Progress Report / Log

Started at Thu 19 Mar 2020 06:58:04 AM CET

Feat main script


/bin/cp /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.fsf design.fsf

/usr/share/fsl/5.0/bin/feat_model design

mkdir .files;cp /usr/share/fsl/5.0/doc/fsl.css .files;cp -r /usr/share/fsl/5.0/doc/images .files/images

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat2_pre   /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat -gfeatprep
1732

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 1732  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope1.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope1.feat -I 1 -flame1
14130

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 14130 -t ./.flame
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 15017  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope1.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope1.feat -flame3
19828

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 19828  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope1.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope1.feat -poststats 1
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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 20705  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope1.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope1.feat -stop
28122

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 1732  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope2.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope2.feat -I 2 -flame1
29051

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 29051 -t ./.flame
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 30021  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope2.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope2.feat -flame3
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 3806  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope2.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope2.feat -poststats 1
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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 5304  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope2.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope2.feat -stop
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 1732  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope3.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope3.feat -I 3 -flame1
11754

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 11754 -t ./.flame
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 13134  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope3.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope3.feat -flame3
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 20918  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope3.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope3.feat -poststats 1
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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 22029  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope3.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope3.feat -stop
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 1732  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope4.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope4.feat -I 4 -flame1
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 27324 -t ./.flame
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 28886  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope4.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope4.feat -flame3
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 5321  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope4.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope4.feat -poststats 1
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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 6087  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope4.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope4.feat -stop
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 1732  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope5.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope5.feat -I 5 -flame1
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 11112 -t ./.flame
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 13000  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope5.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope5.feat -flame3
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 21012  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope5.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope5.feat -poststats 1
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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 21723  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope5.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope5.feat -stop
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 1732  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope6.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope6.feat -I 6 -flame1
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 26891 -t ./.flame
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 28831  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope6.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope6.feat -flame3
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 3794  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope6.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope6.feat -poststats 1
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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 4634  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope6.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope6.feat -stop
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 1732  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope7.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope7.feat -I 7 -flame1
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 10172 -t ./.flame
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 12414  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope7.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope7.feat -flame3
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 19047  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope7.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope7.feat -poststats 1
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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 19902  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope7.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope7.feat -stop
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 1732  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope8.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope8.feat -I 8 -flame1
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 25780 -t ./.flame
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 28115  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope8.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope8.feat -flame3
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 2138  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope8.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope8.feat -poststats 1
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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 3180  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope8.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope8.feat -stop
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 1732  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope9.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope9.feat -I 9 -flame1
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 9344 -t ./.flame
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 12110  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope9.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope9.feat -flame3
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 18714  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope9.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope9.feat -poststats 1
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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 19403  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope9.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope9.feat -stop
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 1732  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat -I 10 -flame1
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 24573 -t ./.flame
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 26088  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat -flame3
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 30854  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat -poststats 1
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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 31094  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat -stop
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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 28122,11215,26458,9955,25513,8799,24356,7731,23396,32008  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-02/2nd-lvl_movie-ppa-ind.gfeat -stop

