>>>>> started run at 30/11/2020 13:28:20{'data_path': ['H:/Sleep/20201029_GCaMP6f_8235_awake/7'], 'subfolders': [], 'save_path0': 'H:/Sleep/20201029_GCaMP6f_8235_awake/7', 'fast_disk': 'H:/Sleep/20201029_GCaMP6f_8235_awake/7', 'input_format': 'tif'}

tif

** Found 1 tifs - converting to binary **

2000 frames of binary, time 4.44 sec.

4000 frames of binary, time 6.62 sec.

6000 frames of binary, time 8.64 sec.

time 11.70 sec. Wrote 7663 tiff frames to binaries for 1 planes

>>>>>>>>>>>>>>>>>>>>> PLANE 0 <<<<<<<<<<<<<<<<<<<<<<

----------- REGISTRATION

registering 7663 frames

Reference frame, 16.55 sec.

2500/7663 frames, 87.42 sec.

5000/7663 frames, 185.00 sec.

7500/7663 frames, 287.27 sec.

7663/7663 frames, 292.79 sec.

bad frames file path: H:\Sleep\20201029_GCaMP6f_8235_awake\7\bad_frames.npy

----------- Total 309.75 sec

Registration metrics, 102.78 sec.

----------- ROI DETECTION AND EXTRACTION

Binning movie in chunks of length 21

Binned movie [364,496,498], 10.92 sec.

NOTE: estimated spatial scale ~12 pixels, time epochs 1.00, threshold 10.00 

0 ROIs, score=518.68

1000 ROIs, score=24.37

2000 ROIs, score=12.17

Found 2674 ROIs, 83.05 sec

After removing overlaps, 2153 ROIs remain

Masks made in 35.38 sec.

Extracted fluorescence from 2153 ROIs in 7663 frames, 128.78 sec.

NOTE: applying classifier C:\Users\axelf\.suite2p\classifiers\classifier_user.npy

----------- Total 286.58 sec.

WARNING: skipping spike detection (ops['spikedetect']=False)

Plane 0 processed in 700.10 sec (can open in GUI).

total = 390.35 sec.

TOTAL RUNTIME 391.08 sec