Progress Report / Log

Started at Thu 19 Mar 2020 10:39:03 AM CET

Feat main script


/bin/cp /data/project/studyforrest_ppa/sub-17/2nd-lvl_audio-ppa-ind.fsf design.fsf

/usr/share/fsl/5.0/bin/feat_model design

mkdir .files;cp /usr/share/fsl/5.0/doc/fsl.css .files;cp -r /usr/share/fsl/5.0/doc/images .files/images

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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 13753  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-17/2nd-lvl_audio-ppa-ind.gfeat/cope13.feat/design.fsf -D /data/project/studyforrest_ppa/sub-17/2nd-lvl_audio-ppa-ind.gfeat/cope13.feat -stop
18753

/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 4118,19072,1663,16663,31269,13403,27538,9583,24563,7272,21922,3975,18753  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-17/2nd-lvl_audio-ppa-ind.gfeat/cope13.feat/design.fsf -D /data/project/studyforrest_ppa/sub-17/2nd-lvl_audio-ppa-ind.gfeat -stop

Higher-level input files preparation

/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_0o2PbP -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_pMEFb6 -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_9fGu3A -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_0RUYDN -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_VNRJgY -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_23B4qe -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_KuqJfi -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_FpyRwt -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_ZMg5xF -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_4xoNNR -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_XCr3X4 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_U9f1dk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_iFEUim -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_mUU60w -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_5rHKHM -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_h1SxmZ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_PmAuO8 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_GKh9Tn -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_ob08uo -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_HTHUyB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_QJF23N -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_54nBj0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_SyuvGc -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_8R9dJo -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_PT0w1t -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_hdBFAG -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_WvjaPQ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_kEOY72 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_J8x1fg -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_d9Yf7x -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_mt8iuO -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_kGgX1e -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_UjTPus -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_zkeLms -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_v4fEWE -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_VUl3dR -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_he4Yh5 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_wXpmSd -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_qAuWpq -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_9wo1TC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_bVtCGG -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_LygfTW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_AwOzk8 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_aV6YAk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_tr5uWw -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_LNwhhJ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_WayktL -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_1UMnlX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_UBtJD9 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_iSAMSk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_W6cS0w -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_AJnNPJ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_8mk41K -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_HBpQfY -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_riguua -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_LRBHJm -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_vMUadC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_iPL9cN -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_2j3OET -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_795Amj -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_zg6haK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_BlczGO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_cZbta0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_GIUoid -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_rDoPBs -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_jSqTXB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_981Y0O -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_xBpIYS -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_fsAfe1 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_NbGtXd -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_TdcLZp -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_VlC5jD -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_MngnjP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_l4uYkT -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_1gBnf5 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_boxljj -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_fAUeCu -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_n5LwVG -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_ldwgKW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_1Y187W -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_Vx0eQ9 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_Kbs4El -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_TP62Dz -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_MK4h1K -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_vzZEqX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_GSIUD9 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_QpOXSd -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_e4yqJr -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_DFYovV -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_CidWCi -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_oaR40s -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_QFP48F -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_jJUzWO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_uCb8h5 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_OFb9Ee -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_29sdTi -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_tJTsjv -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_rsjj9H -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_hNY61S -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_wGAbc6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_qEg5ki -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_YZJtFn -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_SyPEIz -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_wiOWnL -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_N6XelY -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_Xrbz3a -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_nhqhZm -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_FwT5Cq -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_whOlQB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_bg9HYN -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_OEqiU4 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_bFJWjg -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_bhtKYs -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_TtNZWt -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_LyM94F -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_4W4EoV -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_F9QhV9 -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_TqBKUp -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_Aox7LT -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_l4jSq9 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_uSmwwi -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_OcyGXx -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_YPcecA -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_PF2FAM -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_3CVAFY -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_bsyUib -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_oZ1NFn -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_eRltTx -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_zAEVzz -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_20JUSL -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_oDtaZZ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_Z1DfZa -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_50I0Ym -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_ZinYRA -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_hSLBCE -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_w4oEZQ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_bz3cf3 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_4cuIwe -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_7XzItr -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_4X2aNG -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_WYWZ4G -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_1AYEnU -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_5SRON5 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_G9pP8j -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_8Eumvv -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_NXE2aN -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_LNUDh6 -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_IDLHVv -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_yQEL0L -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_RAzaBN -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_XXQm7V -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_axwNX8 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_RL05hl -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_xSNyHA -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_BUA2mK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_vKq4EP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_h6TmE1 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_XZj5le -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_iTqSJp -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_YSIhLC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_urz37M -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_p7eXoR -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_nQA3C3 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_Nz301f -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_t7FL0t -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_Zj5wxG -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_WRhcaR -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_yYj6wW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_fM7Bx8 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_SfNUPl -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_wbI7Lx -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_HhxmsI -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_x16iGV -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_NqyISY -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_g6Ayji -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_c5ZVRE -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_dAYrR8 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_U65OY9 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_QSs1an -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_hpSbFC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_cjsc3O -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_uDwDW0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_1VKHYd -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_TXBZue -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_jWge3t -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_pzOX2G -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_QvlamR -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_WLcvi8 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_2z43rk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_3r0FWk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_bPQsjA -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_2hovuL -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_HH60NX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_rkrUOa -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_IwCF0n -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_ns4UCr -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_HUB14D -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_6rA26P -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_ZYw7G2 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_RfPxsb -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_F42uAn -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_MidJTp -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_50apnE -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_I3bQBW -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_lKFP6j -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_IKdF7A -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_tVNfFO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_JZW58Z -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_XuJBD9 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_ZPz18n -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_279I9s -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_7VzaHF -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_hglHPO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_2eMBn1 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_g0PBug -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_3KejAp -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_xy28dv -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_WxN6gH -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_x5MRzT -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_Rwj7W4 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_akJNvh -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_8peLJw -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_7en5Yw -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_QgrH5K -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_skPVIW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_RiyDg8 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_VVh02l -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_ETRhEx -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_yk988G -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_kK2jJM -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_5ftyiX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_kVcMzd -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg/standard bg_image

