## Code repository for *Hasegawa & Huang et al.*   
This code can be used to generate main and supplementary figures of Hasegawa, Huang, Paricio-Montesinos & Gründemann (original preprint https://doi.org/10.1101/2023.08.23.554119).  

Data can be downloaded from the data repository https://gin.g-node.org/GrundemannLab/2024_Hasegawa_Huang_et_al_DATA.

Code can be executed in MATLAB2020a (MathWorks).

**Fig1-2 and Fig S1, 3, 4, 6**  
Load data by `load('...\Fig*\*.mat')`.

**Fig3-4, SVM_decoding**  
Laod data by `load('...\Data\Fig3_FigS7-18\*\*.mat')`.

**Supplementary figures S7-S18**  
Figures can be generated with the code from the main figures (see annotations). 

Load helper functions by running `addpath(genpath('...\auxillary'))`;

**Data structure:**  
'DataAll.(Aud1)': Initial auditory-go group  
'DataAll.(Vis1)': Initial visual-go group  
E.g. `DataAll.('Aud1')(n).BHV.Naive{m}.FieldName` (n: n-th mouse; m: m-th session)  

`FieldName`  
`StimStart`: Stimulus start time (s)  
`ICF`: raw calcium trace (sample,cell)  
`LickPulse`: Lick time (s)  
`Trial_Freq`: Auditory stimulus frequency  
`Trial_Grat`: Visual stimulus angle  
`RotaryEncPulse`: Rotary encoder pulse (no direction)