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@@ -40,26 +40,4 @@ Data structure
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## Code
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-The code is available at https://github.com/danionella/veith_et_al_2024/tree/main/figure_3.
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-Two Matlab scripts are used to generate these figures:
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-1. motionDetect_Veith2024.m
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- * loads the data,
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- * reshapes the data set to reconstruct the movie of mechanical tissue deformation in response to acoustic stimulation,
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- * sets particle image velocimetry (PIV) parameters including image pre-processing,
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- * computes local displacement from one frame to the next along x and y directions, using the PIVlab Matlab library ([GitHub - Shrediquette/PIVlab: Particle Image Velocimetry for Matlab, official repository](https://github.com/Shrediquette/PIVlab), tested with version 2.31 - to use 3.0, a few new parameters must be defined, see code).
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-2. phaseMapping_Veith2024.m
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- * loads the motion data (output from previous code)
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- * computes the first Fourier component, and convert to proper unit (velocities in um/s and displacement amplitude in um)
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- * plots the results
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- * compute mean values of displacement amplitude and phase within region of interests
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+The code is available at https://github.com/danionella/veith_et_al_2024/tree/main/figure_3.
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