/usr/share/fsl/5.0/bin/fslmaths stats/zstat1 -mas mask thresh_zstat1

echo 76337 > thresh_zstat1.vol
zstat1: DLH=0.28037 VOLUME=76337 RESELS=16.4775

/usr/share/fsl/5.0/bin/fslmaths stats/zstat2 -mas mask thresh_zstat2

echo 76337 > thresh_zstat2.vol
zstat2: DLH=0.28037 VOLUME=76337 RESELS=16.4775

/usr/share/fsl/5.0/bin/fslmaths stats/zstat3 -mas mask thresh_zstat3

echo 76337 > thresh_zstat3.vol
zstat3: DLH=0.28037 VOLUME=76337 RESELS=16.4775

/usr/share/fsl/5.0/bin/fslmaths stats/zstat4 -mas mask thresh_zstat4

echo 76337 > thresh_zstat4.vol
zstat4: DLH=0.28037 VOLUME=76337 RESELS=16.4775

/usr/share/fsl/5.0/bin/fslmaths stats/zstat5 -mas mask thresh_zstat5

echo 76337 > thresh_zstat5.vol
zstat5: DLH=0.28037 VOLUME=76337 RESELS=16.4775

/usr/share/fsl/5.0/bin/fslmaths stats/zstat6 -mas mask thresh_zstat6

echo 76337 > thresh_zstat6.vol
zstat6: DLH=0.28037 VOLUME=76337 RESELS=16.4775

/usr/share/fsl/5.0/bin/fslmaths stats/zstat7 -mas mask thresh_zstat7

echo 76337 > thresh_zstat7.vol
zstat7: DLH=0.28037 VOLUME=76337 RESELS=16.4775

/usr/share/fsl/5.0/bin/fslmaths stats/zstat8 -mas mask thresh_zstat8

echo 76337 > thresh_zstat8.vol
zstat8: DLH=0.28037 VOLUME=76337 RESELS=16.4775

/usr/share/fsl/5.0/bin/fslmaths stats/zstat9 -mas mask thresh_zstat9

echo 76337 > thresh_zstat9.vol
zstat9: DLH=0.28037 VOLUME=76337 RESELS=16.4775

/usr/share/fsl/5.0/bin/fslmaths stats/zstat10 -mas mask thresh_zstat10

echo 76337 > thresh_zstat10.vol
zstat10: DLH=0.28037 VOLUME=76337 RESELS=16.4775

/usr/share/fsl/5.0/bin/fslmaths stats/zstat11 -mas mask thresh_zstat11

echo 76337 > thresh_zstat11.vol
zstat11: DLH=0.28037 VOLUME=76337 RESELS=16.4775

/usr/share/fsl/5.0/bin/fslmaths stats/zstat12 -mas mask thresh_zstat12

echo 76337 > thresh_zstat12.vol
zstat12: DLH=0.28037 VOLUME=76337 RESELS=16.4775

/usr/share/fsl/5.0/bin/fslmaths stats/zstat13 -mas mask thresh_zstat13

echo 76337 > thresh_zstat13.vol
zstat13: DLH=0.28037 VOLUME=76337 RESELS=16.4775

/usr/share/fsl/5.0/bin/cluster -i thresh_zstat1 -c stats/cope1 -t 3.4 -p 0.05 -d 0.28037 --volume=76337 --othresh=thresh_zstat1 -o cluster_mask_zstat1 --connectivity=26  --olmax=lmax_zstat1.txt --scalarname=Z > cluster_zstat1.txt

/usr/share/fsl/5.0/bin/cluster2html . cluster_zstat1 

/usr/share/fsl/5.0/bin/cluster -i thresh_zstat2 -c stats/cope2 -t 3.4 -p 0.05 -d 0.28037 --volume=76337 --othresh=thresh_zstat2 -o cluster_mask_zstat2 --connectivity=26  --olmax=lmax_zstat2.txt --scalarname=Z > cluster_zstat2.txt

/usr/share/fsl/5.0/bin/cluster2html . cluster_zstat2 

/usr/share/fsl/5.0/bin/cluster -i thresh_zstat3 -c stats/cope3 -t 3.4 -p 0.05 -d 0.28037 --volume=76337 --othresh=thresh_zstat3 -o cluster_mask_zstat3 --connectivity=26  --olmax=lmax_zstat3.txt --scalarname=Z > cluster_zstat3.txt

