Feat main script
/bin/cp /data/project/studyforrest_ppa/sub-18/run-5_1st_movie-ppa-grp.fsf design.fsf
/usr/share/fsl/5.0/bin/feat_model design
Warning: at least one EV is (close to) a linear combination of the others. You probably need to alter your design.
(Design matrix is rank deficient - ratio of min:max eigenvalues in SVD of matrix is 1.96541e-17)
Contrasts involving these combinations will be set to zero.
mkdir .files;cp /usr/share/fsl/5.0/doc/fsl.css .files;cp -r /usr/share/fsl/5.0/doc/images .files/images
/usr/share/fsl/5.0/bin/fsl_sub -T 10 -l logs -N feat0_init /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-18/run-5_movie-ppa-grp.feat/design.fsf -D /data/project/studyforrest_ppa/sub-18/run-5_movie-ppa-grp.feat -I 1 -init
18981
/usr/share/fsl/5.0/bin/fsl_sub -T 111 -l logs -N feat2_pre -j 18981 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-18/run-5_movie-ppa-grp.feat/design.fsf -D /data/project/studyforrest_ppa/sub-18/run-5_movie-ppa-grp.feat -I 1 -prestats
20009
/usr/share/fsl/5.0/bin/fsl_sub -T 211 -l logs -N feat3_film -j 20009 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-18/run-5_movie-ppa-grp.feat/design.fsf -D /data/project/studyforrest_ppa/sub-18/run-5_movie-ppa-grp.feat -I 1 -stats
27503
/usr/share/fsl/5.0/bin/fsl_sub -T 119 -l logs -N feat4_post -j 27503 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-18/run-5_movie-ppa-grp.feat/design.fsf -D /data/project/studyforrest_ppa/sub-18/run-5_movie-ppa-grp.feat -poststats 0
couldn't open "tmpreport_poststats.html": no such file or directory
while executing
"if { [ catch {
for { set argindex 1 } { $argindex < $argc } { incr argindex 1 } {
switch -- [ lindex $argv $argindex ] {
-I {
incr arginde..."
(file "/usr/share/fsl/5.0/bin/feat" line 309)
FATAL ERROR ENCOUNTERED:
COMMAND:
/usr/share/fsl/5.0/bin/fsl_sub -T 119 -l logs -N feat4_post -j 27503 /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-18/run-5_movie-ppa-grp.feat/design.fsf -D /data/project/studyforrest_ppa/sub-18/run-5_movie-ppa-grp.feat -poststats 0
ERROR MESSAGE:
child process exited abnormally
END OF ERROR MESSAGE
/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/inputs/studyforrest-data-aligned/sub-18/in_bold3Tp2/sub-18_task-avmovie_run-5_bold prefiltered_func_data -odt float Total original volumes = 462 /usr/share/fsl/5.0/bin/fslroi prefiltered_func_data example_func 231 1
/usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data -Tmean mean_func /usr/share/fsl/5.0/bin/bet2 mean_func mask -f 0.3 -n -m; /usr/share/fsl/5.0/bin/immv mask_mask mask /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data -mas mask prefiltered_func_data_bet /usr/share/fsl/5.0/bin/fslstats prefiltered_func_data_bet -p 2 -p 98 0.000000 471.000000 /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_bet -thr 47.1 -Tmin -bin mask -odt char /usr/share/fsl/5.0/bin/fslstats prefiltered_func_data -k mask -p 50 368.000000 /usr/share/fsl/5.0/bin/fslmaths mask -dilF mask /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data -mas mask prefiltered_func_data_thresh /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_thresh -Tmean mean_func /usr/share/fsl/5.0/bin/susan prefiltered_func_data_thresh 276.0 1.6985138004246285 3 1 1 mean_func 276.0 prefiltered_func_data_smooth /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_smooth -mas mask prefiltered_func_data_smooth /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_smooth -mul 27.17391304347826 prefiltered_func_data_intnorm /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_intnorm -Tmean tempMean /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_intnorm -bptf 37.49998125000937 -1 -add tempMean prefiltered_func_data_tempfilt /usr/share/fsl/5.0/bin/imrm tempMean /usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_tempfilt filtered_func_data /usr/share/fsl/5.0/bin/fslmaths filtered_func_data -Tmean mean_func /bin/rm -rf prefiltered_func_data*
mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-18/onsets/avmovie/run-5/vse_new.txt custom_timing_files/ev1.txt mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-18/onsets/avmovie/run-5/vse_old.txt custom_timing_files/ev2.txt mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-18/onsets/avmovie/run-5/vpe_new.txt custom_timing_files/ev4.txt mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-18/onsets/avmovie/run-5/vpe_old.txt custom_timing_files/ev5.txt mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-18/onsets/avmovie/run-5/vno_cut.txt custom_timing_files/ev6.txt mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-18/onsets/aomovie/run-5/se_new.txt custom_timing_files/ev7.txt mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-18/onsets/aomovie/run-5/se_old.txt custom_timing_files/ev8.txt mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-18/onsets/avmovie/run-5/fg_av_ger_lr.txt custom_timing_files/ev9.txt mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-18/onsets/avmovie/run-5/fg_av_ger_lrdiff.txt custom_timing_files/ev10.txt mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-18/onsets/avmovie/run-5/fg_av_ger_ml.txt custom_timing_files/ev11.txt mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-18/onsets/avmovie/run-5/fg_av_ger_pd.txt custom_timing_files/ev12.txt mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-18/onsets/avmovie/run-5/fg_av_ger_rms.txt custom_timing_files/ev13.txt mkdir -p custom_timing_files ; /usr/share/fsl/5.0/bin/fslFixText /data/project/studyforrest_ppa/sub-18/onsets/avmovie/run-5/fg_av_ger_ud.txt custom_timing_files/ev14.txt paste -d ' ' /data/project/studyforrest_ppa/inputs/studyforrest-data-aligned/sub-18/in_bold3Tp2/sub-18_task-avmovie_run-5_bold_mcparams.txt > confoundevs.txt /usr/share/fsl/5.0/bin/feat_model design confoundevs.txt Warning: at least one EV is (close to) a linear combination of the others. You probably need to alter your design. (Design matrix is rank deficient - ratio of min:max eigenvalues in SVD of matrix is 1.89113e-17) Contrasts involving these combinations will be set to zero. /usr/share/fsl/5.0/bin/film_gls --in=filtered_func_data --rn=stats --pd=design.mat --thr=1000.0 --sa --ms=5 --con=design.con Log directory is: stats paradigm.getDesignMatrix().Nrows()=462 