Progress Report / Log

Started at Thu 19 Mar 2020 10:39:02 AM CET

Feat main script


/bin/cp /data/project/studyforrest_ppa/sub-19/2nd-lvl_audio-ppa-ind.fsf design.fsf

/usr/share/fsl/5.0/bin/feat_model design

mkdir .files;cp /usr/share/fsl/5.0/doc/fsl.css .files;cp -r /usr/share/fsl/5.0/doc/images .files/images

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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 9449  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_audio-ppa-ind.gfeat/cope13.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_audio-ppa-ind.gfeat/cope13.feat -stop
10490

/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 12208,14728,17248,19753,22303,24847,27370,29945,32552,2829,5373,8095,10490  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-19/2nd-lvl_audio-ppa-ind.gfeat/cope13.feat/design.fsf -D /data/project/studyforrest_ppa/sub-19/2nd-lvl_audio-ppa-ind.gfeat -stop

Higher-level input files preparation

/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_V2onFC -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_JaxKN1 -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_te1Otq -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_daWVxo -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_ihAhby -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_LG7ELI -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_JwkLmS -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_F4PSa5 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_YeaZef -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_NXZQOp -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_qbPsMy -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_NLqPIx -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_DZCdOH -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_dtOUBR -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_Lvhlm1 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_uIwtbe -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_AhQevo -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_iW2OPw -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_hnAkjz -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_O2JVdJ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_s6b6FT -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_r1wCf2 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_M4FdLb -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_nwh4Cm -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_hWVc2v -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_W5BBsx -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_LwfTYG -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_cjLxER -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_Ndz1m3 -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_QnmgGj -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_3jB30E -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_JhRKAU -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_tVhbn5 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_Ofqqef -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_H9pJ5r -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_6XJ1wC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_EurOnK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_LvnWjM -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_HPJyPV -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_jSLhq6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_EoBpbj -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_Mpeeds -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_jX9UYB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_pUoslM -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_rMb36O -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_5yZfkX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_ADFE77 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_GsEYSg -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_yxxEzr -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_w6cbzE -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_YubF6N -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_Bj4dVM -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_zGrJEZ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_JaGyC8 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_DwocRl -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_ZWswkw -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_aDN2xF -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_FnorsS -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_eh0PHV -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_1pCXHk -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_FVNNVJ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_3ec8pS -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_HkgmPV -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_WxSZA5 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_gLJYef -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_EG766o -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_lr5jdx -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_yNEESH -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_eMc2ER -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_omvOD1 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_flGrk4 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_wikJae -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_Keu5Xn -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_OLNJOx -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_DGOWNH -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_MSdAWP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_wLnEH0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_lpZOr3 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_m93i8c -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_py1RLm -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_hB9pav -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_PPSCPF -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_TVSLoP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_ZqBDs2 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_FT2P2b -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_Svfuza -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_2C7Xum -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_cOvacD -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_39CNIY -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_lQRmad -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_XNkfxl -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_rNAzQw -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_TxgWOG -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_WEaMSQ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_f579H0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_QFcyza -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_tA8BKj -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_nKJ2Jh -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_Ob2msr -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_OYsBnC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_OOfhQO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_tnc8EZ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_aX6Wj9 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_jdb6Fh -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_sNKhok -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_9Nyzau -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_3P6AaE -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_LcPGTN -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_bdPOAY -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_h2Ppd8 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_xyPvXh -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_8y4Fkq -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_wvrhPs -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_kq3OwD -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_BUqrkN -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_1hETSV -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_KHHGPa -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_Mi8c1n -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_AMbcHO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_QlftDX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_zvNsI6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_zVxpWg -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_WLV4St -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_XKQS4r -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_bL7sJB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_AK6sfM -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_1HiBWY -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_wY7Qp9 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_SysIWh -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_4SbSis -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_ZrvWdF -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_o9fzYD -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_6zkyIQ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_bZ46F0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_BPRaia -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_oBgfLk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_9huaPu -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_gdORuE -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_mqsFyF -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_ikDUdQ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_MwjCmY -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_VYz6L9 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_yJGcgi -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_rPGEIs -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_MuaF5E -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_lnXWNL -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_NiWzT7 -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_BeU8Du -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_LRiCQC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_NrIUKM -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_Kb5PqQ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_UavL8Z -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_9v88o9 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_CIsA6i -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_3fplQt -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_hSxK2B -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_Oi0HxP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_wSoIBN -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_d8rRrX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_3QHuh7 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_t8gjch -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_kYKOKr -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_q7DA9E -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_PsW4UO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_WvkxuY -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_OpCxIW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_Gk8NN9 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_Dkoaoj -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_NLL85t -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_9ujRTD -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_gF39qN -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_g0BONV -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_4OHtiZ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_MLdV5a -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_uLPjQp -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_BIEDCM -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_ZVXkNY -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_p18hlc -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_d2sqTm -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_mayS0u -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_iNyKbF -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_JzICeP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_lqlEh2 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_zuB8C1 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_fbNOP9 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_tfHelk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_DMZm0w -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_9PsJdG -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_9Z7HDQ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_VGT9u3 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_Bq816c -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_qMpwYa -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_4Ndsyl -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_yTFNIy -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_awrudJ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_XcO2kR -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_znDVM1 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_Vgp43e -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_NYTEgg -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_3FJrRq -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_svw6xA -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_YEma6J -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_Tb6JgW -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_IfJAN7 -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_ke7U6l -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_z9zqsK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_sq6IlX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_GFDl46 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_OmdSsj -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_4Vlrhi -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_ezAt1r -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_9NCS7E -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_FgQ8PO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_hRBunZ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_UJxPE7 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_94t9hh -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_HCoWWk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_ZCgnru -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_AkAkPC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_f4ICpM -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_km00g0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_CJ8gNa -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_A7CxPi -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_zxIOat -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_MWUnbu -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_hsEnFE -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_Sh5xkO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_LVaMk1 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_0mT9Vb -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_pKASEl -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_tR9Z2t -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_BDhEev -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg/standard bg_image