/usr/share/fsl/5.0/bin/cluster2html . cluster_zstat3 

/usr/share/fsl/5.0/bin/cluster -i thresh_zstat4 -c stats/cope4 -t 3.4 -p 0.05 -d 0.28037 --volume=76337 --othresh=thresh_zstat4 -o cluster_mask_zstat4 --connectivity=26  --olmax=lmax_zstat4.txt --scalarname=Z > cluster_zstat4.txt

/usr/share/fsl/5.0/bin/cluster2html . cluster_zstat4 

/usr/share/fsl/5.0/bin/cluster -i thresh_zstat5 -c stats/cope5 -t 3.4 -p 0.05 -d 0.28037 --volume=76337 --othresh=thresh_zstat5 -o cluster_mask_zstat5 --connectivity=26  --olmax=lmax_zstat5.txt --scalarname=Z > cluster_zstat5.txt

/usr/share/fsl/5.0/bin/cluster2html . cluster_zstat5 

/usr/share/fsl/5.0/bin/cluster -i thresh_zstat6 -c stats/cope6 -t 3.4 -p 0.05 -d 0.28037 --volume=76337 --othresh=thresh_zstat6 -o cluster_mask_zstat6 --connectivity=26  --olmax=lmax_zstat6.txt --scalarname=Z > cluster_zstat6.txt

/usr/share/fsl/5.0/bin/cluster2html . cluster_zstat6 

/usr/share/fsl/5.0/bin/cluster -i thresh_zstat7 -c stats/cope7 -t 3.4 -p 0.05 -d 0.28037 --volume=76337 --othresh=thresh_zstat7 -o cluster_mask_zstat7 --connectivity=26  --olmax=lmax_zstat7.txt --scalarname=Z > cluster_zstat7.txt

/usr/share/fsl/5.0/bin/cluster2html . cluster_zstat7 

/usr/share/fsl/5.0/bin/cluster -i thresh_zstat8 -c stats/cope8 -t 3.4 -p 0.05 -d 0.28037 --volume=76337 --othresh=thresh_zstat8 -o cluster_mask_zstat8 --connectivity=26  --olmax=lmax_zstat8.txt --scalarname=Z > cluster_zstat8.txt

/usr/share/fsl/5.0/bin/cluster2html . cluster_zstat8 

/usr/share/fsl/5.0/bin/cluster -i thresh_zstat9 -c stats/cope9 -t 3.4 -p 0.05 -d 0.28037 --volume=76337 --othresh=thresh_zstat9 -o cluster_mask_zstat9 --connectivity=26  --olmax=lmax_zstat9.txt --scalarname=Z > cluster_zstat9.txt

/usr/share/fsl/5.0/bin/cluster2html . cluster_zstat9 

/usr/share/fsl/5.0/bin/cluster -i thresh_zstat10 -c stats/cope10 -t 3.4 -p 0.05 -d 0.28037 --volume=76337 --othresh=thresh_zstat10 -o cluster_mask_zstat10 --connectivity=26  --olmax=lmax_zstat10.txt --scalarname=Z > cluster_zstat10.txt

/usr/share/fsl/5.0/bin/cluster2html . cluster_zstat10 

/usr/share/fsl/5.0/bin/cluster -i thresh_zstat11 -c stats/cope11 -t 3.4 -p 0.05 -d 0.28037 --volume=76337 --othresh=thresh_zstat11 -o cluster_mask_zstat11 --connectivity=26  --olmax=lmax_zstat11.txt --scalarname=Z > cluster_zstat11.txt

/usr/share/fsl/5.0/bin/cluster2html . cluster_zstat11 

/usr/share/fsl/5.0/bin/cluster -i thresh_zstat12 -c stats/cope12 -t 3.4 -p 0.05 -d 0.28037 --volume=76337 --othresh=thresh_zstat12 -o cluster_mask_zstat12 --connectivity=26  --olmax=lmax_zstat12.txt --scalarname=Z > cluster_zstat12.txt

/usr/share/fsl/5.0/bin/cluster2html . cluster_zstat12 

/usr/share/fsl/5.0/bin/cluster -i thresh_zstat13 -c stats/cope13 -t 3.4 -p 0.05 -d 0.28037 --volume=76337 --othresh=thresh_zstat13 -o cluster_mask_zstat13 --connectivity=26  --olmax=lmax_zstat13.txt --scalarname=Z > cluster_zstat13.txt