/usr/share/fsl/5.0/bin/fslmerge -t mask  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/mask

mkdir -p inputreg

/usr/share/fsl/5.0/bin/fslmaths ../mask -mul 8 -Tmean masksum -odt short

/usr/share/fsl/5.0/bin/fslmaths masksum -thr 8 -add masksum masksum

/usr/share/fsl/5.0/bin/overlay 0 0 -c ../bg_image -a masksum 0.9 16 masksum_overlay

/usr/share/fsl/5.0/bin/slicer masksum_overlay -S 2 750 masksum_overlay.png

/usr/share/fsl/5.0/bin/fslmaths masksum -mul 0 maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 1 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 2 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 3 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 4 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 5 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 6 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 7 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 8 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths masksum -thr 7 -uthr 7 -bin -mul maskunique maskunique

/usr/share/fsl/5.0/bin/overlay 0 0 ../bg_image -a maskunique 0.9 8 maskunique_overlay

/usr/share/fsl/5.0/bin/slicer maskunique_overlay -S 2 750 maskunique_overlay.png

/bin/cp /usr/share/fsl/5.0/etc/luts/ramp.gif .ramp.gif

/usr/share/fsl/5.0/bin/fslmaths mask -Tmin mask

/usr/share/fsl/5.0/bin/fslmerge -t mean_func  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/mean_func

/usr/share/fsl/5.0/bin/fslmaths mean_func -Tmean mean_func

/usr/share/fsl/5.0/bin/fslmerge -t cope1  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/cope1

/usr/share/fsl/5.0/bin/fslmaths cope1 -mas mask cope1

printf '0.03681741125 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope1  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope1

/usr/share/fsl/5.0/bin/fslmaths varcope1 -mas mask varcope1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t1  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths tdof_t1 -mas mask tdof_t1

/usr/share/fsl/5.0/bin/fslmerge -t cope2  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/cope2

/usr/share/fsl/5.0/bin/fslmaths cope2 -mas mask cope2

printf '0.0380230275 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope2  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope2

/usr/share/fsl/5.0/bin/fslmaths varcope2 -mas mask varcope2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t2  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths tdof_t2 -mas mask tdof_t2

/usr/share/fsl/5.0/bin/fslmerge -t cope3  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/cope3

