Progress Report / Log

Started at Sat 14 Mar 2020 12:59:47 AM CET

Feat main script


/bin/cp /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.fsf design.fsf

/usr/share/fsl/5.0/bin/feat_model design

mkdir .files;cp /usr/share/fsl/5.0/doc/fsl.css .files;cp -r /usr/share/fsl/5.0/doc/images .files/images

/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat2_pre   /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat -gfeatprep
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 28046  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope1.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope1.feat -I 1 -flame1
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 11831 -t ./.flame
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 13801  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope1.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope1.feat -flame3
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 18235  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope1.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope1.feat -poststats 1
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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 18769  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope1.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope1.feat -stop
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 28046  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope2.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope2.feat -I 2 -flame1
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 22562 -t ./.flame
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 24838  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope2.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope2.feat -flame3
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 30858  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope2.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope2.feat -poststats 1
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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 31117  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope2.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope2.feat -stop
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 28046  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope3.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope3.feat -I 3 -flame1
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 2954 -t ./.flame
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 5103  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope3.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope3.feat -flame3
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 11272  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope3.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope3.feat -poststats 1
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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 11499  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope3.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope3.feat -stop
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 28046  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope4.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope4.feat -I 4 -flame1
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 15436 -t ./.flame
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 17386  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope4.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope4.feat -flame3
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 23775  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope4.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope4.feat -poststats 1
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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 24047  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope4.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope4.feat -stop
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 28046  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope5.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope5.feat -I 5 -flame1
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 28034 -t ./.flame
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 29629  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope5.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope5.feat -flame3
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 3629  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope5.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope5.feat -poststats 1
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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 4199  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope5.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope5.feat -stop
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 28046  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope6.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope6.feat -I 6 -flame1
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 8222 -t ./.flame
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 9799  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope6.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope6.feat -flame3
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 16121  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope6.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope6.feat -poststats 1
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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 16689  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope6.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope6.feat -stop
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 28046  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope7.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope7.feat -I 7 -flame1
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 20700 -t ./.flame
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 22485  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope7.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope7.feat -flame3
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 28659  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope7.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope7.feat -poststats 1
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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 29110  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope7.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope7.feat -stop
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 28046  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope8.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope8.feat -I 8 -flame1
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 1130 -t ./.flame
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 2542  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope8.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope8.feat -flame3
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 8733  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope8.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope8.feat -poststats 1
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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 9537  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope8.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope8.feat -stop
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 28046  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope9.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope9.feat -I 9 -flame1
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 22217 -t ./.flame
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 24431  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope9.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope9.feat -flame3
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 32260  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope9.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope9.feat -poststats 1
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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 425  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope9.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope9.feat -stop
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 28046  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope10.feat -I 10 -flame1
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 7228 -t ./.flame
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 9380  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope10.feat -flame3
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/usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 17267  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope10.feat -poststats 1
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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 17874  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope10.feat -stop
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/usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 21308,1655,14101,26691,6871,19384,32026,20450,5244,22499  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-01/2nd-lvl_movie-ppa-grp.gfeat -stop

Higher-level input files preparation

/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat

/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=example_func --out=frgrot_T3qPAG --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mean_func --out=frgrot_x9GRHu --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope1 --out=frgrot_oi6J56 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope10 --out=frgrot_VITv1w --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope2 --out=frgrot_4GgN0K --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope3 --out=frgrot_YTFStd --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope4 --out=frgrot_4nZXFE --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope5 --out=frgrot_nWrR60 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope6 --out=frgrot_1Ghfjl --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope7 --out=frgrot_MkshJK --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope8 --out=frgrot_lCedz3 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope9 --out=frgrot_iSryBs --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope1 --out=frgrot_OPgV4T --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope10 --out=frgrot_8soG88 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope2 --out=frgrot_6qoxFG --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope3 --out=frgrot_Ulm6LX --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope4 --out=frgrot_hMJlPq --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope5 --out=frgrot_QweabP --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope6 --out=frgrot_Ep8gB6 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope7 --out=frgrot_PmR18t --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope8 --out=frgrot_pYymZU --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope9 --out=frgrot_LKiO88 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mask --out=frgrot_91KJgD --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=nn