/usr/share/fsl/5.0/bin/fslmerge -t mask  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/mask

mkdir -p inputreg

/usr/share/fsl/5.0/bin/fslmaths ../mask -mul 8 -Tmean masksum -odt short

/usr/share/fsl/5.0/bin/fslmaths masksum -thr 8 -add masksum masksum

/usr/share/fsl/5.0/bin/overlay 0 0 -c ../bg_image -a masksum 0.9 16 masksum_overlay

/usr/share/fsl/5.0/bin/slicer masksum_overlay -S 2 750 masksum_overlay.png

/usr/share/fsl/5.0/bin/fslmaths masksum -mul 0 maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 1 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 2 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 3 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 4 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 5 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 6 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 7 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 8 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths masksum -thr 7 -uthr 7 -bin -mul maskunique maskunique

/usr/share/fsl/5.0/bin/overlay 0 0 ../bg_image -a maskunique 0.9 8 maskunique_overlay

/usr/share/fsl/5.0/bin/slicer maskunique_overlay -S 2 750 maskunique_overlay.png

/bin/cp /usr/share/fsl/5.0/etc/luts/ramp.gif .ramp.gif

/usr/share/fsl/5.0/bin/fslmaths mask -Tmin mask

/usr/share/fsl/5.0/bin/fslmerge -t mean_func  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/mean_func

/usr/share/fsl/5.0/bin/fslmaths mean_func -Tmean mean_func

/usr/share/fsl/5.0/bin/fslmerge -t cope1  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/cope1

/usr/share/fsl/5.0/bin/fslmaths cope1 -mas mask cope1

printf '0.03687855500000001 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope1  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope1

/usr/share/fsl/5.0/bin/fslmaths varcope1 -mas mask varcope1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t1  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths tdof_t1 -mas mask tdof_t1

/usr/share/fsl/5.0/bin/fslmerge -t cope2  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/cope2

/usr/share/fsl/5.0/bin/fslmaths cope2 -mas mask cope2

printf '0.03841054875 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope2  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope2

/usr/share/fsl/5.0/bin/fslmaths varcope2 -mas mask varcope2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t2  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths tdof_t2 -mas mask tdof_t2

/usr/share/fsl/5.0/bin/fslmerge -t cope3  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/cope3

