Human-L2-3-Cortical-Microcircuit/NeuroML2/rotated_cells/HL23VIP_sim.cell.nml

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    <cell id="HL23VIP_sim">
        <notes>Cell: HL23VIP exported from NEURON ModelView. Reference: Yao, H. K.; Guet-McCreight, A.; Mazza, F.; Moradi Chameh, H.; Prevot, T. D.; Griffiths, J. D.; Tripathy, S. J.; Valiante, T. A.; Sibille, E. &amp; Hay, E.  Reduced inhibition in depression impairs stimulus processing in human cortical microcircuits Cell Reports, Elsevier, 2022, 38</notes>
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                <member segment="1187"/>
                <member segment="1188"/>
                <member segment="1189"/>
                <member segment="1190"/>
                <member segment="1191"/>
                <member segment="1192"/>
                <member segment="1193"/>
                <member segment="1194"/>
                <member segment="1195"/>
                <member segment="1196"/>
                <member segment="1197"/>
                <member segment="1198"/>
                <member segment="1199"/>
                <member segment="1200"/>
                <member segment="1201"/>
                <member segment="1202"/>
                <member segment="1203"/>
                <member segment="1204"/>
                <member segment="1205"/>
                <member segment="1206"/>
                <member segment="1207"/>
                <member segment="1208"/>
                <member segment="1209"/>
                <member segment="1210"/>
                <member segment="1211"/>
                <member segment="1212"/>
                <member segment="1213"/>
                <member segment="1214"/>
                <member segment="1215"/>
                <member segment="1216"/>
                <member segment="1217"/>
                <member segment="1218"/>
                <member segment="1219"/>
                <member segment="1220"/>
                <member segment="1221"/>
                <member segment="1222"/>
                <member segment="1223"/>
                <member segment="1224"/>
                <member segment="1225"/>
                <member segment="1226"/>
                <member segment="1227"/>
                <member segment="1228"/>
                <member segment="1229"/>
                <member segment="1230"/>
                <member segment="1231"/>
                <member segment="1232"/>
                <member segment="1233"/>
                <member segment="1234"/>
                <member segment="1235"/>
                <member segment="1236"/>
                <member segment="1237"/>
                <member segment="1238"/>
                <member segment="1239"/>
                <member segment="1240"/>
                <member segment="1241"/>
                <member segment="1242"/>
                <member segment="1243"/>
                <member segment="1244"/>
                <member segment="1245"/>
                <member segment="1246"/>
                <member segment="1247"/>
                <member segment="1248"/>
                <member segment="1249"/>
                <member segment="1250"/>
                <member segment="1251"/>
                <member segment="1252"/>
                <member segment="1253"/>
                <member segment="1254"/>
                <member segment="1255"/>
                <member segment="1256"/>
                <member segment="1257"/>
                <member segment="1258"/>
                <member segment="1259"/>
                <member segment="1260"/>
                <member segment="1261"/>
                <member segment="1262"/>
                <member segment="1263"/>
                <member segment="1264"/>
                <member segment="1265"/>
                <member segment="1266"/>
                <member segment="1267"/>
                <member segment="1268"/>
                <member segment="1269"/>
                <member segment="1270"/>
                <member segment="1271"/>
                <member segment="1272"/>
                <member segment="1273"/>
                <member segment="1274"/>
                <member segment="1275"/>
                <member segment="1276"/>
                <member segment="1277"/>
                <member segment="1278"/>
                <member segment="1279"/>
                <member segment="1280"/>
                <member segment="1281"/>
                <member segment="1282"/>
