HL23PYR_151.cell.nml 1.6 MB

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  3. <notes>Cell: HL23PYR exported from NEURON ModelView. Reference: Yao, H. K.; Guet-McCreight, A.; Mazza, F.; Moradi Chameh, H.; Prevot, T. D.; Griffiths, J. D.; Tripathy, S. J.; Valiante, T. A.; Sibille, E. &amp; Hay, E. Reduced inhibition in depression impairs stimulus processing in human cortical microcircuits Cell Reports, Elsevier, 2022, 38</notes>
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  23536. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
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  23562. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
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  23614. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  23615. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  23620. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  23621. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  23798. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  23820. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  24113. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  24114. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  24117. <property xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:xs="http://www.w3.org/2001/XMLSchema" tag="numberInternalDivisions" value="7"/>
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  24249. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  24250. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  24358. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  24359. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  24487. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  24488. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  24605. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  24618. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  24619. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  24742. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  24743. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  24860. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  24861. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  24983. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  24984. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  25047. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  25048. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  25061. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  25062. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  25251. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  25252. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  25358. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
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  25448. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  25449. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  25549. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  25560. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  25857. <notes>This group contains an unbranched set of segments, and all of the segmentGroups marked with
  25858. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  25859. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  25867. <notes>This group contains an unbranched set of segments, and all of the segmentGroups marked with
