM_TriggerMode == per_Slice) { ;EXEC_begin Trigger Trigger() # 23 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/TriggerDef.mod" if (PVM_TriggerModule == On) { trigDur setnmr3|6 if (CONFIG_instrument_type == Avance_III) { trigDur trignl1 trigDur trigpe3 } else { trigDur trigDur trigpl1 } trigDur setnmr3^6 trigDel } ;EXEC_end Trigger } ;EXEC_end TriggerSlice # 63 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/EPI.ppg" subr TriggerOutSlice ;EXEC_begin TriggerOutSlice TriggerOutSlice() # 38 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/TriggerOutDef.mod" if (PVM_TriggerOutMode == PER_SLICE) { ;EXEC_begin TriggerOut TriggerOut() # 21 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/TriggerOutDef.mod" if (PVM_TriggerOutOnOff == On) { trigOutDel setnmr3|28 trigOutDur setnmr3^28 } ;EXEC_end TriggerOut } ;EXEC_end TriggerOutSlice # 64 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/EPI.ppg" # 66 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/EPI.ppg" ;----------------------------------preparation modules ------------- subr FovSat ;EXEC_begin FovSat FovSat() # 34 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/FovSatDef.mod" if (PVM_FovSatOnOff == On) { PVM_FovSatGrad.res fovSatList.res fov23, fovSatRamp grad_ramp{PVM_FovSatGrad[]} fovSatAmp fovSatList:f1 gatepulse 1 (fovSatPul :sp41):f1 fovSatSpoil fovSatList.inc grad_ramp{0, 0, PVM_FovSatSpoilAmp} PVM_FovSatGrad.inc lo to fov23 times PVM_FovSatNSlices fovSatRamp grad_off fovSatGrad } ;EXEC_end FovSat # 67 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/EPI.ppg" subr MagTrans ;EXEC_begin MagTrans MagTrans() # 33 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/MagTransDef.mod" if(PVM_MagTransOnOff) { 50u modlis3.res MtD1 mtc24,MtD2 modlis3:f1 gatepulse 1 MtP0:sp43:f1 lo to mtc24 times MtLp0 MtD3 grad_ramp{0, 0, PVM_MagTransSpoiler} MtD0 groff 100u } ;EXEC_end MagTrans # 68 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/EPI.ppg" subr FatSup ;EXEC_begin FatSup FatSup() # 32 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/FatSupDef.mod" if (PVM_FatSupPerform == Yes) { fatSupAmp fatSupList:f1 gatepulse 1 (fatSupPul :sp40):f1 fatSupSpoil grad_shape {0, 0, PVM_FatSupSpoilAmp} fatSupRamp grad_off fatSupGrad } ;EXEC_end FatSup # 69 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/EPI.ppg" d5 grad_ramp{0, 0, g2} ;----------------------------------slice selection------------------ d4 grad_ramp{0, 0, g0} fq1:f1 d8 gatepulse 1 (p0:sp0 ph0):f1 d3 grad_off ;----------------------------------slice rephase-------------------- d1 grad_ramp{0, 0, g1 } d4 grad_off if(PVM_SignalType == SignalType_Echo) { d7 d9 grad_ramp{0, 0, g3} d4 grad_ramp{0, 0, g0} gatepulse 1 (p1:sp1 ph1):f1 d9 grad_ramp{0, 0, g3} d4 grad_off } ;----------------------------------TE padding----------------------- d2 if "lcDs > 0" { # 1 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/epiDum.mod" 1 ;**************************************************************** ; ; Copyright (c) 2002-2005 ; Bruker BioSpin MRI GmbH ; D-76275 Ettlingen, Germany ; ; All Rights Reserved ; ; epiDum.mod - a version the Echo-Planar Imaging module without phase ; acquisition (for the dummy scans) ; ;**************************************************************** # 16 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/epiDum.mod" ;-------- version with shaped gradients: if(PVM_EpiRampMode != SystemRamp) { ;5u fqatofqb:f1 ;rdepa \n deparx adc ph0 syrec \n derxadc ph1:r \n deadc 10u if(PVM_EpiNShots != 1) { if(PVM_EpiEchoTimeShifting == Yes) { EpiVd ;EpiVd.inc } } if (PVM_EpiGradSync == Yes) { 1u trigpe3 } if(PVM_EpiPrefixNavYes) ;prefix navigator { EpiD12 ;cpdngs17:f1 } else { if(PVM_EpiDynCorr) { EpiD12 ;cpdngs17:f1 } } if(PVM_EpiDynCorr) ; dynamic ghost correction { EpiD13 grad_shape{EpiShape17() * 