                <member segment="1283"/>
                <member segment="1284"/>
                <member segment="1285"/>
                <member segment="1286"/>
                <member segment="1287"/>
                <member segment="1288"/>
                <member segment="1289"/>
                <member segment="1290"/>
                <member segment="1291"/>
                <member segment="1292"/>
                <member segment="1293"/>
                <member segment="1294"/>
                <member segment="1295"/>
                <member segment="1296"/>
                <member segment="1297"/>
                <member segment="1298"/>
                <member segment="1299"/>
                <member segment="1300"/>
                <member segment="1301"/>
                <member segment="1302"/>
                <member segment="1303"/>
                <member segment="1304"/>
                <member segment="1305"/>
            </segmentGroup>
            <segmentGroup id="dend_27" neuroLexId="sao864921383">
                <notes>This group contains an unbranched set of segments, and all of the segmentGroups marked with
             neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
             These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
                <property tag="numberInternalDivisions" value="9"/>
                <annotation>
                    <property xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:xs="http://www.w3.org/2001/XMLSchema" tag="numberInternalDivisions" value="9"/> 
        
                
                </annotation>
                <member segment="1038"/>
                <member segment="1039"/>
                <member segment="1040"/>
                <member segment="1041"/>
                <member segment="1042"/>
                <member segment="1043"/>
                <member segment="1044"/>
                <member segment="1045"/>
                <member segment="1046"/>
                <member segment="1047"/>
                <member segment="1048"/>
                <member segment="1049"/>
                <member segment="1050"/>
                <member segment="1051"/>
                <member segment="1052"/>
                <member segment="1053"/>
                <member segment="1054"/>
                <member segment="1055"/>
                <member segment="1056"/>
                <member segment="1057"/>
                <member segment="1058"/>
                <member segment="1059"/>
                <member segment="1060"/>
                <member segment="1061"/>
                <member segment="1062"/>
                <member segment="1063"/>
                <member segment="1064"/>
                <member segment="1065"/>
                <member segment="1066"/>
                <member segment="1067"/>
                <member segment="1068"/>
                <member segment="1069"/>
                <member segment="1070"/>
                <member segment="1071"/>
                <member segment="1072"/>
                <member segment="1073"/>
                <member segment="1074"/>
                <member segment="1075"/>
                <member segment="1076"/>
                <member segment="1077"/>
                <member segment="1078"/>
                <member segment="1079"/>
                <member segment="1080"/>
                <member segment="1081"/>
                <member segment="1082"/>
                <member segment="1083"/>
                <member segment="1084"/>
                <member segment="1085"/>
                <member segment="1086"/>
                <member segment="1087"/>
                <member segment="1088"/>
                <member segment="1089"/>
                <member segment="1090"/>
                <member segment="1091"/>
                <member segment="1092"/>
                <member segment="1093"/>
                <member segment="1094"/>
                <member segment="1095"/>
                <member segment="1096"/>
                <member segment="1097"/>
                <member segment="1098"/>
                <member segment="1099"/>
                <member segment="1100"/>
                <member segment="1101"/>
                <member segment="1102"/>
                <member segment="1103"/>
                <member segment="1104"/>
                <member segment="1105"/>
                <member segment="1106"/>
                <member segment="1107"/>
