authors:
  -
    firstname: 'Frederik Filip'
    lastname: Stæger
    affiliation: 'Center for Translational Neuromedicine, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark'
    id: 'ORCID:0000-0002-2295-8637'
  -
    firstname: Kristian
    lastname: Mortensen
    affiliation: 'Center for Translational Neuromedicine, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark'
  -
    firstname: Louis
    affiliation: 'Center for Translational Neuromedicine, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark'
    lastname: Kaufmann
  -
    firstname: Hajime
    affiliation: 'Center for Translational Neuromedicine, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark'
    lastname: Hirase
    id: 'ORCID:0000-0003-3806-6905'
  -
    firstname: Maiken
    affiliation: "Center for Translational Neuromedicine, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark\nand\nCenter for Translational Neuromedicine, University of Rochester Medical Center, Rochester, NY 14642, USA."
    lastname: Nedergaard
    id: 'ORCID:0000-0001-6502-6031'
title: 'A three-dimensional, population-based average of the C57BL/6 mouse brain from DAPI-stained coronal slices'
description: "The full data set and pipeline for constructing the three-dimensional, population-based average of the C57BL/6 mouse brain form DAPI-stained coronal slices.\nThis repository also contains a python implementation of automatic coronal brain slice segmentation.\nThe data set constitutes of all the raw slice images (.tif) in full resolution, the pre-processed version (.nii), the individually reconstructed brain volumes, and the final population-based average."
keywords:
  - Neuroscience
  - 'Mouse brain template'
  - 'C57BL/6 brain template'
  - DAPI
  - 'Population-based average'
  - 'Automatic segementation'
license:
  name: 'Creative Commons CC0 1.0 Public Domain Dedication'
  url: 'https://creativecommons.org/publicdomain/zero/1.0/'
resourcetype: Dataset