Human-L2-3-Cortical-Microcircuit/NeuroML2/rotated_cells/HL23PV_887.cell.nml

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        <notes>Cell: HL23PV exported from NEURON ModelView. Reference: Yao, H. K.; Guet-McCreight, A.; Mazza, F.; Moradi Chameh, H.; Prevot, T. D.; Griffiths, J. D.; Tripathy, S. J.; Valiante, T. A.; Sibille, E. &amp; Hay, E.  Reduced inhibition in depression impairs stimulus processing in human cortical microcircuits Cell Reports, Elsevier, 2022, 38</notes>
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                <member segment="3355"/>
                <member segment="3356"/>
                <member segment="3357"/>
                <member segment="3358"/>
                <member segment="3359"/>
                <member segment="3360"/>
                <member segment="3361"/>
                <member segment="3362"/>
                <member segment="3363"/>
                <member segment="3364"/>
                <member segment="3365"/>
                <member segment="3366"/>
                <member segment="3367"/>
                <member segment="3368"/>
            </segmentGroup>
            <segmentGroup id="dend_37" neuroLexId="sao864921383">
                <notes>This group contains an unbranched set of segments, and all of the segmentGroups marked with
             neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
             These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
                <property tag="numberInternalDivisions" value="9"/>
                <annotation>
                    <property xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:xs="http://www.w3.org/2001/XMLSchema" tag="numberInternalDivisions" value="9"/> 
        
                
                </annotation>
                <member segment="3178"/>
                <member segment="3179"/>
                <member segment="3180"/>
                <member segment="3181"/>
                <member segment="3182"/>
                <member segment="3183"/>
                <member segment="3184"/>
                <member segment="3185"/>
                <member segment="3186"/>
                <member segment="3187"/>
                <member segment="3188"/>
                <member segment="3189"/>
                <member segment="3190"/>
                <member segment="3191"/>
                <member segment="3192"/>
                <member segment="3193"/>
                <member segment="3194"/>
                <member segment="3195"/>
                <member segment="3196"/>
                <member segment="3197"/>
                <member segment="3198"/>
                <member segment="3199"/>
                <member segment="3200"/>
                <member segment="3201"/>
                <member segment="3202"/>
                <member segment="3203"/>
                <member segment="3204"/>
                <member segment="3205"/>
                <member segment="3206"/>
                <member segment="3207"/>
                <member segment="3208"/>
                <member segment="3209"/>
                <member segment="3210"/>
                <member segment="3211"/>
                <member segment="3212"/>
                <member segment="3213"/>
                <member segment="3214"/>
                <member segment="3215"/>
                <member segment="3216"/>
                <member segment="3217"/>
                <member segment="3218"/>
                <member segment="3219"/>
                <member segment="3220"/>
                <member segment="3221"/>
                <member segment="3222"/>
                <member segment="3223"/>
                <member segment="3224"/>
                <member segment="3225"/>
                <member segment="3226"/>
                <member segment="3227"/>
                <member segment="3228"/>
                <member segment="3229"/>
                <member segment="3230"/>
                <member segment="3231"/>
                <member segment="3232"/>
                <member segment="3233"/>
                <member segment="3234"/>
                <member segment="3235"/>
                <member segment="3236"/>
                <member segment="3237"/>
                <member segment="3238"/>
                <member segment="3239"/>
                <member segment="3240"/>
                <member segment="3241"/>