                <member segment="1108"/>
                <member segment="1109"/>
                <member segment="1110"/>
                <member segment="1111"/>
                <member segment="1112"/>
                <member segment="1113"/>
                <member segment="1114"/>
                <member segment="1115"/>
                <member segment="1116"/>
                <member segment="1117"/>
                <member segment="1118"/>
                <member segment="1119"/>
                <member segment="1120"/>
                <member segment="1121"/>
                <member segment="1122"/>
                <member segment="1123"/>
                <member segment="1124"/>
                <member segment="1125"/>
                <member segment="1126"/>
                <member segment="1127"/>
                <member segment="1128"/>
                <member segment="1129"/>
                <member segment="1130"/>
                <member segment="1131"/>
                <member segment="1132"/>
                <member segment="1133"/>
                <member segment="1134"/>
                <member segment="1135"/>
                <member segment="1136"/>
                <member segment="1137"/>
                <member segment="1138"/>
                <member segment="1139"/>
                <member segment="1140"/>
                <member segment="1141"/>
                <member segment="1142"/>
                <member segment="1143"/>
                <member segment="1144"/>
                <member segment="1145"/>
                <member segment="1146"/>
                <member segment="1147"/>
                <member segment="1148"/>
                <member segment="1149"/>
                <member segment="1150"/>
                <member segment="1151"/>
                <member segment="1152"/>
                <member segment="1153"/>
                <member segment="1154"/>
                <member segment="1155"/>
                <member segment="1156"/>
                <member segment="1157"/>
                <member segment="1158"/>
                <member segment="1159"/>
                <member segment="1160"/>
                <member segment="1161"/>
                <member segment="1162"/>
                <member segment="1163"/>
                <member segment="1164"/>
                <member segment="1165"/>
                <member segment="1166"/>
                <member segment="1167"/>
                <member segment="1168"/>
                <member segment="1169"/>
                <member segment="1170"/>
                <member segment="1171"/>
                <member segment="1172"/>
                <member segment="1173"/>
                <member segment="1174"/>
                <member segment="1175"/>
                <member segment="1176"/>
                <member segment="1177"/>
                <member segment="1178"/>
                <member segment="1179"/>
                <member segment="1180"/>
                <member segment="1181"/>
                <member segment="1182"/>
                <member segment="1183"/>
                <member segment="1184"/>
            </segmentGroup>
            <segmentGroup id="soma_group" neuroLexId="GO:0043025">
                <notes>Default soma segment group for the cell</notes>
                <include segmentGroup="soma_0"/>
            </segmentGroup>
            <segmentGroup id="axon_group" neuroLexId="GO:0030424">
                <notes>Default axon segment group for the cell</notes>
                <include segmentGroup="axon_0"/>
                <include segmentGroup="axon_1"/>
            </segmentGroup>
            <segmentGroup id="dendrite_group" neuroLexId="GO:0030425">
                <notes>Default dendrite segment group for the cell</notes>
                <include segmentGroup="dend_0"/>
                <include segmentGroup="dend_1"/>
                <include segmentGroup="dend_2"/>
                <include segmentGroup="dend_3"/>
                <include segmentGroup="dend_4"/>
                <include segmentGroup="dend_5"/>
                <include segmentGroup="dend_6"/>
                <include segmentGroup="dend_7"/>
                <include segmentGroup="dend_8"/>
                <include segmentGroup="dend_9"/>
                <include segmentGroup="dend_10"/>
                <include segmentGroup="dend_11"/>
                <include segmentGroup="dend_12"/>
                <include segmentGroup="dend_13"/>