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat

/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=example_func --out=frgrot_pOnB03 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mean_func --out=frgrot_Th2zAG --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope1 --out=frgrot_W0vEGp --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope10 --out=frgrot_PNUXJX --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope2 --out=frgrot_LegsQ7 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope3 --out=frgrot_WzTeTw --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope4 --out=frgrot_tGUhfX --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope5 --out=frgrot_hoK0Yg --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope6 --out=frgrot_uPOB1E --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope7 --out=frgrot_fh2u0b --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope8 --out=frgrot_InMINq --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope9 --out=frgrot_5VbT9N --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope1 --out=frgrot_pdKlki --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope10 --out=frgrot_eQoOTA --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope2 --out=frgrot_TiuK1W --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope3 --out=frgrot_UjeZp0 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope4 --out=frgrot_Ih5XfP --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope5 --out=frgrot_E70Ysl --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope6 --out=frgrot_PqVgIk --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope7 --out=frgrot_dzqgbK --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope8 --out=frgrot_DR8bZX --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope9 --out=frgrot_MPCD4n --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mask --out=frgrot_FdkVXO --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=nn


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat

/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=example_func --out=frgrot_Ez2qA7 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mean_func --out=frgrot_i07ogT --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope1 --out=frgrot_QGstJI --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope10 --out=frgrot_sCnkH2 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope2 --out=frgrot_rvmAir --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope3 --out=frgrot_JcFZfP --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope4 --out=frgrot_bvg2J3 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope5 --out=frgrot_H3MxAw --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope6 --out=frgrot_V7XzCY --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope7 --out=frgrot_kIyCig --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope8 --out=frgrot_z7Ug5I --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope9 --out=frgrot_4EXLg8 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope1 --out=frgrot_KAHjZm --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope10 --out=frgrot_3EjWZL --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope2 --out=frgrot_p59kq8 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope3 --out=frgrot_FMBJvo --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope4 --out=frgrot_wIp5yN --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope5 --out=frgrot_VjXk88 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope6 --out=frgrot_6boJwx --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope7 --out=frgrot_ewMc4Z --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope8 --out=frgrot_dhXCSf --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope9 --out=frgrot_UGHxZG --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mask --out=frgrot_i7qkm5 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=nn


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat

/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=example_func --out=frgrot_tuCupt --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mean_func --out=frgrot_pD1TZi --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope1 --out=frgrot_ZPwMrW --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope10 --out=frgrot_XewJGh --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope2 --out=frgrot_ZE5Qaz --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope3 --out=frgrot_HDNYtT --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope4 --out=frgrot_QpkyIm --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope5 --out=frgrot_QGtZvy --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope6 --out=frgrot_hUiS2Y --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope7 --out=frgrot_b7Z8iq --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope8 --out=frgrot_V2lHBI --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope9 --out=frgrot_UPixva --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope1 --out=frgrot_eZvrxy --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope10 --out=frgrot_Crc9iM --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope2 --out=frgrot_nHaPQe --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope3 --out=frgrot_DS8UWF --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope4 --out=frgrot_575qcX --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope5 --out=frgrot_JAvL4k --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope6 --out=frgrot_llNN3D --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope7 --out=frgrot_ebNKO8 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope8 --out=frgrot_m9o7QC --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope9 --out=frgrot_JNhP5X --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mask --out=frgrot_71ARzo --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=nn


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat

/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=example_func --out=frgrot_nYtGSO --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mean_func --out=frgrot_bcCCHH --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope1 --out=frgrot_pjDOrj --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope10 --out=frgrot_A30amF --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope2 --out=frgrot_vKF7R2 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope3 --out=frgrot_NUcNhi --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope4 --out=frgrot_uUsL2M --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope5 --out=frgrot_5sO7G2 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope6 --out=frgrot_QX4uEr --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope7 --out=frgrot_W6kJ4Q --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope8 --out=frgrot_dXEJx7 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope9 --out=frgrot_ekjzyA --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope1 --out=frgrot_S18TfZ --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope10 --out=frgrot_dV26Od --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope2 --out=frgrot_eacdQG --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope3 --out=frgrot_hn0kn2 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope4 --out=frgrot_r4Mx2h --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope5 --out=frgrot_n8eIOI --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope6 --out=frgrot_FYptK5 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope7 --out=frgrot_Lfrpop --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope8 --out=frgrot_Lpi1bO --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope9 --out=frgrot_nnrnUc --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mask --out=frgrot_jRJ5bs --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=nn


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat

/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=example_func --out=frgrot_xntg6W --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mean_func --out=frgrot_fqpNoB --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope1 --out=frgrot_3708vr --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope10 --out=frgrot_Saxv1L --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope2 --out=frgrot_9amP5j --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope3 --out=frgrot_bXkWfz --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope4 --out=frgrot_6X1KSZ --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope5 --out=frgrot_Pppy8q --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope6 --out=frgrot_v1qLVE --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope7 --out=frgrot_N8COd6 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope8 --out=frgrot_uvvfEw --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope9 --out=frgrot_pbfQII --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope1 --out=frgrot_KpteBd --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope10 --out=frgrot_sjyY2y --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope2 --out=frgrot_1HGhnQ --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope3 --out=frgrot_w5zu6d --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope4 --out=frgrot_jUy4OI --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope5 --out=frgrot_bKQp0U --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope6 --out=frgrot_vGCJpl --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope7 --out=frgrot_7NoYyI --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope8 --out=frgrot_w3mePZ --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope9 --out=frgrot_vKkTmp --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mask --out=frgrot_GdLfXM --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=nn