                <member segment="3242"/>
                <member segment="3243"/>
                <member segment="3244"/>
                <member segment="3245"/>
                <member segment="3246"/>
                <member segment="3247"/>
                <member segment="3248"/>
                <member segment="3249"/>
                <member segment="3250"/>
                <member segment="3251"/>
                <member segment="3252"/>
                <member segment="3253"/>
                <member segment="3254"/>
                <member segment="3255"/>
                <member segment="3256"/>
                <member segment="3257"/>
                <member segment="3258"/>
                <member segment="3259"/>
                <member segment="3260"/>
                <member segment="3261"/>
                <member segment="3262"/>
                <member segment="3263"/>
                <member segment="3264"/>
                <member segment="3265"/>
                <member segment="3266"/>
                <member segment="3267"/>
                <member segment="3268"/>
                <member segment="3269"/>
                <member segment="3270"/>
                <member segment="3271"/>
                <member segment="3272"/>
                <member segment="3273"/>
                <member segment="3274"/>
                <member segment="3275"/>
                <member segment="3276"/>
                <member segment="3277"/>
                <member segment="3278"/>
                <member segment="3279"/>
                <member segment="3280"/>
                <member segment="3281"/>
                <member segment="3282"/>
                <member segment="3283"/>
                <member segment="3284"/>
                <member segment="3285"/>
                <member segment="3286"/>
                <member segment="3287"/>
                <member segment="3288"/>
                <member segment="3289"/>
                <member segment="3290"/>
                <member segment="3291"/>
                <member segment="3292"/>
                <member segment="3293"/>
                <member segment="3294"/>
                <member segment="3295"/>
                <member segment="3296"/>
                <member segment="3297"/>
                <member segment="3298"/>
                <member segment="3299"/>
                <member segment="3300"/>
                <member segment="3301"/>
                <member segment="3302"/>
                <member segment="3303"/>
                <member segment="3304"/>
                <member segment="3305"/>
                <member segment="3306"/>
                <member segment="3307"/>
                <member segment="3308"/>
                <member segment="3309"/>
                <member segment="3310"/>
                <member segment="3311"/>
                <member segment="3312"/>
                <member segment="3313"/>
                <member segment="3314"/>
                <member segment="3315"/>
                <member segment="3316"/>
                <member segment="3317"/>
                <member segment="3318"/>
                <member segment="3319"/>
                <member segment="3320"/>
                <member segment="3321"/>
                <member segment="3322"/>
                <member segment="3323"/>
                <member segment="3324"/>
                <member segment="3325"/>
                <member segment="3326"/>
            </segmentGroup>
            <segmentGroup id="soma_group" neuroLexId="GO:0043025">
                <notes>Default soma segment group for the cell</notes>
                <include segmentGroup="soma_0"/>
            </segmentGroup>
            <segmentGroup id="axon_group" neuroLexId="GO:0030424">
                <notes>Default axon segment group for the cell</notes>
                <include segmentGroup="axon_0"/>
                <include segmentGroup="axon_1"/>
            </segmentGroup>
            <segmentGroup id="dendrite_group" neuroLexId="GO:0030425">
                <notes>Default dendrite segment group for the cell</notes>
                <include segmentGroup="dend_0"/>
                <include segmentGroup="dend_1"/>
                <include segmentGroup="dend_2"/>
                <include segmentGroup="dend_3"/>
                <include segmentGroup="dend_4"/>
                <include segmentGroup="dend_5"/>