  25868. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  25869. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  26012. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  26013. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  26133. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  26134. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  26177. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  27072. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
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  27096. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  27118. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  29210. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  29777. <member segment="2895"/>
  29778. <member segment="2896"/>
  29779. <member segment="2897"/>
  29780. <member segment="2898"/>
  29781. <member segment="2899"/>
  29782. <member segment="2900"/>
  29783. <member segment="2901"/>
  29784. <member segment="2902"/>
  29785. <member segment="2903"/>
  29786. <member segment="2904"/>
  29787. <member segment="2905"/>
  29788. <member segment="2906"/>
  29789. <member segment="2907"/>
  29790. <member segment="2908"/>
  29791. <member segment="2909"/>
  29792. <member segment="2910"/>
  29793. <member segment="2911"/>
  29794. <member segment="2912"/>
  29795. <member segment="2913"/>
  29796. <member segment="2914"/>
  29797. <member segment="2915"/>
  29798. <member segment="2916"/>
  29799. <member segment="2917"/>
  29800. <member segment="2918"/>
  29801. <member segment="2919"/>
  29802. <member segment="2920"/>
  29803. <member segment="2921"/>
  29804. <member segment="2922"/>
  29805. <member segment="2923"/>
  29806. <member segment="2924"/>
  29807. <member segment="2925"/>
  29808. <member segment="2926"/>
  29809. <member segment="2927"/>
  29810. <member segment="2928"/>
  29811. <member segment="2929"/>
  29812. <member segment="2930"/>
  29813. <member segment="2931"/>
  29814. <member segment="2932"/>
  29815. <member segment="2933"/>
  29816. <member segment="2934"/>
  29817. <member segment="2935"/>
  29818. <member segment="2936"/>
  29819. <member segment="2937"/>
  29820. <member segment="2938"/>
  29821. <member segment="2939"/>
  29822. <member segment="2940"/>
  29823. <member segment="2941"/>
  29824. <member segment="2942"/>
  29825. <member segment="2943"/>
  29826. </segmentGroup>
  29827. <segmentGroup id="apic_22" neuroLexId="sao864921383">
  29828. <notes>This group contains an unbranched set of segments, and all of the segmentGroups marked with
  29829. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  29830. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
  29831. <property tag="numberInternalDivisions" value="7"/>
  29832. <annotation>
  29833. <property xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:xs="http://www.w3.org/2001/XMLSchema" tag="numberInternalDivisions" value="7"/>
  29834. </annotation>
  29835. <member segment="2703"/>
  29836. <member segment="2704"/>
  29837. <member segment="2705"/>
  29838. <member segment="2706"/>
  29839. <member segment="2707"/>
  29840. <member segment="2708"/>
  29841. <member segment="2709"/>
  29842. <member segment="2710"/>
  29843. <member segment="2711"/>
  29844. <member segment="2712"/>
  29845. <member segment="2713"/>
  29846. <member segment="2714"/>
  29847. <member segment="2715"/>
  29848. <member segment="2716"/>
  29849. <member segment="2717"/>
  29850. <member segment="2718"/>
  29851. <member segment="2719"/>
  29852. <member segment="2720"/>
  29853. <member segment="2721"/>
  29854. <member segment="2722"/>
  29855. <member segment="2723"/>
  29856. <member segment="2724"/>
  29857. <member segment="2725"/>
