HL23PV_853.cell.nml 1.2 MB

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  3. <notes>Cell: HL23PV exported from NEURON ModelView. Reference: Yao, H. K.; Guet-McCreight, A.; Mazza, F.; Moradi Chameh, H.; Prevot, T. D.; Griffiths, J. D.; Tripathy, S. J.; Valiante, T. A.; Sibille, E. &amp; Hay, E. Reduced inhibition in depression impairs stimulus processing in human cortical microcircuits Cell Reports, Elsevier, 2022, 38</notes>
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  20341. <notes>This group contains an unbranched set of segments, and all of the segmentGroups marked with
  20342. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  20343. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  20493. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  20494. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  20521. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  20522. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  20602. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  20603. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  20692. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  20693. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  22183. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
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  22588. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  22702. <property xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:xs="http://www.w3.org/2001/XMLSchema" tag="numberInternalDivisions" value="9"/>
  22703. </annotation>
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  22853. </segmentGroup>
  22854. <segmentGroup id="soma_group" neuroLexId="GO:0043025">
  22855. <notes>Default soma segment group for the cell</notes>
  22856. <include segmentGroup="soma_0"/>
  22857. </segmentGroup>
  22858. <segmentGroup id="axon_group" neuroLexId="GO:0030424">
  22859. <notes>Default axon segment group for the cell</notes>
  22860. <include segmentGroup="axon_0"/>
  22861. <include segmentGroup="axon_1"/>
  22862. </segmentGroup>
  22863. <segmentGroup id="dendrite_group" neuroLexId="GO:0030425">
  22864. <notes>Default dendrite segment group for the cell</notes>
  22865. <include segmentGroup="dend_0"/>
  22866. <include segmentGroup="dend_1"/>
  22867. <include segmentGroup="dend_2"/>
  22868. <include segmentGroup="dend_3"/>
  22869. <include segmentGroup="dend_4"/>
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  22871. <include segmentGroup="dend_6"/>
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  22876. <include segmentGroup="dend_11"/>
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  22879. <include segmentGroup="dend_14"/>
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  22881. <include segmentGroup="dend_16"/>
  22882. <include segmentGroup="dend_17"/>
  22883. <include segmentGroup="dend_18"/>
  22884. <include segmentGroup="dend_19"/>
  22885. <include segmentGroup="dend_20"/>
  22886. <include segmentGroup="dend_21"/>
  22887. <include segmentGroup="dend_22"/>
  22888. <include segmentGroup="dend_23"/>
  22889. <include segmentGroup="dend_24"/>
  22890. <include segmentGroup="dend_25"/>
  22891. <include segmentGroup="dend_26"/>
  22892. <include segmentGroup="dend_27"/>
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  22894. <include segmentGroup="dend_29"/>
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  22896. <include segmentGroup="dend_31"/>
  22897. <include segmentGroup="dend_32"/>
  22898. <include segmentGroup="dend_33"/>
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  22900. <include segmentGroup="dend_35"/>
  22901. <include segmentGroup="dend_36"/>
  22902. <include segmentGroup="dend_37"/>
  22903. <include segmentGroup="dend_38"/>
  22904. <include segmentGroup="dend_39"/>
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  22906. <include segmentGroup="dend_41"/>
  22907. <include segmentGroup="dend_42"/>
  22908. <include segmentGroup="dend_43"/>
  22909. <include segmentGroup="dend_44"/>
  22910. <include segmentGroup="dend_45"/>
  22911. <include segmentGroup="dend_46"/>
  22912. <include segmentGroup="dend_47"/>
  22913. <include segmentGroup="dend_48"/>
  22914. </segmentGroup>
  22915. <segmentGroup id="all">
  22916. <include segmentGroup="axon_0"/>
  22917. <include segmentGroup="axon_1"/>