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat

/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=example_func --out=frgrot_SQDT25 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mean_func --out=frgrot_Il5G6U --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope1 --out=frgrot_aR9eCD --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope10 --out=frgrot_Q8GsFY --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope2 --out=frgrot_TpoT0g --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope3 --out=frgrot_gaBN1D --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope4 --out=frgrot_5cK3Z2 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope5 --out=frgrot_8bbuDj --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope6 --out=frgrot_iW5IOI --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope7 --out=frgrot_kV8Uk7 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope8 --out=frgrot_PQO0Kk --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope9 --out=frgrot_U5JkgN --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope1 --out=frgrot_CiuH37 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope10 --out=frgrot_FK2K3q --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope2 --out=frgrot_jc3q0S --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope3 --out=frgrot_XBbZZa --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope4 --out=frgrot_nBJsAB --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope5 --out=frgrot_BkexK7 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope6 --out=frgrot_flx2fo --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope7 --out=frgrot_J4O3IN --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope8 --out=frgrot_68uYQh --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope9 --out=frgrot_5nz7ox --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mask --out=frgrot_YAGKeY --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=nn


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat

/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=example_func --out=frgrot_mg0mYp --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mean_func --out=frgrot_fO4Lk8 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope1 --out=frgrot_7bjaGU --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope10 --out=frgrot_Ke7xfi --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope2 --out=frgrot_I6ahjx --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope3 --out=frgrot_bgaz1R --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope4 --out=frgrot_5wixXg --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope5 --out=frgrot_SWlcfH --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope6 --out=frgrot_XwyP9Y --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope7 --out=frgrot_7xzenr --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope8 --out=frgrot_iGGcxE --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/cope9 --out=frgrot_GOess6 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope1 --out=frgrot_Oreknz --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope10 --out=frgrot_JxhOaM --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope2 --out=frgrot_n7Zcbe --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope3 --out=frgrot_VT5FTG --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope4 --out=frgrot_bbkxyY --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope5 --out=frgrot_ufkSsp --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope6 --out=frgrot_VhsB4V --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope7 --out=frgrot_GfB2Hb --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope8 --out=frgrot_2DMbiG --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=stats/varcope9 --out=frgrot_edwO00 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear


/usr/share/fsl/5.0/bin/applywarp --ref=reg/standard --in=mask --out=frgrot_2Hjjfq --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=nn


/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg/standard bg_image

/usr/share/fsl/5.0/bin/fslmerge -t mask  /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/mask

mkdir -p inputreg

/usr/share/fsl/5.0/bin/fslmaths ../mask -mul 8 -Tmean masksum -odt short

/usr/share/fsl/5.0/bin/fslmaths masksum -thr 8 -add masksum masksum

/usr/share/fsl/5.0/bin/overlay 0 0 -c ../bg_image -a masksum 0.9 16 masksum_overlay

/usr/share/fsl/5.0/bin/slicer masksum_overlay -S 2 750 masksum_overlay.png

/usr/share/fsl/5.0/bin/fslmaths masksum -mul 0 maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/mask -mul -1 -add 1 -mul 1 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/mask -mul -1 -add 1 -mul 2 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/mask -mul -1 -add 1 -mul 3 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/mask -mul -1 -add 1 -mul 4 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/mask -mul -1 -add 1 -mul 5 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/mask -mul -1 -add 1 -mul 6 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/mask -mul -1 -add 1 -mul 7 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/mask -mul -1 -add 1 -mul 8 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths masksum -thr 7 -uthr 7 -bin -mul maskunique maskunique

/usr/share/fsl/5.0/bin/overlay 0 0 ../bg_image -a maskunique 0.9 8 maskunique_overlay

/usr/share/fsl/5.0/bin/slicer maskunique_overlay -S 2 750 maskunique_overlay.png

/bin/cp /usr/share/fsl/5.0/etc/luts/ramp.gif .ramp.gif

/usr/share/fsl/5.0/bin/fslmaths mask -Tmin mask

/usr/share/fsl/5.0/bin/fslmerge -t mean_func  /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/mean_func

/usr/share/fsl/5.0/bin/fslmaths mean_func -Tmean mean_func

/usr/share/fsl/5.0/bin/fslmerge -t cope1  /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/cope1

/usr/share/fsl/5.0/bin/fslmaths cope1 -mas mask cope1

printf '0.055862131249999995 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope1  /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/varcope1

/usr/share/fsl/5.0/bin/fslmaths varcope1 -mas mask varcope1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/cope1 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/cope1 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/cope1 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/cope1 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/cope1 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/cope1 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/cope1 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/cope1 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t1  /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths tdof_t1 -mas mask tdof_t1