  29858. <member segment="2726"/>
  29859. <member segment="2727"/>
  29860. <member segment="2728"/>
  29861. <member segment="2729"/>
  29862. <member segment="2730"/>
  29863. <member segment="2731"/>
  29864. <member segment="2732"/>
  29865. <member segment="2733"/>
  29866. <member segment="2734"/>
  29867. <member segment="2735"/>
  29868. <member segment="2736"/>
  29869. <member segment="2737"/>
  29870. <member segment="2738"/>
  29871. <member segment="2739"/>
  29872. <member segment="2740"/>
  29873. <member segment="2741"/>
  29874. <member segment="2742"/>
  29875. <member segment="2743"/>
  29876. <member segment="2744"/>
  29877. <member segment="2745"/>
  29878. <member segment="2746"/>
  29879. <member segment="2747"/>
  29880. <member segment="2748"/>
  29881. <member segment="2749"/>
  29882. <member segment="2750"/>
  29883. <member segment="2751"/>
  29884. <member segment="2752"/>
  29885. <member segment="2753"/>
  29886. <member segment="2754"/>
  29887. <member segment="2755"/>
  29888. <member segment="2756"/>
  29889. <member segment="2757"/>
  29890. <member segment="2758"/>
  29891. <member segment="2759"/>
  29892. <member segment="2760"/>
  29893. <member segment="2761"/>
  29894. <member segment="2762"/>
  29895. <member segment="2763"/>
  29896. <member segment="2764"/>
  29897. <member segment="2765"/>
  29898. <member segment="2766"/>
  29899. <member segment="2767"/>
  29900. <member segment="2768"/>
  29901. <member segment="2769"/>
  29902. <member segment="2770"/>
  29903. <member segment="2771"/>
  29904. <member segment="2772"/>
  29905. <member segment="2773"/>
  29906. <member segment="2774"/>
  29907. <member segment="2775"/>
  29908. <member segment="2776"/>
  29909. <member segment="2777"/>
  29910. <member segment="2778"/>
  29911. <member segment="2779"/>
  29912. <member segment="2780"/>
  29913. <member segment="2781"/>
  29914. <member segment="2782"/>
  29915. <member segment="2783"/>
  29916. <member segment="2784"/>
  29917. <member segment="2785"/>
  29918. <member segment="2786"/>
  29919. <member segment="2787"/>
  29920. <member segment="2788"/>
  29921. <member segment="2789"/>
  29922. <member segment="2790"/>
  29923. <member segment="2791"/>
  29924. <member segment="2792"/>
  29925. <member segment="2793"/>
  29926. <member segment="2794"/>
  29927. <member segment="2795"/>
  29928. <member segment="2796"/>
  29929. <member segment="2797"/>
  29930. <member segment="2798"/>
  29931. <member segment="2799"/>
  29932. <member segment="2800"/>
  29933. <member segment="2801"/>
  29934. <member segment="2802"/>
  29935. <member segment="2803"/>
  29936. <member segment="2804"/>
  29937. <member segment="2805"/>
  29938. <member segment="2806"/>
  29939. <member segment="2807"/>
  29940. <member segment="2808"/>
  29941. <member segment="2809"/>
  29942. <member segment="2810"/>
  29943. <member segment="2811"/>
  29944. <member segment="2812"/>
  29945. <member segment="2813"/>
  29946. <member segment="2814"/>
  29947. <member segment="2815"/>
  29948. <member segment="2816"/>
  29949. <member segment="2817"/>
  29950. <member segment="2818"/>
  29951. <member segment="2819"/>
  29952. <member segment="2820"/>
  29953. <member segment="2821"/>
  29954. <member segment="2822"/>
  29955. <member segment="2823"/>
  29956. <member segment="2824"/>
  29957. <member segment="2825"/>
  29958. <member segment="2826"/>
  29959. <member segment="2827"/>
  29960. <member segment="2828"/>
  29961. <member segment="2829"/>
  29962. <member segment="2830"/>