/usr/share/fsl/5.0/bin/cluster2html . cluster_zstat13 

/usr/share/fsl/5.0/bin/fslstats thresh_zstat1 -l 0.0001 -R 2>/dev/null
0.000000 0.000000 

/usr/share/fsl/5.0/bin/fslstats thresh_zstat2 -l 0.0001 -R 2>/dev/null
3.402764 4.823565 

/usr/share/fsl/5.0/bin/fslstats thresh_zstat3 -l 0.0001 -R 2>/dev/null
3.412243 4.106473 

/usr/share/fsl/5.0/bin/fslstats thresh_zstat4 -l 0.0001 -R 2>/dev/null
0.000000 0.000000 

/usr/share/fsl/5.0/bin/fslstats thresh_zstat5 -l 0.0001 -R 2>/dev/null
0.000000 0.000000 

/usr/share/fsl/5.0/bin/fslstats thresh_zstat6 -l 0.0001 -R 2>/dev/null
3.400199 7.367801 

/usr/share/fsl/5.0/bin/fslstats thresh_zstat7 -l 0.0001 -R 2>/dev/null
3.400763 5.505807 

/usr/share/fsl/5.0/bin/fslstats thresh_zstat8 -l 0.0001 -R 2>/dev/null
3.433286 4.829387 

/usr/share/fsl/5.0/bin/fslstats thresh_zstat9 -l 0.0001 -R 2>/dev/null
3.407571 4.509743 

/usr/share/fsl/5.0/bin/fslstats thresh_zstat10 -l 0.0001 -R 2>/dev/null
3.400357 8.718464 

/usr/share/fsl/5.0/bin/fslstats thresh_zstat11 -l 0.0001 -R 2>/dev/null
3.403225 8.676505 

/usr/share/fsl/5.0/bin/fslstats thresh_zstat12 -l 0.0001 -R 2>/dev/null
3.400954 7.961963 

/usr/share/fsl/5.0/bin/fslstats thresh_zstat13 -l 0.0001 -R 2>/dev/null
3.405545 4.382231 
Rendering using zmin=3.400199 zmax=8.718464

/usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat1 3.400199 8.718464 rendered_thresh_zstat1

/usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat1 -A 750 rendered_thresh_zstat1.png

/bin/cp /usr/share/fsl/5.0/etc/luts/ramp.gif .ramp.gif

/usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat2 3.400199 8.718464 rendered_thresh_zstat2

/usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat2 -A 750 rendered_thresh_zstat2.png

/usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat3 3.400199 8.718464 rendered_thresh_zstat3

/usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat3 -A 750 rendered_thresh_zstat3.png

/usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat4 3.400199 8.718464 rendered_thresh_zstat4

/usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat4 -A 750 rendered_thresh_zstat4.png

/usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat5 3.400199 8.718464 rendered_thresh_zstat5

/usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat5 -A 750 rendered_thresh_zstat5.png

/usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat6 3.400199 8.718464 rendered_thresh_zstat6

/usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat6 -A 750 rendered_thresh_zstat6.png

/usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat7 3.400199 8.718464 rendered_thresh_zstat7

/usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat7 -A 750 rendered_thresh_zstat7.png

/usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat8 3.400199 8.718464 rendered_thresh_zstat8

/usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat8 -A 750 rendered_thresh_zstat8.png

/usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat9 3.400199 8.718464 rendered_thresh_zstat9

/usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat9 -A 750 rendered_thresh_zstat9.png

/usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat10 3.400199 8.718464 rendered_thresh_zstat10

/usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat10 -A 750 rendered_thresh_zstat10.png

/usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat11 3.400199 8.718464 rendered_thresh_zstat11

/usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat11 -A 750 rendered_thresh_zstat11.png

/usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat12 3.400199 8.718464 rendered_thresh_zstat12

/usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat12 -A 750 rendered_thresh_zstat12.png

/usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat13 3.400199 8.718464 rendered_thresh_zstat13

/usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat13 -A 750 rendered_thresh_zstat13.png

mkdir -p tsplot ; /usr/share/fsl/5.0/bin/tsplot . -f filtered_func_data -o tsplot