paradigm.getDesignMatrix().Ncols()=34 sizeTS=462 numTS=97600 Calculating residuals... Completed Estimating residual autocorrelation... Calculating raw AutoCorrs... Completed mode = 10177.8 sig = 951 Spatially smoothing auto corr estimates .................... Completed Tukey M = 21 Tukey estimates... Completed Completed Prewhitening and Computing PEs... Percentage done: 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,Completed Saving results... Completed /usr/share/fsl/5.0/bin/smoothest -d 428 -m mask -r stats/res4d > stats/smoothness
/usr/share/fsl/5.0/bin/fslmaths stats/zstat1 -mas mask thresh_zstat1
echo 97600 > thresh_zstat1.vol
zstat1: DLH=0.245552 VOLUME=97600 RESELS=18.8119
/usr/share/fsl/5.0/bin/fslmaths stats/zstat2 -mas mask thresh_zstat2
echo 97600 > thresh_zstat2.vol
zstat2: DLH=0.245552 VOLUME=97600 RESELS=18.8119
/usr/share/fsl/5.0/bin/fslmaths stats/zstat3 -mas mask thresh_zstat3
echo 97600 > thresh_zstat3.vol
zstat3: DLH=0.245552 VOLUME=97600 RESELS=18.8119
/usr/share/fsl/5.0/bin/fslmaths stats/zstat4 -mas mask thresh_zstat4
echo 97600 > thresh_zstat4.vol
zstat4: DLH=0.245552 VOLUME=97600 RESELS=18.8119
/usr/share/fsl/5.0/bin/fslmaths stats/zstat5 -mas mask thresh_zstat5
echo 97600 > thresh_zstat5.vol
zstat5: DLH=0.245552 VOLUME=97600 RESELS=18.8119
/usr/share/fsl/5.0/bin/fslmaths stats/zstat6 -mas mask thresh_zstat6
echo 97600 > thresh_zstat6.vol
zstat6: DLH=0.245552 VOLUME=97600 RESELS=18.8119
/usr/share/fsl/5.0/bin/fslmaths stats/zstat7 -mas mask thresh_zstat7
echo 97600 > thresh_zstat7.vol
zstat7: DLH=0.245552 VOLUME=97600 RESELS=18.8119
/usr/share/fsl/5.0/bin/fslmaths stats/zstat8 -mas mask thresh_zstat8
echo 97600 > thresh_zstat8.vol
zstat8: DLH=0.245552 VOLUME=97600 RESELS=18.8119
/usr/share/fsl/5.0/bin/fslmaths stats/zstat9 -mas mask thresh_zstat9
echo 97600 > thresh_zstat9.vol
zstat9: DLH=0.245552 VOLUME=97600 RESELS=18.8119
/usr/share/fsl/5.0/bin/fslmaths stats/zstat10 -mas mask thresh_zstat10
echo 97600 > thresh_zstat10.vol
zstat10: DLH=0.245552 VOLUME=97600 RESELS=18.8119
/usr/share/fsl/5.0/bin/cluster -i thresh_zstat1 -c stats/cope1 -t 3.4 -p 0.05 -d 0.245552 --volume=97600 --othresh=thresh_zstat1 -o cluster_mask_zstat1 --connectivity=26 --olmax=lmax_zstat1.txt --scalarname=Z > cluster_zstat1.txt
/usr/share/fsl/5.0/bin/cluster2html . cluster_zstat1
/usr/share/fsl/5.0/bin/cluster -i thresh_zstat2 -c stats/cope2 -t 3.4 -p 0.05 -d 0.245552 --volume=97600 --othresh=thresh_zstat2 -o cluster_mask_zstat2 --connectivity=26 --olmax=lmax_zstat2.txt --scalarname=Z > cluster_zstat2.txt
/usr/share/fsl/5.0/bin/cluster2html . cluster_zstat2
/usr/share/fsl/5.0/bin/cluster -i thresh_zstat3 -c stats/cope3 -t 3.4 -p 0.05 -d 0.245552 --volume=97600 --othresh=thresh_zstat3 -o cluster_mask_zstat3 --connectivity=26 --olmax=lmax_zstat3.txt --scalarname=Z > cluster_zstat3.txt
/usr/share/fsl/5.0/bin/cluster2html . cluster_zstat3
/usr/share/fsl/5.0/bin/cluster -i thresh_zstat4 -c stats/cope4 -t 3.4 -p 0.05 -d 0.245552 --volume=97600 --othresh=thresh_zstat4 -o cluster_mask_zstat4 --connectivity=26 --olmax=lmax_zstat4.txt --scalarname=Z > cluster_zstat4.txt