                <include segmentGroup="dend_14"/>
                <include segmentGroup="dend_15"/>
                <include segmentGroup="dend_16"/>
                <include segmentGroup="dend_17"/>
                <include segmentGroup="dend_18"/>
                <include segmentGroup="dend_19"/>
                <include segmentGroup="dend_20"/>
                <include segmentGroup="dend_21"/>
                <include segmentGroup="dend_22"/>
                <include segmentGroup="dend_23"/>
                <include segmentGroup="dend_24"/>
                <include segmentGroup="dend_25"/>
                <include segmentGroup="dend_26"/>
                <include segmentGroup="dend_27"/>
                <include segmentGroup="dend_28"/>
                <include segmentGroup="dend_29"/>
                <include segmentGroup="dend_30"/>
                <include segmentGroup="dend_31"/>
                <include segmentGroup="dend_32"/>
                <include segmentGroup="dend_33"/>
                <include segmentGroup="dend_34"/>
                <include segmentGroup="dend_35"/>
                <include segmentGroup="dend_36"/>
                <include segmentGroup="dend_37"/>
                <include segmentGroup="dend_38"/>
                <include segmentGroup="dend_39"/>
                <include segmentGroup="dend_40"/>
                <include segmentGroup="dend_41"/>
                <include segmentGroup="dend_42"/>
                <include segmentGroup="dend_43"/>
                <include segmentGroup="dend_44"/>
                <include segmentGroup="dend_45"/>
                <include segmentGroup="dend_46"/>
                <include segmentGroup="dend_47"/>
                <include segmentGroup="dend_48"/>
                <include segmentGroup="dend_49"/>
                <include segmentGroup="dend_50"/>
                <include segmentGroup="dend_51"/>
                <include segmentGroup="dend_52"/>
            </segmentGroup>
            <segmentGroup id="all">
                <include segmentGroup="axon_0"/>
                <include segmentGroup="axon_1"/>
                <include segmentGroup="dend_0"/>
                <include segmentGroup="dend_1"/>
                <include segmentGroup="dend_2"/>
                <include segmentGroup="dend_3"/>
                <include segmentGroup="dend_4"/>
                <include segmentGroup="dend_5"/>
                <include segmentGroup="dend_6"/>
                <include segmentGroup="dend_7"/>
                <include segmentGroup="dend_8"/>
                <include segmentGroup="dend_9"/>
                <include segmentGroup="dend_10"/>
                <include segmentGroup="dend_11"/>
                <include segmentGroup="dend_12"/>
                <include segmentGroup="dend_13"/>
                <include segmentGroup="dend_14"/>
                <include segmentGroup="dend_15"/>
                <include segmentGroup="dend_16"/>
                <include segmentGroup="dend_17"/>
                <include segmentGroup="dend_18"/>
                <include segmentGroup="dend_19"/>
                <include segmentGroup="dend_20"/>
                <include segmentGroup="dend_21"/>
                <include segmentGroup="dend_22"/>
                <include segmentGroup="dend_23"/>
                <include segmentGroup="dend_24"/>
                <include segmentGroup="dend_25"/>
                <include segmentGroup="dend_26"/>
                <include segmentGroup="dend_27"/>
                <include segmentGroup="dend_28"/>
                <include segmentGroup="dend_29"/>
                <include segmentGroup="dend_30"/>
                <include segmentGroup="dend_31"/>
                <include segmentGroup="dend_32"/>
                <include segmentGroup="dend_33"/>
                <include segmentGroup="dend_34"/>
                <include segmentGroup="dend_35"/>
                <include segmentGroup="dend_36"/>
                <include segmentGroup="dend_37"/>
                <include segmentGroup="dend_38"/>
                <include segmentGroup="dend_39"/>
                <include segmentGroup="dend_40"/>
                <include segmentGroup="dend_41"/>
                <include segmentGroup="dend_42"/>
                <include segmentGroup="dend_43"/>
                <include segmentGroup="dend_44"/>
                <include segmentGroup="dend_45"/>
                <include segmentGroup="dend_46"/>
                <include segmentGroup="dend_47"/>