                <include segmentGroup="dend_6"/>
                <include segmentGroup="dend_7"/>
                <include segmentGroup="dend_8"/>
                <include segmentGroup="dend_9"/>
                <include segmentGroup="dend_10"/>
                <include segmentGroup="dend_11"/>
                <include segmentGroup="dend_12"/>
                <include segmentGroup="dend_13"/>
                <include segmentGroup="dend_14"/>
                <include segmentGroup="dend_15"/>
                <include segmentGroup="dend_16"/>
                <include segmentGroup="dend_17"/>
                <include segmentGroup="dend_18"/>
                <include segmentGroup="dend_19"/>
                <include segmentGroup="dend_20"/>
                <include segmentGroup="dend_21"/>
                <include segmentGroup="dend_22"/>
                <include segmentGroup="dend_23"/>
                <include segmentGroup="dend_24"/>
                <include segmentGroup="dend_25"/>
                <include segmentGroup="dend_26"/>
                <include segmentGroup="dend_27"/>
                <include segmentGroup="dend_28"/>
                <include segmentGroup="dend_29"/>
                <include segmentGroup="dend_30"/>
                <include segmentGroup="dend_31"/>
                <include segmentGroup="dend_32"/>
                <include segmentGroup="dend_33"/>
                <include segmentGroup="dend_34"/>
                <include segmentGroup="dend_35"/>
                <include segmentGroup="dend_36"/>
                <include segmentGroup="dend_37"/>
                <include segmentGroup="dend_38"/>
                <include segmentGroup="dend_39"/>
                <include segmentGroup="dend_40"/>
                <include segmentGroup="dend_41"/>
                <include segmentGroup="dend_42"/>
                <include segmentGroup="dend_43"/>
                <include segmentGroup="dend_44"/>
                <include segmentGroup="dend_45"/>
                <include segmentGroup="dend_46"/>
                <include segmentGroup="dend_47"/>
                <include segmentGroup="dend_48"/>
            </segmentGroup>
            <segmentGroup id="all">
                <include segmentGroup="axon_0"/>
                <include segmentGroup="axon_1"/>
                <include segmentGroup="dend_0"/>
                <include segmentGroup="dend_1"/>
                <include segmentGroup="dend_2"/>
                <include segmentGroup="dend_3"/>
                <include segmentGroup="dend_4"/>
                <include segmentGroup="dend_5"/>
                <include segmentGroup="dend_6"/>
                <include segmentGroup="dend_7"/>
                <include segmentGroup="dend_8"/>
                <include segmentGroup="dend_9"/>
                <include segmentGroup="dend_10"/>
                <include segmentGroup="dend_11"/>
                <include segmentGroup="dend_12"/>
                <include segmentGroup="dend_13"/>
                <include segmentGroup="dend_14"/>
                <include segmentGroup="dend_15"/>
                <include segmentGroup="dend_16"/>
                <include segmentGroup="dend_17"/>
                <include segmentGroup="dend_18"/>
                <include segmentGroup="dend_19"/>
                <include segmentGroup="dend_20"/>
                <include segmentGroup="dend_21"/>
                <include segmentGroup="dend_22"/>
                <include segmentGroup="dend_23"/>
                <include segmentGroup="dend_24"/>
                <include segmentGroup="dend_25"/>
                <include segmentGroup="dend_26"/>
                <include segmentGroup="dend_27"/>
                <include segmentGroup="dend_28"/>
                <include segmentGroup="dend_29"/>
                <include segmentGroup="dend_30"/>
                <include segmentGroup="dend_31"/>
                <include segmentGroup="dend_32"/>
                <include segmentGroup="dend_33"/>
                <include segmentGroup="dend_34"/>
                <include segmentGroup="dend_35"/>
                <include segmentGroup="dend_36"/>
                <include segmentGroup="dend_37"/>
                <include segmentGroup="dend_38"/>
                <include segmentGroup="dend_39"/>
                <include segmentGroup="dend_40"/>
                <include segmentGroup="dend_41"/>