  29963. <member segment="2831"/>
  29964. <member segment="2832"/>
  29965. <member segment="2833"/>
  29966. <member segment="2834"/>
  29967. </segmentGroup>
  29968. <segmentGroup id="basal_dendrite_group" neuroLexId="GO:0030425">
  29969. <notes>Basal dendrites</notes>
  29970. <include segmentGroup="dend_0"/>
  29971. <include segmentGroup="dend_1"/>
  29972. <include segmentGroup="dend_2"/>
  29973. <include segmentGroup="dend_3"/>
  29974. <include segmentGroup="dend_4"/>
  29975. <include segmentGroup="dend_5"/>
  29976. <include segmentGroup="dend_6"/>
  29977. <include segmentGroup="dend_7"/>
  29978. <include segmentGroup="dend_8"/>
  29979. <include segmentGroup="dend_9"/>
  29980. <include segmentGroup="dend_10"/>
  29981. <include segmentGroup="dend_11"/>
  29982. <include segmentGroup="dend_12"/>
  29983. <include segmentGroup="dend_13"/>
  29984. <include segmentGroup="dend_14"/>
  29985. <include segmentGroup="dend_15"/>
  29986. <include segmentGroup="dend_16"/>
  29987. <include segmentGroup="dend_17"/>
  29988. <include segmentGroup="dend_18"/>
  29989. <include segmentGroup="dend_19"/>
  29990. <include segmentGroup="dend_20"/>
  29991. <include segmentGroup="dend_21"/>
  29992. <include segmentGroup="dend_22"/>
  29993. <include segmentGroup="dend_23"/>
  29994. <include segmentGroup="dend_24"/>
  29995. <include segmentGroup="dend_25"/>
  29996. <include segmentGroup="dend_26"/>
  29997. <include segmentGroup="dend_27"/>
  29998. <include segmentGroup="dend_28"/>
  29999. <include segmentGroup="dend_29"/>
  30000. </segmentGroup>
  30001. <segmentGroup id="apical_dendrite_group" neuroLexId="GO:0030425">
  30002. <notes>Apical dendrite_group</notes>
  30003. <include segmentGroup="apic_0"/>
  30004. <include segmentGroup="apic_1"/>
  30005. <include segmentGroup="apic_2"/>
  30006. <include segmentGroup="apic_3"/>
  30007. <include segmentGroup="apic_4"/>
  30008. <include segmentGroup="apic_5"/>
  30009. <include segmentGroup="apic_6"/>
  30010. <include segmentGroup="apic_7"/>
  30011. <include segmentGroup="apic_8"/>
  30012. <include segmentGroup="apic_9"/>
  30013. <include segmentGroup="apic_10"/>
  30014. <include segmentGroup="apic_11"/>
  30015. <include segmentGroup="apic_12"/>
  30016. <include segmentGroup="apic_13"/>
  30017. <include segmentGroup="apic_14"/>
  30018. <include segmentGroup="apic_15"/>
  30019. <include segmentGroup="apic_16"/>
  30020. <include segmentGroup="apic_17"/>
  30021. <include segmentGroup="apic_18"/>
  30022. <include segmentGroup="apic_19"/>
  30023. <include segmentGroup="apic_20"/>
  30024. <include segmentGroup="apic_21"/>
  30025. <include segmentGroup="apic_22"/>
  30026. <include segmentGroup="apic_23"/>
  30027. <include segmentGroup="apic_24"/>
  30028. <include segmentGroup="apic_25"/>
  30029. <include segmentGroup="apic_26"/>
  30030. <include segmentGroup="apic_27"/>
  30031. <include segmentGroup="apic_28"/>
  30032. <include segmentGroup="apic_29"/>
  30033. <include segmentGroup="apic_30"/>
  30034. <include segmentGroup="apic_31"/>
  30035. <include segmentGroup="apic_32"/>
  30036. <include segmentGroup="apic_33"/>
  30037. <include segmentGroup="apic_34"/>
  30038. <include segmentGroup="apic_35"/>
  30039. <include segmentGroup="apic_36"/>
  30040. <include segmentGroup="apic_37"/>
  30041. <include segmentGroup="apic_38"/>
  30042. <include segmentGroup="apic_39"/>
  30043. <include segmentGroup="apic_40"/>
  30044. <include segmentGroup="apic_41"/>
  30045. <include segmentGroup="apic_42"/>
  30046. <include segmentGroup="apic_43"/>