/usr/share/fsl/5.0/bin/cluster2html . cluster_zstat4
/usr/share/fsl/5.0/bin/cluster -i thresh_zstat5 -c stats/cope5 -t 3.4 -p 0.05 -d 0.245552 --volume=97600 --othresh=thresh_zstat5 -o cluster_mask_zstat5 --connectivity=26 --olmax=lmax_zstat5.txt --scalarname=Z > cluster_zstat5.txt
/usr/share/fsl/5.0/bin/cluster2html . cluster_zstat5
/usr/share/fsl/5.0/bin/cluster -i thresh_zstat6 -c stats/cope6 -t 3.4 -p 0.05 -d 0.245552 --volume=97600 --othresh=thresh_zstat6 -o cluster_mask_zstat6 --connectivity=26 --olmax=lmax_zstat6.txt --scalarname=Z > cluster_zstat6.txt
/usr/share/fsl/5.0/bin/cluster2html . cluster_zstat6
/usr/share/fsl/5.0/bin/cluster -i thresh_zstat7 -c stats/cope7 -t 3.4 -p 0.05 -d 0.245552 --volume=97600 --othresh=thresh_zstat7 -o cluster_mask_zstat7 --connectivity=26 --olmax=lmax_zstat7.txt --scalarname=Z > cluster_zstat7.txt
/usr/share/fsl/5.0/bin/cluster2html . cluster_zstat7
/usr/share/fsl/5.0/bin/cluster -i thresh_zstat8 -c stats/cope8 -t 3.4 -p 0.05 -d 0.245552 --volume=97600 --othresh=thresh_zstat8 -o cluster_mask_zstat8 --connectivity=26 --olmax=lmax_zstat8.txt --scalarname=Z > cluster_zstat8.txt
/usr/share/fsl/5.0/bin/cluster2html . cluster_zstat8
/usr/share/fsl/5.0/bin/cluster -i thresh_zstat9 -c stats/cope9 -t 3.4 -p 0.05 -d 0.245552 --volume=97600 --othresh=thresh_zstat9 -o cluster_mask_zstat9 --connectivity=26 --olmax=lmax_zstat9.txt --scalarname=Z > cluster_zstat9.txt
/usr/share/fsl/5.0/bin/cluster2html . cluster_zstat9
/usr/share/fsl/5.0/bin/cluster -i thresh_zstat10 -c stats/cope10 -t 3.4 -p 0.05 -d 0.245552 --volume=97600 --othresh=thresh_zstat10 -o cluster_mask_zstat10 --connectivity=26 --olmax=lmax_zstat10.txt --scalarname=Z > cluster_zstat10.txt
/usr/share/fsl/5.0/bin/cluster2html . cluster_zstat10
/usr/share/fsl/5.0/bin/fslstats thresh_zstat1 -l 0.0001 -R 2>/dev/null
3.401447 4.449197
/usr/share/fsl/5.0/bin/fslstats thresh_zstat2 -l 0.0001 -R 2>/dev/null
3.400339 4.822146
/usr/share/fsl/5.0/bin/fslstats thresh_zstat3 -l 0.0001 -R 2>/dev/null
3.403844 3.852815
/usr/share/fsl/5.0/bin/fslstats thresh_zstat4 -l 0.0001 -R 2>/dev/null
3.402735 5.217531
/usr/share/fsl/5.0/bin/fslstats thresh_zstat5 -l 0.0001 -R 2>/dev/null
0.000000 0.000000
/usr/share/fsl/5.0/bin/fslstats thresh_zstat6 -l 0.0001 -R 2>/dev/null
0.000000 0.000000
/usr/share/fsl/5.0/bin/fslstats thresh_zstat7 -l 0.0001 -R 2>/dev/null
3.403521 5.405951
/usr/share/fsl/5.0/bin/fslstats thresh_zstat8 -l 0.0001 -R 2>/dev/null
3.409250 5.253582
/usr/share/fsl/5.0/bin/fslstats thresh_zstat9 -l 0.0001 -R 2>/dev/null
3.407098 4.318953
/usr/share/fsl/5.0/bin/fslstats thresh_zstat10 -l 0.0001 -R 2>/dev/null
3.403963 5.395765
Rendering using zmin=3.400339 zmax=5.405951
couldn't open "tmpreport_poststats.html": no such file or directory
while executing
"if { [ catch {
for { set argindex 1 } { $argindex < $argc } { incr argindex 1 } {
switch -- [ lindex $argv $argindex ] {
-I {
incr arginde..."
(file "/usr/share/fsl/5.0/bin/feat" line 309)
Error encountered while running in main feat script, halting.
couldn't open "tmpreport_poststats.html": no such file or directory