                <include segmentGroup="dend_42"/>
                <include segmentGroup="dend_43"/>
                <include segmentGroup="dend_44"/>
                <include segmentGroup="dend_45"/>
                <include segmentGroup="dend_46"/>
                <include segmentGroup="dend_47"/>
                <include segmentGroup="dend_48"/>
                <include segmentGroup="soma_0"/>
            </segmentGroup>
        </morphology>
        <biophysicalProperties id="biophys">
            <membraneProperties>
                <channelDensity id="pas" ionChannel="pas" condDensity="0.00011830111773572024 S_per_cm2" erev="-83.92924122901199 mV" ion="non_specific"/>
                <channelDensity id="Ih" ionChannel="Ih" condDensity="2.7671764064314368e-05 S_per_cm2" erev="-45 mV" ion="hcn"/>
                <channelDensity id="NaTg_somatic" ionChannel="NaTg_PV" condDensity="0.49958525078702043 S_per_cm2" erev="50 mV" segmentGroup="soma_group" ion="na"/>
                <channelDensity id="Nap_somatic" ionChannel="Nap" condDensity="0.008795461417521086 S_per_cm2" erev="50 mV" segmentGroup="soma_group" ion="na"/>
                <channelDensity id="K_P_somatic" ionChannel="K_P" condDensity="9.606092478937705e-06 S_per_cm2" erev="-85 mV" segmentGroup="soma_group" ion="k"/>
                <channelDensity id="K_T_somatic" ionChannel="K_T" condDensity="0.0011701702607527396 S_per_cm2" erev="-85 mV" segmentGroup="soma_group" ion="k"/>
                <channelDensity id="Kv3_1_somatic" ionChannel="Kv3_1" condDensity="2.9921080101237565 S_per_cm2" erev="-85 mV" segmentGroup="soma_group" ion="k"/>
                <channelDensity id="Im_somatic" ionChannel="Im" condDensity="0.04215865946497755 S_per_cm2" erev="-85 mV" segmentGroup="soma_group" ion="k"/>
                <channelDensity id="SK_somatic" ionChannel="SK" condDensity="3.7265770903193036e-06 S_per_cm2" erev="-85 mV" segmentGroup="soma_group" ion="k"/>
                <channelDensity id="NaTg_axonal" ionChannel="NaTg_PV" condDensity="0.10914576408883477 S_per_cm2" erev="50 mV" segmentGroup="axon_group" ion="na"/>
                <channelDensity id="Nap_axonal" ionChannel="Nap" condDensity="0.001200899579358837 S_per_cm2" erev="50 mV" segmentGroup="axon_group" ion="na"/>
                <channelDensity id="K_P_axonal" ionChannel="K_P" condDensity="0.6854776593761795 S_per_cm2" erev="-85 mV" segmentGroup="axon_group" ion="k"/>
                <channelDensity id="K_T_axonal" ionChannel="K_T" condDensity="0.07603372775662909 S_per_cm2" erev="-85 mV" segmentGroup="axon_group" ion="k"/>
                <channelDensity id="Kv3_1_axonal" ionChannel="Kv3_1" condDensity="2.988867483754507 S_per_cm2" erev="-85 mV" segmentGroup="axon_group" ion="k"/>
                <channelDensity id="Im_axonal" ionChannel="Im" condDensity="0.029587905136596156 S_per_cm2" erev="-85 mV" segmentGroup="axon_group" ion="k"/>
                <channelDensity id="SK_axonal" ionChannel="SK" condDensity="0.5121938998281017 S_per_cm2" erev="-85 mV" segmentGroup="axon_group" ion="k"/>
                <channelDensityNernst id="Ca_HVA_somatic" ionChannel="Ca_HVA" condDensity="0.00017953651378188165 S_per_cm2" segmentGroup="soma_group" ion="ca"/>
                <channelDensityNernst id="Ca_LVA_somatic" ionChannel="Ca_LVA" condDensity="0.09250008555398015 S_per_cm2" segmentGroup="soma_group" ion="ca"/>
                <channelDensityNernst id="Ca_HVA_axonal" ionChannel="Ca_HVA" condDensity="0.002961469262723619 S_per_cm2" segmentGroup="axon_group" ion="ca"/>
                <channelDensityNernst id="Ca_LVA_axonal" ionChannel="Ca_LVA" condDensity="5.9457835817342756e-05 S_per_cm2" segmentGroup="axon_group" ion="ca"/>
                <specificCapacitance value="2 uF_per_cm2"/>
                <initMembPotential value="-80mV"/>
            </membraneProperties>
            <intracellularProperties>
                <species id="ca" concentrationModel="CaDynamics_E2_NML2_PV_somatic" ion="ca" initialConcentration="1e-4 mM" initialExtConcentration="2.0E-6 mol_per_cm3" segmentGroup="soma_group"/>
                <species id="ca" concentrationModel="CaDynamics_E2_NML2_PV_axonal" ion="ca" initialConcentration="1e-4 mM" initialExtConcentration="2.0E-6 mol_per_cm3" segmentGroup="axon_group"/>
                <resistivity value="0.1 kohm_cm"/>
            </intracellularProperties>
        </biophysicalProperties>
    </cell>
</neuroml>