/usr/share/fsl/5.0/bin/fslmaths cope3 -mas mask cope3

printf '0.01722012 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope3  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope3

/usr/share/fsl/5.0/bin/fslmaths varcope3 -mas mask varcope3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t3  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths tdof_t3 -mas mask tdof_t3

/usr/share/fsl/5.0/bin/fslmerge -t cope4  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/cope4

/usr/share/fsl/5.0/bin/fslmaths cope4 -mas mask cope4

printf '0.0356018275 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope4  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope4

/usr/share/fsl/5.0/bin/fslmaths varcope4 -mas mask varcope4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t4  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths tdof_t4 -mas mask tdof_t4

/usr/share/fsl/5.0/bin/fslmerge -t cope5  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/cope5

/usr/share/fsl/5.0/bin/fslmaths cope5 -mas mask cope5

printf '0.03013137 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope5  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope5

/usr/share/fsl/5.0/bin/fslmaths varcope5 -mas mask varcope5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t5  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths tdof_t5 -mas mask tdof_t5

/usr/share/fsl/5.0/bin/fslmerge -t cope6  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/cope6

/usr/share/fsl/5.0/bin/fslmaths cope6 -mas mask cope6

printf '0.029549890000000002 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope6  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope6

/usr/share/fsl/5.0/bin/fslmaths varcope6 -mas mask varcope6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t6  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths tdof_t6 -mas mask tdof_t6

/usr/share/fsl/5.0/bin/fslmerge -t cope7  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/cope7

/usr/share/fsl/5.0/bin/fslmaths cope7 -mas mask cope7

printf '0.02432040625 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope7  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope7

/usr/share/fsl/5.0/bin/fslmaths varcope7 -mas mask varcope7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t7  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths tdof_t7 -mas mask tdof_t7

/usr/share/fsl/5.0/bin/fslmerge -t cope8  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/cope8

/usr/share/fsl/5.0/bin/fslmaths cope8 -mas mask cope8

printf '0.08817799999999999 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope8  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope8

/usr/share/fsl/5.0/bin/fslmaths varcope8 -mas mask varcope8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t8  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths tdof_t8 -mas mask tdof_t8

/usr/share/fsl/5.0/bin/fslmerge -t cope9  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/cope9

/usr/share/fsl/5.0/bin/fslmaths cope9 -mas mask cope9

printf '0.060387566250000003 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope9  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope9

/usr/share/fsl/5.0/bin/fslmaths varcope9 -mas mask varcope9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t9  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths tdof_t9 -mas mask tdof_t9

/usr/share/fsl/5.0/bin/fslmerge -t cope10  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/cope10

/usr/share/fsl/5.0/bin/fslmaths cope10 -mas mask cope10

printf '0.0395131725 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope10  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope10

/usr/share/fsl/5.0/bin/fslmaths varcope10 -mas mask varcope10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t10  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths tdof_t10 -mas mask tdof_t10

/usr/share/fsl/5.0/bin/fslmerge -t cope11  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/cope11

/usr/share/fsl/5.0/bin/fslmaths cope11 -mas mask cope11

printf '0.04660217875 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope11  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope11

/usr/share/fsl/5.0/bin/fslmaths varcope11 -mas mask varcope11

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t11  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmaths tdof_t11 -mas mask tdof_t11

/usr/share/fsl/5.0/bin/fslmerge -t cope12  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/cope12

/usr/share/fsl/5.0/bin/fslmaths cope12 -mas mask cope12

printf '0.02965388875 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope12  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope12

/usr/share/fsl/5.0/bin/fslmaths varcope12 -mas mask varcope12

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t12  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmaths tdof_t12 -mas mask tdof_t12

/usr/share/fsl/5.0/bin/fslmerge -t cope13  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/cope13

/usr/share/fsl/5.0/bin/fslmaths cope13 -mas mask cope13

printf '0.04368902625 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope13  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope13

/usr/share/fsl/5.0/bin/fslmaths varcope13 -mas mask varcope13

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t13  /data/project/studyforrest_ppa/sub-17/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-17/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-17/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-17/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-17/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-17/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-17/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-17/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmaths tdof_t13 -mas mask tdof_t13