Preprocessing:Stage 1
Preprocessing:Stage 2
/usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data -Tmean mean_func
/usr/share/fsl/5.0/bin/bet2 mean_func mask -f 0.3 -n -m; /usr/share/fsl/5.0/bin/immv mask_mask mask
/usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data -mas mask prefiltered_func_data_bet
/usr/share/fsl/5.0/bin/fslstats prefiltered_func_data_bet -p 2 -p 98
0.000000 457.000000
/usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_bet -thr 45.7 -Tmin -bin mask -odt char
/usr/share/fsl/5.0/bin/fslstats prefiltered_func_data -k mask -p 50
345.000000
/usr/share/fsl/5.0/bin/fslmaths mask -dilF mask
/usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data -mas mask prefiltered_func_data_thresh
/usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_thresh -Tmean mean_func
/usr/share/fsl/5.0/bin/susan prefiltered_func_data_thresh 258.75 1.6985138004246285 3 1 1 mean_func 258.75 prefiltered_func_data_smooth
/usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_smooth -mas mask prefiltered_func_data_smooth
/usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_smooth -mul 28.985507246376812 prefiltered_func_data_intnorm
/usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_intnorm -Tmean tempMean
/usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_intnorm -bptf 37.49998125000937 -1 -add tempMean prefiltered_func_data_tempfilt
/usr/share/fsl/5.0/bin/imrm tempMean
/usr/share/fsl/5.0/bin/fslmaths prefiltered_func_data_tempfilt filtered_func_data
/usr/share/fsl/5.0/bin/fslmaths filtered_func_data -Tmean mean_func
/bin/rm -rf prefiltered_func_data*