  30047. <include segmentGroup="apic_44"/>
  30048. <include segmentGroup="apic_45"/>
  30049. <include segmentGroup="apic_46"/>
  30050. <include segmentGroup="apic_47"/>
  30051. <include segmentGroup="apic_48"/>
  30052. <include segmentGroup="apic_49"/>
  30053. <include segmentGroup="apic_50"/>
  30054. <include segmentGroup="apic_51"/>
  30055. <include segmentGroup="apic_52"/>
  30056. <include segmentGroup="apic_53"/>
  30057. <include segmentGroup="apic_54"/>
  30058. <include segmentGroup="apic_55"/>
  30059. <include segmentGroup="apic_56"/>
  30060. <include segmentGroup="apic_57"/>
  30061. <inhomogeneousParameter id="PathLengthOverApicDends" variable="p" metric="Path Length from root">
  30062. <proximal translationStart="0.0"/>
  30063. </inhomogeneousParameter>
  30064. </segmentGroup>
  30065. <segmentGroup id="myelin_group">
  30066. <notes>Myelin group</notes>
  30067. <include segmentGroup="myelin_0"/>
  30068. </segmentGroup>
  30069. <segmentGroup id="all_minus_myelin">
  30070. <notes>All without myelin</notes>
  30071. <include segmentGroup="apic_0"/>
  30072. <include segmentGroup="apic_1"/>
  30073. <include segmentGroup="apic_2"/>
  30074. <include segmentGroup="apic_3"/>
  30075. <include segmentGroup="apic_4"/>
  30076. <include segmentGroup="apic_5"/>
  30077. <include segmentGroup="apic_6"/>
  30078. <include segmentGroup="apic_7"/>
  30079. <include segmentGroup="apic_8"/>
  30080. <include segmentGroup="apic_9"/>
  30081. <include segmentGroup="apic_10"/>
  30082. <include segmentGroup="apic_11"/>
  30083. <include segmentGroup="apic_12"/>
  30084. <include segmentGroup="apic_13"/>
  30085. <include segmentGroup="apic_14"/>
  30086. <include segmentGroup="apic_15"/>
  30087. <include segmentGroup="apic_16"/>
  30088. <include segmentGroup="apic_17"/>
  30089. <include segmentGroup="apic_18"/>
  30090. <include segmentGroup="apic_19"/>
  30091. <include segmentGroup="apic_20"/>
  30092. <include segmentGroup="apic_21"/>
  30093. <include segmentGroup="apic_22"/>
  30094. <include segmentGroup="apic_23"/>
  30095. <include segmentGroup="apic_24"/>
  30096. <include segmentGroup="apic_25"/>
  30097. <include segmentGroup="apic_26"/>
  30098. <include segmentGroup="apic_27"/>
  30099. <include segmentGroup="apic_28"/>
  30100. <include segmentGroup="apic_29"/>
  30101. <include segmentGroup="apic_30"/>
  30102. <include segmentGroup="apic_31"/>
  30103. <include segmentGroup="apic_32"/>
  30104. <include segmentGroup="apic_33"/>
  30105. <include segmentGroup="apic_34"/>
  30106. <include segmentGroup="apic_35"/>
  30107. <include segmentGroup="apic_36"/>
  30108. <include segmentGroup="apic_37"/>
  30109. <include segmentGroup="apic_38"/>
  30110. <include segmentGroup="apic_39"/>
  30111. <include segmentGroup="apic_40"/>
  30112. <include segmentGroup="apic_41"/>
  30113. <include segmentGroup="apic_42"/>
  30114. <include segmentGroup="apic_43"/>
  30115. <include segmentGroup="apic_44"/>
  30116. <include segmentGroup="apic_45"/>
  30117. <include segmentGroup="apic_46"/>
  30118. <include segmentGroup="apic_47"/>
  30119. <include segmentGroup="apic_48"/>
  30120. <include segmentGroup="apic_49"/>
  30121. <include segmentGroup="apic_50"/>
  30122. <include segmentGroup="apic_51"/>
  30123. <include segmentGroup="apic_52"/>
  30124. <include segmentGroup="apic_53"/>
  30125. <include segmentGroup="apic_54"/>
  30126. <include segmentGroup="apic_55"/>
  30127. <include segmentGroup="apic_56"/>
  30128. <include segmentGroup="apic_57"/>
