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jveith há 5 meses atrás
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README.md

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-# The mechanism for directional hearing in fish
+## The mechanism for directional hearing in fish
+- [Here](https://www.nature.com/articles/s41586-024-07507-9) you can find the paper.  
+- [Github](https://github.com/danionella/veith_et_al_2024) is your entry point for code.   
+- Click [here](https://danionella.github.io/veith_et_al_2024/) for an interactive online viewer of hearing apparatus anatomy (also on [MorphoSource](http://n2t.net/ark:/87602/m4/623999))
 
-This repository contains data related to the manuscript "The mechanism for directional hearing in fish" ([paper](https://www.nature.com/articles/s41586-024-07507-9), [github](https://github.com/danionella/veith_et_al_2024)).   
+This repository contains data related to the manuscript:  
 
-## Behavior data
+### Behavior data
 The `behavior` folder contains pickled dataframe objects with fish trajectories around playback events. (5s before playback, 7s after playback, 120fps).
 - `65fish_nolla.zip` Data on 65 female and male adult _Danionella cerebrum_ without lateral line ablation.
 - `74fish_lla.zip` Data on 74 female and male adult _Danionella cerebrum_ after lateral line ablation.
@@ -17,19 +20,19 @@ https://github.com/danionella/veith_et_al_2024/tree/main/figures
 
 The subfolder `sleap_model` contains the fish skeleton, parameters, and the trained model that was used to track a single _Danionella cerebrum_ in a 336 x 336 pixel recording, spanning a ~ 11 x 11cm field of view.
 
-## Micro CT data
+### Micro CT data
 PMA (phosphomolybdic acid)-stained, adult, male _Danionella cerebrum_.
-#### Raw data
+##### Raw data
 `Danionella_cerebrum_PMA_16bit_binned_1p297_oriented_front_1965x1926x3328.raw`  
 When opening file in ImageJ Fiji, choose `16-bit Unsigned` and `Little-endian byte order`. Opening as virtual stack is recommended. The voxel size is 1.29702 µm.
 
-#### Segmentation (DragonFly)
+##### Segmentation (DragonFly)
 `Danionella_cerebrum_PMA_16bit_binned_1p297_oriented_front_1965x1926x3328_cropped_1224x1224x1645_segmentation.ORSSession`  
 Dragonfly (https://www.theobjects.com/dragonfly) project file, which contains raw data cropped around the inner ear (1224x1224x1645, anchor at 369,246,412), handlabelled planes, interpolated binary ROIs (interpolated by biomedisa, https://biomedisa.info/), and meshgrids derived from these binary ROIs.
 
-#### Meshgrids (Blender)
+##### Meshgrids (Blender)
 `Danionella_cerebrum_PMA_16bit_binned_1p297_oriented_front_1965x1926x3328_cropped_1224x1224x1645_meshgrid.blend`  
 This Blender project file contains downsampled meshgrids of segmented inner ear structures and an animation.
 
-## Vibrometry data
+### Vibrometry data
 The `vibrometry` folder contains the reflectance confocal microscope data of auditory structures of two adult male _Danionella cerebrum_ during sound playback. The Matlab code on https://github.com/danionella/veith_et_al_2024/tree/main/figure_3 produces the motion phase maps presented in Fig. 3 and Extended Data Fig. 11 from these data.