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@@ -3,36 +3,5 @@
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- [Github](https://github.com/danionella/veith_et_al_2024) is your entry point for code.
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- Click [here](https://danionella.github.io/veith_et_al_2024/) for an interactive online viewer of hearing apparatus anatomy (also on [MorphoSource](http://n2t.net/ark:/87602/m4/623999))
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-This repository contains data related to the manuscript:
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+This repository contains data related to the manuscript. Please open the folders for more information.
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-### Behavior data
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-The `behavior` folder contains pickled dataframe objects with fish trajectories around playback events. (5s before playback, 7s after playback, 120fps).
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-- `65fish_nolla.zip` Data on 65 female and male adult _Danionella cerebrum_ without lateral line ablation.
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-- `74fish_lla.zip` Data on 74 female and male adult _Danionella cerebrum_ after lateral line ablation.
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-
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-Load like this (in python):
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-```
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-import pandas as pd
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-df = pd.read_pickle('65fish_nolla.zip')
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-```
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-To generate paper figures based on this data, see:
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-https://github.com/danionella/veith_et_al_2024/tree/main/figures
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-
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-The subfolder `sleap_model` contains the fish skeleton, parameters, and the trained model that was used to track a single _Danionella cerebrum_ in a 336 x 336 pixel recording, spanning a ~ 11 x 11cm field of view.
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-
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-### Micro CT data
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-PMA (phosphomolybdic acid)-stained, adult, male _Danionella cerebrum_.
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-##### Raw data
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-`Danionella_cerebrum_PMA_16bit_binned_1p297_oriented_front_1965x1926x3328.raw`
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-When opening file in ImageJ Fiji, choose `16-bit Unsigned` and `Little-endian byte order`. Opening as virtual stack is recommended. The voxel size is 1.29702 µm.
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-
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-##### Segmentation (DragonFly)
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-`Danionella_cerebrum_PMA_16bit_binned_1p297_oriented_front_1965x1926x3328_cropped_1224x1224x1645_segmentation.ORSSession`
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-Dragonfly (https://www.theobjects.com/dragonfly) project file, which contains raw data cropped around the inner ear (1224x1224x1645, anchor at 369,246,412), handlabelled planes, interpolated binary ROIs (interpolated by biomedisa, https://biomedisa.info/), and meshgrids derived from these binary ROIs.
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-
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-##### Meshgrids (Blender)
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-`Danionella_cerebrum_PMA_16bit_binned_1p297_oriented_front_1965x1926x3328_cropped_1224x1224x1645_meshgrid.blend`
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-This Blender project file contains downsampled meshgrids of segmented inner ear structures and an animation.
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-
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-### Vibrometry data
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-The `vibrometry` folder contains the reflectance confocal microscope data of auditory structures of two adult male _Danionella cerebrum_ during sound playback. The Matlab code on https://github.com/danionella/veith_et_al_2024/tree/main/figure_3 produces the motion phase maps presented in Fig. 3 and Extended Data Fig. 11 from these data.
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