  30129. <include segmentGroup="axon_0"/>
  30130. <include segmentGroup="axon_1"/>
  30131. <include segmentGroup="dend_0"/>
  30132. <include segmentGroup="dend_1"/>
  30133. <include segmentGroup="dend_2"/>
  30134. <include segmentGroup="dend_3"/>
  30135. <include segmentGroup="dend_4"/>
  30136. <include segmentGroup="dend_5"/>
  30137. <include segmentGroup="dend_6"/>
  30138. <include segmentGroup="dend_7"/>
  30139. <include segmentGroup="dend_8"/>
  30140. <include segmentGroup="dend_9"/>
  30141. <include segmentGroup="dend_10"/>
  30142. <include segmentGroup="dend_11"/>
  30143. <include segmentGroup="dend_12"/>
  30144. <include segmentGroup="dend_13"/>
  30145. <include segmentGroup="dend_14"/>
  30146. <include segmentGroup="dend_15"/>
  30147. <include segmentGroup="dend_16"/>
  30148. <include segmentGroup="dend_17"/>
  30149. <include segmentGroup="dend_18"/>
  30150. <include segmentGroup="dend_19"/>
  30151. <include segmentGroup="dend_20"/>
  30152. <include segmentGroup="dend_21"/>
  30153. <include segmentGroup="dend_22"/>
  30154. <include segmentGroup="dend_23"/>
  30155. <include segmentGroup="dend_24"/>
  30156. <include segmentGroup="dend_25"/>
  30157. <include segmentGroup="dend_26"/>
  30158. <include segmentGroup="dend_27"/>
  30159. <include segmentGroup="dend_28"/>
  30160. <include segmentGroup="dend_29"/>
  30161. <include segmentGroup="soma_0"/>
  30162. </segmentGroup>
  30163. <segmentGroup id="soma_group" neuroLexId="GO:0043025">
  30164. <notes>Default soma segment group for the cell</notes>
  30165. <include segmentGroup="soma_0"/>
  30166. </segmentGroup>
  30167. <segmentGroup id="axon_group" neuroLexId="GO:0030424">
  30168. <notes>Default axon segment group for the cell</notes>
  30169. <include segmentGroup="axon_0"/>
  30170. <include segmentGroup="axon_1"/>
  30171. </segmentGroup>
  30172. <segmentGroup id="dendrite_group" neuroLexId="GO:0030425">
  30173. <notes>Default dendrite segment group for the cell</notes>
  30174. <include segmentGroup="apical_dendrite_group"/>
  30175. <include segmentGroup="basal_dendrite_group"/>
  30176. </segmentGroup>
  30177. <segmentGroup id="all">
  30178. <include segmentGroup="apic_0"/>
  30179. <include segmentGroup="apic_1"/>
  30180. <include segmentGroup="apic_2"/>
  30181. <include segmentGroup="apic_3"/>
  30182. <include segmentGroup="apic_4"/>
  30183. <include segmentGroup="apic_5"/>
  30184. <include segmentGroup="apic_6"/>
  30185. <include segmentGroup="apic_7"/>
  30186. <include segmentGroup="apic_8"/>
  30187. <include segmentGroup="apic_9"/>
  30188. <include segmentGroup="apic_10"/>
  30189. <include segmentGroup="apic_11"/>
  30190. <include segmentGroup="apic_12"/>
  30191. <include segmentGroup="apic_13"/>
  30192. <include segmentGroup="apic_14"/>
  30193. <include segmentGroup="apic_15"/>
  30194. <include segmentGroup="apic_16"/>
  30195. <include segmentGroup="apic_17"/>
  30196. <include segmentGroup="apic_18"/>
  30197. <include segmentGroup="apic_19"/>
  30198. <include segmentGroup="apic_20"/>
  30199. <include segmentGroup="apic_21"/>
  30200. <include segmentGroup="apic_22"/>
  30201. <include segmentGroup="apic_23"/>
  30202. <include segmentGroup="apic_24"/>
  30203. <include segmentGroup="apic_25"/>
  30204. <include segmentGroup="apic_26"/>
  30205. <include segmentGroup="apic_27"/>
  30206. <include segmentGroup="apic_28"/>
  30207. <include segmentGroup="apic_29"/>
  30208. <include segmentGroup="apic_30"/>
  30209. <include segmentGroup="apic_31"/>
  30210. <include segmentGroup="apic_32"/>