                <include segmentGroup="dend_48"/>
                <include segmentGroup="dend_49"/>
                <include segmentGroup="dend_50"/>
                <include segmentGroup="dend_51"/>
                <include segmentGroup="dend_52"/>
                <include segmentGroup="soma_0"/>
            </segmentGroup>
        </morphology>
        <biophysicalProperties id="biophys">
            <membraneProperties>
                <channelDensity id="pas" ionChannel="pas" condDensity="2.5756438955642182e-05 S_per_cm2" erev="-79.74132024971513 mV" ion="non_specific"/>
                <channelDensity id="Ih" ionChannel="Ih" condDensity="4.274951616063423e-05 S_per_cm2" erev="-45 mV" ion="hcn"/>
                <channelDensity id="NaTg_somatic" ionChannel="NaTg_VIP_somatic" condDensity="0.11491205828369114 S_per_cm2" erev="50 mV" segmentGroup="soma_group" ion="na"/>
                <channelDensity id="Nap_somatic" ionChannel="Nap" condDensity="0.0001895305240694194 S_per_cm2" erev="50 mV" segmentGroup="soma_group" ion="na"/>
                <channelDensity id="K_P_somatic" ionChannel="K_P" condDensity="0.0009925418924114282 S_per_cm2" erev="-85 mV" segmentGroup="soma_group" ion="k"/>
                <channelDensity id="K_T_somatic" ionChannel="K_T" condDensity="0.009051981253674193 S_per_cm2" erev="-85 mV" segmentGroup="soma_group" ion="k"/>
                <channelDensity id="Kv3_1_somatic" ionChannel="Kv3_1" condDensity="0.31215653649208114 S_per_cm2" erev="-85 mV" segmentGroup="soma_group" ion="k"/>
                <channelDensity id="Im_somatic" ionChannel="Im" condDensity="0.0003679378262289559 S_per_cm2" erev="-85 mV" segmentGroup="soma_group" ion="k"/>
                <channelDensity id="SK_somatic" ionChannel="SK" condDensity="0.1655502166633749 S_per_cm2" erev="-85 mV" segmentGroup="soma_group" ion="k"/>
                <channelDensity id="NaTg_axonal" ionChannel="NaTg_VIP_axonal" condDensity="0.20112200814143477 S_per_cm2" erev="50 mV" segmentGroup="axon_group" ion="na"/>
                <channelDensity id="Nap_axonal" ionChannel="Nap" condDensity="0.0006248906854665301 S_per_cm2" erev="50 mV" segmentGroup="axon_group" ion="na"/>
                <channelDensity id="K_P_axonal" ionChannel="K_P" condDensity="0.26489876414660096 S_per_cm2" erev="-85 mV" segmentGroup="axon_group" ion="k"/>
                <channelDensity id="K_T_axonal" ionChannel="K_T" condDensity="0.014364427062274185 S_per_cm2" erev="-85 mV" segmentGroup="axon_group" ion="k"/>
                <channelDensity id="Kv3_1_axonal" ionChannel="Kv3_1" condDensity="0.0011201608191112877 S_per_cm2" erev="-85 mV" segmentGroup="axon_group" ion="k"/>
                <channelDensity id="Im_axonal" ionChannel="Im" condDensity="0.00013891465461042372 S_per_cm2" erev="-85 mV" segmentGroup="axon_group" ion="k"/>
                <channelDensity id="SK_axonal" ionChannel="SK" condDensity="0.7027792087501376 S_per_cm2" erev="-85 mV" segmentGroup="axon_group" ion="k"/>
                <channelDensity id="TonicInhibition" ionChannel="TonicPavlov2009" condDensity="0.000938 S_per_cm2" erev="-75 mV" ion="non_specific"/>
                <channelDensityNernst id="Ca_HVA_somatic" ionChannel="Ca_HVA" condDensity="4.384846294634834e-05 S_per_cm2" segmentGroup="soma_group" ion="ca"/>
                <channelDensityNernst id="Ca_LVA_somatic" ionChannel="Ca_LVA" condDensity="0.0034472458995879864 S_per_cm2" segmentGroup="soma_group" ion="ca"/>
                <channelDensityNernst id="Ca_HVA_axonal" ionChannel="Ca_HVA" condDensity="2.819397237794038e-05 S_per_cm2" segmentGroup="axon_group" ion="ca"/>
                <channelDensityNernst id="Ca_LVA_axonal" ionChannel="Ca_LVA" condDensity="0.010354001513952075 S_per_cm2" segmentGroup="axon_group" ion="ca"/>
                <specificCapacitance value="2 uF_per_cm2"/>
                <initMembPotential value="-80mV"/>
            </membraneProperties>
            <intracellularProperties>
                <species id="ca" concentrationModel="CaDynamics_E2_NML2_VIP_somatic" ion="ca" initialConcentration="1e-4 mM" initialExtConcentration="2.0E-6 mol_per_cm3" segmentGroup="soma_group"/>
                <species id="ca" concentrationModel="CaDynamics_E2_NML2_VIP_axonal" ion="ca" initialConcentration="1e-4 mM" initialExtConcentration="2.0E-6 mol_per_cm3" segmentGroup="axon_group"/>
                <resistivity value="0.1 kohm_cm"/>
            </intracellularProperties>
        </biophysicalProperties>
    </cell>
</neuroml>