/usr/share/fsl/5.0/bin/fslmaths cope3 -mas mask cope3

printf '0.017135111249999998 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope3  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope3

/usr/share/fsl/5.0/bin/fslmaths varcope3 -mas mask varcope3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t3  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths tdof_t3 -mas mask tdof_t3

/usr/share/fsl/5.0/bin/fslmerge -t cope4  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/cope4

/usr/share/fsl/5.0/bin/fslmaths cope4 -mas mask cope4

printf '0.03572097875 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope4  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope4

/usr/share/fsl/5.0/bin/fslmaths varcope4 -mas mask varcope4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t4  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths tdof_t4 -mas mask tdof_t4

/usr/share/fsl/5.0/bin/fslmerge -t cope5  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/cope5

/usr/share/fsl/5.0/bin/fslmaths cope5 -mas mask cope5

printf '0.02999571125 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope5  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope5

/usr/share/fsl/5.0/bin/fslmaths varcope5 -mas mask varcope5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t5  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths tdof_t5 -mas mask tdof_t5

/usr/share/fsl/5.0/bin/fslmerge -t cope6  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/cope6

/usr/share/fsl/5.0/bin/fslmaths cope6 -mas mask cope6

printf '0.02961623 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope6  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope6

/usr/share/fsl/5.0/bin/fslmaths varcope6 -mas mask varcope6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t6  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths tdof_t6 -mas mask tdof_t6

/usr/share/fsl/5.0/bin/fslmerge -t cope7  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/cope7

/usr/share/fsl/5.0/bin/fslmaths cope7 -mas mask cope7

printf '0.024367604999999997 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope7  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope7

/usr/share/fsl/5.0/bin/fslmaths varcope7 -mas mask varcope7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t7  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths tdof_t7 -mas mask tdof_t7

/usr/share/fsl/5.0/bin/fslmerge -t cope8  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/cope8

/usr/share/fsl/5.0/bin/fslmaths cope8 -mas mask cope8

printf '0.08703577625 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope8  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope8

/usr/share/fsl/5.0/bin/fslmaths varcope8 -mas mask varcope8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t8  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths tdof_t8 -mas mask tdof_t8

/usr/share/fsl/5.0/bin/fslmerge -t cope9  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/cope9

/usr/share/fsl/5.0/bin/fslmaths cope9 -mas mask cope9

printf '0.06059554625 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope9  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope9

/usr/share/fsl/5.0/bin/fslmaths varcope9 -mas mask varcope9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t9  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths tdof_t9 -mas mask tdof_t9

/usr/share/fsl/5.0/bin/fslmerge -t cope10  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/cope10

/usr/share/fsl/5.0/bin/fslmaths cope10 -mas mask cope10

printf '0.038793088749999996 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope10  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope10

/usr/share/fsl/5.0/bin/fslmaths varcope10 -mas mask varcope10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t10  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths tdof_t10 -mas mask tdof_t10

/usr/share/fsl/5.0/bin/fslmerge -t cope11  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/cope11

/usr/share/fsl/5.0/bin/fslmaths cope11 -mas mask cope11

printf '0.04675738375 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope11  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope11

/usr/share/fsl/5.0/bin/fslmaths varcope11 -mas mask varcope11

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t11  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmaths tdof_t11 -mas mask tdof_t11

/usr/share/fsl/5.0/bin/fslmerge -t cope12  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/cope12

/usr/share/fsl/5.0/bin/fslmaths cope12 -mas mask cope12

printf '0.0298116475 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope12  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope12

/usr/share/fsl/5.0/bin/fslmaths varcope12 -mas mask varcope12

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t12  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmaths tdof_t12 -mas mask tdof_t12

/usr/share/fsl/5.0/bin/fslmerge -t cope13  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/cope13

/usr/share/fsl/5.0/bin/fslmaths cope13 -mas mask cope13

printf '0.04172281375 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope13  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope13

/usr/share/fsl/5.0/bin/fslmaths varcope13 -mas mask varcope13

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t13  /data/project/studyforrest_ppa/sub-19/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-19/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-19/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-19/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-19/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-19/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-19/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-19/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmaths tdof_t13 -mas mask tdof_t13