  30211. <include segmentGroup="apic_33"/>
  30212. <include segmentGroup="apic_34"/>
  30213. <include segmentGroup="apic_35"/>
  30214. <include segmentGroup="apic_36"/>
  30215. <include segmentGroup="apic_37"/>
  30216. <include segmentGroup="apic_38"/>
  30217. <include segmentGroup="apic_39"/>
  30218. <include segmentGroup="apic_40"/>
  30219. <include segmentGroup="apic_41"/>
  30220. <include segmentGroup="apic_42"/>
  30221. <include segmentGroup="apic_43"/>
  30222. <include segmentGroup="apic_44"/>
  30223. <include segmentGroup="apic_45"/>
  30224. <include segmentGroup="apic_46"/>
  30225. <include segmentGroup="apic_47"/>
  30226. <include segmentGroup="apic_48"/>
  30227. <include segmentGroup="apic_49"/>
  30228. <include segmentGroup="apic_50"/>
  30229. <include segmentGroup="apic_51"/>
  30230. <include segmentGroup="apic_52"/>
  30231. <include segmentGroup="apic_53"/>
  30232. <include segmentGroup="apic_54"/>
  30233. <include segmentGroup="apic_55"/>
  30234. <include segmentGroup="apic_56"/>
  30235. <include segmentGroup="apic_57"/>
  30236. <include segmentGroup="axon_0"/>
  30237. <include segmentGroup="axon_1"/>
  30238. <include segmentGroup="dend_0"/>
  30239. <include segmentGroup="dend_1"/>
  30240. <include segmentGroup="dend_2"/>
  30241. <include segmentGroup="dend_3"/>
  30242. <include segmentGroup="dend_4"/>
  30243. <include segmentGroup="dend_5"/>
  30244. <include segmentGroup="dend_6"/>
  30245. <include segmentGroup="dend_7"/>
  30246. <include segmentGroup="dend_8"/>
  30247. <include segmentGroup="dend_9"/>
  30248. <include segmentGroup="dend_10"/>
  30249. <include segmentGroup="dend_11"/>
  30250. <include segmentGroup="dend_12"/>
  30251. <include segmentGroup="dend_13"/>
  30252. <include segmentGroup="dend_14"/>
  30253. <include segmentGroup="dend_15"/>
  30254. <include segmentGroup="dend_16"/>
  30255. <include segmentGroup="dend_17"/>
  30256. <include segmentGroup="dend_18"/>
  30257. <include segmentGroup="dend_19"/>
  30258. <include segmentGroup="dend_20"/>
  30259. <include segmentGroup="dend_21"/>
  30260. <include segmentGroup="dend_22"/>
  30261. <include segmentGroup="dend_23"/>
  30262. <include segmentGroup="dend_24"/>
  30263. <include segmentGroup="dend_25"/>
  30264. <include segmentGroup="dend_26"/>
  30265. <include segmentGroup="dend_27"/>
  30266. <include segmentGroup="dend_28"/>
  30267. <include segmentGroup="dend_29"/>
  30268. <include segmentGroup="myelin_0"/>
  30269. <include segmentGroup="soma_0"/>
  30270. </segmentGroup>
  30271. </morphology>
  30272. <biophysicalProperties id="biophys">
  30273. <membraneProperties>
  30274. <channelDensity id="pas" ionChannel="pas" condDensity="0.0000954 S_per_cm2" erev="-80 mV" segmentGroup="all_minus_myelin" ion="non_specific"/>
  30275. <channelDensity id="SK_somatic" ionChannel="SK" condDensity="0.000853 S_per_cm2" erev="-85 mV" segmentGroup="soma_group" ion="k"/>
  30276. <channelDensity id="K_T_somatic" ionChannel="K_T" condDensity="0.0605 S_per_cm2" erev="-85 mV" segmentGroup="soma_group" ion="k"/>
  30277. <channelDensity id="K_P_somatic" ionChannel="K_P" condDensity="0.000208 S_per_cm2" erev="-85 mV" segmentGroup="soma_group" ion="k"/>
  30278. <channelDensity id="Kv3_1_somatic" ionChannel="Kv3_1" condDensity="0.0424 S_per_cm2" erev="-85 mV" segmentGroup="soma_group" ion="k"/>
  30279. <channelDensity id="Ih_somatic" ionChannel="Ih" condDensity="0.000148 S_per_cm2" erev="-45 mV" segmentGroup="soma_group" ion="hcn"/>