100, (0), (0)} EpiD5 grad_shape{EpiShape9() * 100, (0), (0)} EpiD11 grad_shape{EpiShape8() * 100, (0), (0)} ;plateau up EpiD5 grad_shape{EpiShape2() * 100, EpiShape15() * 100, (0)} ;ramp down EpiD11 grad_shape{EpiShape13() * 100, 0, 0} ;plateau down EpiD5 grad_shape{EpiShape12() * 100, EpiShape16() * 100, (0)} ;ramp up EpiD11 grad_shape{EpiShape8() * 100, (0), (0)} ;plateau up EpiD5 grad_shape{EpiShape10() * 100, (0), (0)} EpiD13 grad_shape{EpiShape17() * 100, (0) ,(0)} } # 59 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/epiDum.mod" 10u gc_control { EpiD4 grad_shape{EpiShape1() * 100, EpiShape3() * 100 + EpiShape18() * 100 * r2d , (0)-EpiShape14() * 100 * ACQ_spatial_phase_2} EpiD5 grad_shape{EpiShape9() * 100, EpiShape11() * 100 * Interleaving,0} EpiD11 grad_shape{EpiShape8() * 100, 0, 0} ;plateau up loop PVM_EpiEchoCounter { EpiD5 grad_shape{EpiShape2() * 100, EpiShape4() * 100, 0} ;ramp down EpiD11 grad_shape{EpiShape13() * 100, 0, 0} ;plateau down EpiD5 grad_shape{EpiShape12() * 100, EpiShape7() * 100, 0} ;ramp up EpiD11 grad_shape{EpiShape8() * 100, 0, 0} ;plateau up } EpiD5 grad_shape{EpiShape10() * 100, -EpiShape11() * 100 *Interleaving, 0} EpiD4 grad_shape{EpiShape5() * 100, EpiShape6() * 100,EpiShape14() * 100 * ACQ_spatial_phase_2} } EpiD1 # 78 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/epiDum.mod" if(PVM_EpiPrefixNavYes) ;prefix navigator: adc is already running { EpiD2 } else ;no prefix navigator or dyn corr: start adc now { if(PVM_EpiDynCorr) { EpiD2 } else { EpiD2 ;cpdngs17:f1 } } EpiD3 EpiD0 ;eoscnp if(PVM_EpiNShots != 1) { if(PVM_EpiEchoTimeShifting == Yes) { EpiVd ;EpiVd.inc } } } ;--------end of version ;----------------------- version with system ramps --------------------------- if(PVM_EpiRampMode == SystemRamp) { ;5u fqatofqb:f1 ;rdepa \n deparx adc ph0 syrec \n derxadc ph1:r \n deadc 10u if(PVM_EpiNShots != 1) { if(PVM_EpiEchoTimeShifting == Yes) { EpiVd ;EpiVd.inc } } if (PVM_EpiGradSync == Yes) { 1u trigpe3 } if(PVM_EpiPrefixNavYes) ;prefix navigator { EpiD12 ;cpdngs17:f1 } # 128 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/epiDum.mod" 10u gc_control { EpiD7 grad_ramp{PVM_EpiReadDephGrad * 100, 0, 0} EpiD8 grad_off EpiD9 grad_ramp{PVM_EpiReadEvenGrad * 100, 0, 0} loop PVM_EpiEchoCounter { EpiD10 grad_ramp{0, 0, 0} EpiD9 grad_ramp{PVM_EpiReadOddGrad * 100, 0, 0} EpiD10 grad_ramp{0, 0, 0} EpiD9 grad_ramp{PVM_EpiReadEvenGrad * 100, 0, 0} } EpiD8 grad_off EpiD7 grad_ramp{PVM_EpiReadDephGrad * 100, 0, 0} grad_off } EpiD1 if(PVM_EpiPrefixNavYes) ;prefix navigator: adc is already running { EpiD2 } if(!PVM_EpiPrefixNavYes) ;no prefix navigator: start adc now { EpiD2 ;cpdngs17:f1 } EpiD3 EpiD0 ;eoscnp if(PVM_EpiNShots != 1) { if(PVM_EpiEchoTimeShifting == Yes) { EpiVd ;EpiVd.inc } } } ;-------- end of version # 93 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/EPI.ppg" 2 } else { # 1 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/epi.mod" 1 ;**************************************************************** ; ; Copyright (c) 2002-2005 ; Bruker BioSpin MRI GmbH ; D-76275 Ettlingen, Germany ; ; All Rights Reserved ; ; epi.mod - an Echo-Planar Imaging module ; ;**************************************************************** # 14 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/epi.mod" ;-------- version with shaped gradients: if(PVM_EpiRampMode != SystemRamp) { ;5u fqatofqb:f1 rdepa \n deparx adc ph0 syrec \n derxadc ph1:r \n deadc Epi20u_de if(PVM_EpiNShots != 1) { if(PVM_EpiEchoTimeShifting == Yes) { EpiVd EpiVd.inc } } if (PVM_EpiGradSync == Yes) { 1u trigpe3 } if(PVM_EpiPrefixNavYes) ;prefix navigator { EpiD12 cpdngs17:f1 } else { if(PVM_EpiDynCorr) { EpiD12 cpdngs17:f1 } } if(PVM_EpiDynCorr) ; dynamic ghost correction { EpiD13 grad_shape{EpiShape17() * 100, (0), (0)} EpiD5 grad_shape{EpiShape9() * 