# AIDAhisto_Files

Atlas and test images required for [AIDAhisto](https://github.com/aswendtlab/AIDAhisto).

## Files:
**ARA:**
Contains the atlas in 10 um and 50 um resolution in the original, parental (_parent) and (_splitted) version as well as the list of acronyms. The parental version includes less regions (functional regions were summarized according to the Allen ontology, see details in the related [AIDAmri](https://doi.org/10.3389/fninf.2019.00042) publication). The splitted version contains the atlas with different grey values per hemisphere to distinguish left and right side. Original files were obtained from: [Allen Mouse Brain Atlas](https://www.nature.com/articles/nature05453)[ (CCFv3)](http://help.brain-map.org/display/mousebrain/Documentation).

**ARA_SC:**
Contains custom vector files, which were manually drawn from the original [Allen Mouse Spinal Cord Atlas](https://mousespinal.brain-map.org) images (C1-8, T1-2 level). Note! Splitted version available only (with grey values to distinguish left and right side).


**Test_Images/Test_Images_SC:** 
Contains sample images of different staining (GFAP, IBA1) with different resolutions of brain or spinal cord (SC) sections. There is also an already transformed atlas in original version *wholebrainatlas.tif* and split version *wholebrain\atlas\splitted.tif* which is overlaid with the brain slice *wholebrainslice.tif*. The results after the processing are described in detail in the [AIDAhisto manual](https://github.com/aswendtlab/AIDAhisto/AIDAhisto_Manual).


## Authors:
Annika Vohn, Ann-Sophie Benz, Markus Aswendt.


Data made available through the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International Public License.