/usr/share/fsl/5.0/bin/fslmerge -t cope2  /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/cope2

/usr/share/fsl/5.0/bin/fslmaths cope2 -mas mask cope2

printf '0.039057305 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope2  /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/varcope2

/usr/share/fsl/5.0/bin/fslmaths varcope2 -mas mask varcope2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/cope2 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/cope2 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/cope2 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/cope2 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/cope2 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/cope2 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/cope2 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/cope2 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t2  /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths tdof_t2 -mas mask tdof_t2

/usr/share/fsl/5.0/bin/fslmerge -t cope3  /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/cope3

/usr/share/fsl/5.0/bin/fslmaths cope3 -mas mask cope3

printf '0.04635069625 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope3  /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/varcope3

/usr/share/fsl/5.0/bin/fslmaths varcope3 -mas mask varcope3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/cope3 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/cope3 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/cope3 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/cope3 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/cope3 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/cope3 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/cope3 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/cope3 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t3  /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths tdof_t3 -mas mask tdof_t3

/usr/share/fsl/5.0/bin/fslmerge -t cope4  /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/cope4

/usr/share/fsl/5.0/bin/fslmaths cope4 -mas mask cope4

printf '0.02917094875 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope4  /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/varcope4

/usr/share/fsl/5.0/bin/fslmaths varcope4 -mas mask varcope4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/cope4 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/cope4 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/cope4 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/cope4 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/cope4 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/cope4 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/cope4 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/cope4 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t4  /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths tdof_t4 -mas mask tdof_t4

/usr/share/fsl/5.0/bin/fslmerge -t cope5  /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/cope5

/usr/share/fsl/5.0/bin/fslmaths cope5 -mas mask cope5

printf '0.039307255000000006 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope5  /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/varcope5

/usr/share/fsl/5.0/bin/fslmaths varcope5 -mas mask varcope5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/cope5 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/cope5 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/cope5 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/cope5 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/cope5 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/cope5 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/cope5 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/cope5 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t5  /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths tdof_t5 -mas mask tdof_t5

/usr/share/fsl/5.0/bin/fslmerge -t cope6  /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/cope6

/usr/share/fsl/5.0/bin/fslmaths cope6 -mas mask cope6

printf '0.047837505 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope6  /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/varcope6

/usr/share/fsl/5.0/bin/fslmaths varcope6 -mas mask varcope6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/cope6 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/cope6 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/cope6 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/cope6 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/cope6 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/cope6 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/cope6 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/cope6 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t6  /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths tdof_t6 -mas mask tdof_t6

/usr/share/fsl/5.0/bin/fslmerge -t cope7  /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/cope7

/usr/share/fsl/5.0/bin/fslmaths cope7 -mas mask cope7

printf '0.04449975125 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope7  /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/varcope7

/usr/share/fsl/5.0/bin/fslmaths varcope7 -mas mask varcope7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/cope7 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/cope7 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/cope7 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/cope7 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/cope7 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/cope7 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/cope7 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/cope7 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t7  /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths tdof_t7 -mas mask tdof_t7

/usr/share/fsl/5.0/bin/fslmerge -t cope8  /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/cope8

/usr/share/fsl/5.0/bin/fslmaths cope8 -mas mask cope8

printf '0.026386558749999997 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope8  /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/varcope8

/usr/share/fsl/5.0/bin/fslmaths varcope8 -mas mask varcope8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/cope8 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/cope8 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/cope8 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/cope8 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/cope8 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/cope8 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/cope8 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/cope8 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t8  /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths tdof_t8 -mas mask tdof_t8

/usr/share/fsl/5.0/bin/fslmerge -t cope9  /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/cope9

/usr/share/fsl/5.0/bin/fslmaths cope9 -mas mask cope9

printf '0.026212181249999997 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope9  /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/varcope9

/usr/share/fsl/5.0/bin/fslmaths varcope9 -mas mask varcope9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/cope9 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/cope9 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/cope9 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/cope9 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/cope9 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/cope9 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/cope9 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/cope9 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t9  /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths tdof_t9 -mas mask tdof_t9

/usr/share/fsl/5.0/bin/fslmerge -t cope10  /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/cope10

/usr/share/fsl/5.0/bin/fslmaths cope10 -mas mask cope10

printf '0.09046142875000002 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope10  /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/varcope10

/usr/share/fsl/5.0/bin/fslmaths varcope10 -mas mask varcope10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/cope10 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/cope10 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/cope10 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/cope10 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/cope10 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/cope10 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/cope10 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/cope10 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t10  /data/project/studyforrest_ppa/sub-01/run-1_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-01/run-2_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-01/run-3_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-01/run-4_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-01/run-5_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-01/run-6_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-01/run-7_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-01/run-8_movie-ppa-grp.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths tdof_t10 -mas mask tdof_t10