100, (0), (0)} EpiD11 grad_shape{EpiShape8() * 100, (0), (0)} ;plateau up EpiD5 grad_shape{EpiShape2() * 100, EpiShape15() * 100, (0)} ;ramp down EpiD11 grad_shape{EpiShape13() * 100, 0, 0} ;plateau down EpiD5 grad_shape{EpiShape12() * 100, EpiShape16() * 100, (0)} ;ramp up EpiD11 grad_shape{EpiShape8() * 100, (0), (0)} ;plateau up EpiD5 grad_shape{EpiShape10() * 100, (0), (0)} EpiD13 grad_shape{EpiShape17() * 100, (0) ,(0)} } # 57 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/epi.mod" 10u gc_control { EpiD4 grad_shape{EpiShape1() * 100, EpiShape3() * 100 + EpiShape18() * 100 * r2d , (0)-EpiShape14() * 100 * ACQ_spatial_phase_2} EpiD5 grad_shape{EpiShape9() * 100, EpiShape11() * 100 * Interleaving,0} EpiD11 grad_shape{EpiShape8() * 100, 0, 0} ;plateau up loop PVM_EpiEchoCounter { EpiD5 grad_shape{EpiShape2() * 100, EpiShape4() * 100, 0} ;ramp down EpiD11 grad_shape{EpiShape13() * 100, 0, 0} ;plateau down EpiD5 grad_shape{EpiShape12() * 100, EpiShape7() * 100, 0} ;ramp up EpiD11 grad_shape{EpiShape8() * 100, 0, 0} ;plateau up } EpiD5 grad_shape{EpiShape10() * 100, -EpiShape11() * 100 *Interleaving, 0} EpiD4 grad_shape{EpiShape5() * 100, EpiShape6() * 100,EpiShape14() * 100 * ACQ_spatial_phase_2} } EpiD1 if(PVM_EpiPrefixNavYes) ;prefix navigator: adc is already running { EpiD2 } else ;no prefix navigator or dyn corr: start adc now { if(PVM_EpiDynCorr) { EpiD2 } else { EpiD2 cpdngs17:f1 } } EpiD3 EpiD0 eoscnp if(PVM_EpiNShots != 1) { if(PVM_EpiEchoTimeShifting == Yes) { EpiVd EpiVd.inc } } } ;--------end of version ;----------------------- version with system ramps --------------------------- if(PVM_EpiRampMode == SystemRamp) { ;5u fqatofqb:f1 rdepa \n deparx adc ph0 syrec \n derxadc ph1:r \n deadc Epi20u_de if(PVM_EpiNShots != 1) { if(PVM_EpiEchoTimeShifting == Yes) { EpiVd EpiVd.inc } } if (PVM_EpiGradSync == Yes) { 1u trigpe3 } if(PVM_EpiPrefixNavYes) ;prefix navigator { EpiD12 cpdngs17:f1 } # 123 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/epi.mod" 10u gc_control { EpiD7 grad_ramp{PVM_EpiReadDephGrad * 100, PVM_EpiPhaseDephGrad * 100 +Interleaving * 100 *PVM_EpiPhaseEncGrad,0} EpiD8 grad_off EpiD9 grad_ramp{PVM_EpiReadEvenGrad * 100, 0, 0} loop PVM_EpiEchoCounter { EpiD10 grad_ramp{0, PVM_EpiBlipEvenGrad *100, 0} EpiD9 grad_ramp{PVM_EpiReadOddGrad * 100, 0, 0} EpiD10 grad_ramp{0, PVM_EpiBlipOddGrad * 100, 0} EpiD9 grad_ramp{PVM_EpiReadEvenGrad * 100, 0, 0} } EpiD8 grad_off EpiD7 grad_ramp{PVM_EpiReadDephGrad * 100, PVM_EpiPhaseRephGrad * 100 + Interleaving * 100 * PVM_EpiPhaseRewGrad, 0} grad_off } EpiD1 if(PVM_EpiPrefixNavYes) ;prefix navigator: adc is already running { EpiD2 } if(!PVM_EpiPrefixNavYes) ;no prefix navigator: start adc now { EpiD2 cpdngs17:f1 } EpiD3 EpiD0 eoscnp if(PVM_EpiNShots != 1) { if(PVM_EpiEchoTimeShifting == Yes) { EpiVd EpiVd.inc } } } ;-------- end of version # 97 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/EPI.ppg" 2 } # 101 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/EPI.ppg" goOn, 10u d0 grad_matrix.inc lo to slice times NSLICES grad_matrix.res d6 ;inter-volume delay "lcDs = lcDs - 1" if "lcDs >= 0" goto start ;dummy scans ;----------------------------------averaging loop------------------- 2.5u ipp0 lo to start times NA ;----------------------------------2d loop-------------------------- 2.5u rpp0 Interleaving.inc lo to start times PVM_EpiNShots 0u Interleaving.res ;----------------------------------3d loop-------------------------- if( ACQ_dim >= 3 ) { ACQ_spatial_phase_2.inc lo to start times ACQ_size[2] } ;----------------------------------repetitions loop------------------- lo to start times NR # 127 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/EPI.ppg" if (ACQ_scan_type != Scan_Experiment) \n{ \n goto start \n} exit ph0 = 0 2 ph1 = 0 # 135 "/opt/PV6.0.1/exp/stan/nmr/lists/pp/EPI.ppg"