Higher-level input files preparation

/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_S7YPbj -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_gwqxyM -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_LcJNy5 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_zq8YEg -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_03jc1u -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_iFtWTH -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_kQEOKX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_jSxaZZ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_xIXVWe -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_LAnYdu -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_iHJBMI -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_l63guY -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_nmNRK2 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_K8VLYd -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_P6ldSp -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_eug57F -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_z6U3GV -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_rM7yw1 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_pHIJfe -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_mr6Xlp -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_fEKSJD -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_pgHSrT -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_nWkrS7 -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_szvm9h -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_OVJbmN -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_ygdWHe -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_6gYVsj -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_fBEzsu -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_ws4DBK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_y7UF4X -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_Gujqjc -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_ZNsiSg -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_0kjNot -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_qhmogJ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_gVlXAU -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_UFpy78 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_JI8ucl -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_4FKtAp -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_HsMq0B -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_lU14jS -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_MKZ6f3 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_uf4R6i -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_hlA3nn -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_TG6PYB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_Z56HtQ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_bvu2X4 -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_pm1Ywm -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_AGTaGE -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_qmxX47 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_pUVyIl -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_pxFzUz -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_zGCf1E -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_9uvxRP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_6dYVy4 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_BpYHXj -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_fOXIhv -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_7aRaaA -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_FzLlbP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_x4el74 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_hhvN0f -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_PDTgVu -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_89tvfy -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_t36gEO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_UscF92 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_yF5d9e -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_JnpCot -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_QJz7TJ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_10WV3M -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_rlS3W1 -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_Wu4Y8g -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_S2sNLG -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_ehUZf7 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_WsJBak -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_4GVdXx -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_thBGYN -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_vVJe4S -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_3hCUj4 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_hkjZgj -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_pi60cy -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_2enxrJ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_LTm4QR -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_l3tu55 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_J5L0Wi -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_q1UKau -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_upZJmJ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_98dvvU -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_hPM5e0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_j4e1Kd -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_MU7Zht -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_9bssqF -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_M3KRBT -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_pSMU10 -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_ihnN3f -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_UeLdcG -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_hRhxa2 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_YHPLpd -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_Gr4R9s -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_qJ1TdH -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_vrsTjX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_JNOHja -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_6yG5Kd -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_2fa7bp -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_jXwWwD -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_PiJa7T -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_Ou7sE8 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_PZ0y7c -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_KZ4a6n -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_fqORXF -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_9n986S -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_xzQgr7 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_GsJR1d -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_GiEIpr -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_9wwYpG -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_HqTi1W -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_1KnQxb -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_EPMGJg -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_iCzNAP -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_mS9Cvi -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_Pcgzbr -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_2eJaWF -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_41TLWR -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_ltvL25 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_Qxdqwh -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_Ho0mhn -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_X2ntdB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_XtA9dO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_gPS8GZ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_7dmJOf -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_Yx6yLq -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_ion2Iu -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_SGlESJ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_KiitMY -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_KlOy59 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_wWovSo -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_AykoSs -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_HtsFNJ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_2sbyUV -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_JDbUOa -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_byZKZn -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_POTMQM -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_KA1Hhh -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_VK8Lov -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_OVjoiG -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_GROUHK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_yzEdmZ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_Fn0MWf -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_xq29Uq -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_8pwbZG -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_SQiYmK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_tgNklW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_QJeyec -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_U7ojKm -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_adQCrD -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_4ZzoEO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_0upwVS -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_KnZ697 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_VWXUNj -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_2l5xiy -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_sRYpQK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_t9BMcP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_T3AfR4 -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_bsVivl -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_peciPT -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_lkqBef -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_ONMhxt -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_0nlIMJ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_TouubY -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_WwMlT2 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_bX5Lah -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_owPq0v -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_BEOhDH -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_YcskrW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_P5sTa4 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_C5BDzf -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_SGionu -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_J8loMJ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_Cp3h4Y -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_Yilrf2 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_cbs77g -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_MrUq8s -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_1e6JNI -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_i82VfX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_3Hi8a9 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_Qfhk7f -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg/standard bg_image

/usr/share/fsl/5.0/bin/fslmerge -t mask  /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/mask

mkdir -p inputreg

/usr/share/fsl/5.0/bin/fslmaths ../mask -mul 8 -Tmean masksum -odt short

/usr/share/fsl/5.0/bin/fslmaths masksum -thr 8 -add masksum masksum

/usr/share/fsl/5.0/bin/overlay 0 0 -c ../bg_image -a masksum 0.9 16 masksum_overlay

/usr/share/fsl/5.0/bin/slicer masksum_overlay -S 2 750 masksum_overlay.png

/usr/share/fsl/5.0/bin/fslmaths masksum -mul 0 maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 1 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 2 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 3 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 4 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 5 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 6 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 7 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 8 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths masksum -thr 7 -uthr 7 -bin -mul maskunique maskunique

/usr/share/fsl/5.0/bin/overlay 0 0 ../bg_image -a maskunique 0.9 8 maskunique_overlay

/usr/share/fsl/5.0/bin/slicer maskunique_overlay -S 2 750 maskunique_overlay.png

/bin/cp /usr/share/fsl/5.0/etc/luts/ramp.gif .ramp.gif

/usr/share/fsl/5.0/bin/fslmaths mask -Tmin mask

/usr/share/fsl/5.0/bin/fslmerge -t mean_func  /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/mean_func