  30280. <channelDensity id="Im_somatic" ionChannel="Im" condDensity="0.000306 S_per_cm2" erev="-85 mV" segmentGroup="soma_group" ion="k"/>
  30281. <channelDensity id="NaTg_somatic" ionChannel="NaTg_PYR_somatic" condDensity="0.272 S_per_cm2" erev="50 mV" segmentGroup="soma_group" ion="na"/>
  30282. <channelDensity id="Ih_basal" ionChannel="Ih" condDensity="0.000000709 S_per_cm2" erev="-45 mV" segmentGroup="basal_dendrite_group" ion="hcn"/>
  30283. <channelDensity id="SK_axonal" ionChannel="SK" condDensity="0.0145 S_per_cm2" erev="-85 mV" segmentGroup="axon_group" ion="k"/>
  30284. <channelDensity id="K_T_axonal" ionChannel="K_T" condDensity="0.0424 S_per_cm2" erev="-85 mV" segmentGroup="axon_group" ion="k"/>
  30285. <channelDensity id="K_P_axonal" ionChannel="K_P" condDensity="0.338 S_per_cm2" erev="-85 mV" segmentGroup="axon_group" ion="k"/>
  30286. <channelDensity id="Im_axonal" ionChannel="Im" condDensity="0.000 S_per_cm2" erev="-85 mV" segmentGroup="axon_group" ion="k"/>
  30287. <channelDensity id="Kv3_1_axonal" ionChannel="Kv3_1" condDensity="0.941 S_per_cm2" erev="-85 mV" segmentGroup="axon_group" ion="k"/>
  30288. <channelDensity id="NaTg_axonal" ionChannel="NaTg_PYR_axonal" condDensity="1.38 S_per_cm2" erev="50 mV" segmentGroup="axon_group" ion="na"/>
  30289. <channelDensity id="Nap_axonal" ionChannel="Nap" condDensity="0.00842 S_per_cm2" erev="50 mV" segmentGroup="axon_group" ion="na"/>
  30290. <channelDensity id="Ih_axonal" ionChannel="Ih" condDensity="0.00001 S_per_cm2" erev="-45 mV" segmentGroup="axon_group" ion="hcn"/>
  30291. <channelDensityNernst id="Ca_HVA_somatic" ionChannel="Ca_HVA" condDensity="0.00155 S_per_cm2" segmentGroup="soma_group" ion="ca"/>
  30292. <channelDensityNernst id="Ca_LVA_somatic" ionChannel="Ca_LVA" condDensity="0.00296 S_per_cm2" segmentGroup="soma_group" ion="ca"/>
  30293. <channelDensityNernst id="Ca_HVA_axonal" ionChannel="Ca_HVA" condDensity="0.0003060000 S_per_cm2" segmentGroup="axon_group" ion="ca"/>
  30294. <channelDensityNernst id="Ca_LVA_axonal" ionChannel="Ca_LVA" condDensity="0.0439000000 S_per_cm2" segmentGroup="axon_group" ion="ca"/>
  30295. <channelDensityNonUniform id="Ih_apical" ionChannel="Ih" erev="-45 mV" ion="hcn">
  30296. <variableParameter parameter="condDensity" segmentGroup="apical_dendrite_group">
  30297. <inhomogeneousValue inhomogeneousParameter="PathLengthOverApicDends" value="1E9 * (0.148 * 1E-8) * ((2.087 * exp( 3.6161 * (p/606.3464))) - 0.8696)"/>
  30298. </variableParameter>
  30299. </channelDensityNonUniform>
  30300. <specificCapacitance value="1 uF_per_cm2" segmentGroup="all_minus_myelin"/>
  30301. <specificCapacitance value="0.02 uF_per_cm2" segmentGroup="myelin_group"/>
  30302. <specificCapacitance value="2 uF_per_cm2" segmentGroup="apical_dendrite_group"/>
  30303. <specificCapacitance value="2 uF_per_cm2" segmentGroup="basal_dendrite_group"/>
  30304. <initMembPotential value="-80mV"/>
  30305. </membraneProperties>
  30306. <intracellularProperties>
  30307. <species id="ca" concentrationModel="CaDynamics_E2_NML2_PYR_somatic" ion="ca" initialConcentration="1e-4 mM" initialExtConcentration="2.0E-6 mol_per_cm3" segmentGroup="soma_group"/>
  30308. <species id="ca" concentrationModel="CaDynamics_E2_NML2_PYR_axonal" ion="ca" initialConcentration="1e-4 mM" initialExtConcentration="2.0E-6 mol_per_cm3" segmentGroup="axon_group"/>
  30309. <resistivity value="0.1 kohm_cm" segmentGroup="all_minus_myelin"/>
  30310. <resistivity value="0.1 kohm_cm" segmentGroup="myelin_group"/>
  30311. </intracellularProperties>
  30312. </biophysicalProperties>
  30313. </cell>
  30314. </neuroml>