/usr/share/fsl/5.0/bin/fslmaths mean_func -Tmean mean_func

/usr/share/fsl/5.0/bin/fslmerge -t cope1  /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/cope1

/usr/share/fsl/5.0/bin/fslmaths cope1 -mas mask cope1

printf '0.05557339999999999 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope1  /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope1

/usr/share/fsl/5.0/bin/fslmaths varcope1 -mas mask varcope1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t1  /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths tdof_t1 -mas mask tdof_t1

/usr/share/fsl/5.0/bin/fslmerge -t cope2  /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/cope2

/usr/share/fsl/5.0/bin/fslmaths cope2 -mas mask cope2

printf '0.0384536725 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope2  /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope2

/usr/share/fsl/5.0/bin/fslmaths varcope2 -mas mask varcope2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t2  /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths tdof_t2 -mas mask tdof_t2

/usr/share/fsl/5.0/bin/fslmerge -t cope3  /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/cope3

/usr/share/fsl/5.0/bin/fslmaths cope3 -mas mask cope3

printf '0.04571460624999999 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope3  /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope3

/usr/share/fsl/5.0/bin/fslmaths varcope3 -mas mask varcope3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t3  /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths tdof_t3 -mas mask tdof_t3

/usr/share/fsl/5.0/bin/fslmerge -t cope4  /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/cope4

/usr/share/fsl/5.0/bin/fslmaths cope4 -mas mask cope4

printf '0.029084221250000007 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope4  /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope4

/usr/share/fsl/5.0/bin/fslmaths varcope4 -mas mask varcope4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t4  /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths tdof_t4 -mas mask tdof_t4

/usr/share/fsl/5.0/bin/fslmerge -t cope5  /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/cope5

/usr/share/fsl/5.0/bin/fslmaths cope5 -mas mask cope5

printf '0.0387868475 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope5  /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope5

/usr/share/fsl/5.0/bin/fslmaths varcope5 -mas mask varcope5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t5  /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths tdof_t5 -mas mask tdof_t5

/usr/share/fsl/5.0/bin/fslmerge -t cope6  /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/cope6

/usr/share/fsl/5.0/bin/fslmaths cope6 -mas mask cope6

printf '0.04703059875 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope6  /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope6

/usr/share/fsl/5.0/bin/fslmaths varcope6 -mas mask varcope6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t6  /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths tdof_t6 -mas mask tdof_t6

/usr/share/fsl/5.0/bin/fslmerge -t cope7  /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/cope7

/usr/share/fsl/5.0/bin/fslmaths cope7 -mas mask cope7

printf '0.044608413750000006 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope7  /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope7

/usr/share/fsl/5.0/bin/fslmaths varcope7 -mas mask varcope7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t7  /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths tdof_t7 -mas mask tdof_t7

/usr/share/fsl/5.0/bin/fslmerge -t cope8  /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/cope8

/usr/share/fsl/5.0/bin/fslmaths cope8 -mas mask cope8

printf '0.026228535 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope8  /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope8

/usr/share/fsl/5.0/bin/fslmaths varcope8 -mas mask varcope8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t8  /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths tdof_t8 -mas mask tdof_t8

/usr/share/fsl/5.0/bin/fslmerge -t cope9  /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/cope9

/usr/share/fsl/5.0/bin/fslmaths cope9 -mas mask cope9

printf '0.026382725 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope9  /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope9

/usr/share/fsl/5.0/bin/fslmaths varcope9 -mas mask varcope9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t9  /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths tdof_t9 -mas mask tdof_t9

/usr/share/fsl/5.0/bin/fslmerge -t cope10  /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/cope10

/usr/share/fsl/5.0/bin/fslmaths cope10 -mas mask cope10

printf '0.08995428624999999 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope10  /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope10

/usr/share/fsl/5.0/bin/fslmaths varcope10 -mas mask varcope10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t10  /data/project/studyforrest_ppa/sub-02/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-02/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-02/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-02/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-02/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-02/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-02/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-02/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths tdof_t10 -mas mask tdof_t10