  22918. <include segmentGroup="dend_0"/>
  22919. <include segmentGroup="dend_1"/>
  22920. <include segmentGroup="dend_2"/>
  22921. <include segmentGroup="dend_3"/>
  22922. <include segmentGroup="dend_4"/>
  22923. <include segmentGroup="dend_5"/>
  22924. <include segmentGroup="dend_6"/>
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  22928. <include segmentGroup="dend_10"/>
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  22931. <include segmentGroup="dend_13"/>
  22932. <include segmentGroup="dend_14"/>
  22933. <include segmentGroup="dend_15"/>
  22934. <include segmentGroup="dend_16"/>
  22935. <include segmentGroup="dend_17"/>
  22936. <include segmentGroup="dend_18"/>
  22937. <include segmentGroup="dend_19"/>
  22938. <include segmentGroup="dend_20"/>
  22939. <include segmentGroup="dend_21"/>
  22940. <include segmentGroup="dend_22"/>
  22941. <include segmentGroup="dend_23"/>
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  22943. <include segmentGroup="dend_25"/>
  22944. <include segmentGroup="dend_26"/>
  22945. <include segmentGroup="dend_27"/>
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  22948. <include segmentGroup="dend_30"/>
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  22950. <include segmentGroup="dend_32"/>
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  22954. <include segmentGroup="dend_36"/>
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  22966. <include segmentGroup="dend_48"/>
  22967. <include segmentGroup="soma_0"/>
  22968. </segmentGroup>
  22969. </morphology>
  22970. <biophysicalProperties id="biophys">
  22971. <membraneProperties>
  22972. <channelDensity id="pas" ionChannel="pas" condDensity="0.00011830111773572024 S_per_cm2" erev="-83.92924122901199 mV" ion="non_specific"/>
  22973. <channelDensity id="Ih" ionChannel="Ih" condDensity="2.7671764064314368e-05 S_per_cm2" erev="-45 mV" ion="hcn"/>
  22974. <channelDensity id="NaTg_somatic" ionChannel="NaTg_PV" condDensity="0.49958525078702043 S_per_cm2" erev="50 mV" segmentGroup="soma_group" ion="na"/>
  22975. <channelDensity id="Nap_somatic" ionChannel="Nap" condDensity="0.008795461417521086 S_per_cm2" erev="50 mV" segmentGroup="soma_group" ion="na"/>
  22976. <channelDensity id="K_P_somatic" ionChannel="K_P" condDensity="9.606092478937705e-06 S_per_cm2" erev="-85 mV" segmentGroup="soma_group" ion="k"/>
  22977. <channelDensity id="K_T_somatic" ionChannel="K_T" condDensity="0.0011701702607527396 S_per_cm2" erev="-85 mV" segmentGroup="soma_group" ion="k"/>
  22978. <channelDensity id="Kv3_1_somatic" ionChannel="Kv3_1" condDensity="2.9921080101237565 S_per_cm2" erev="-85 mV" segmentGroup="soma_group" ion="k"/>
  22979. <channelDensity id="Im_somatic" ionChannel="Im" condDensity="0.04215865946497755 S_per_cm2" erev="-85 mV" segmentGroup="soma_group" ion="k"/>
  22980. <channelDensity id="SK_somatic" ionChannel="SK" condDensity="3.7265770903193036e-06 S_per_cm2" erev="-85 mV" segmentGroup="soma_group" ion="k"/>
  22981. <channelDensity id="NaTg_axonal" ionChannel="NaTg_PV" condDensity="0.10914576408883477 S_per_cm2" erev="50 mV" segmentGroup="axon_group" ion="na"/>
  22982. <channelDensity id="Nap_axonal" ionChannel="Nap" condDensity="0.001200899579358837 S_per_cm2" erev="50 mV" segmentGroup="axon_group" ion="na"/>
  22983. <channelDensity id="K_P_axonal" ionChannel="K_P" condDensity="0.6854776593761795 S_per_cm2" erev="-85 mV" segmentGroup="axon_group" ion="k"/>
  22984. <channelDensity id="K_T_axonal" ionChannel="K_T" condDensity="0.07603372775662909 S_per_cm2" erev="-85 mV" segmentGroup="axon_group" ion="k"/>
  22985. <channelDensity id="Kv3_1_axonal" ionChannel="Kv3_1" condDensity="2.988867483754507 S_per_cm2" erev="-85 mV" segmentGroup="axon_group" ion="k"/>
  22986. <channelDensity id="Im_axonal" ionChannel="Im" condDensity="0.029587905136596156 S_per_cm2" erev="-85 mV" segmentGroup="axon_group" ion="k"/>
  22987. <channelDensity id="SK_axonal" ionChannel="SK" condDensity="0.5121938998281017 S_per_cm2" erev="-85 mV" segmentGroup="axon_group" ion="k"/>
  22988. <channelDensityNernst id="Ca_HVA_somatic" ionChannel="Ca_HVA" condDensity="0.00017953651378188165 S_per_cm2" segmentGroup="soma_group" ion="ca"/>
  22989. <channelDensityNernst id="Ca_LVA_somatic" ionChannel="Ca_LVA" condDensity="0.09250008555398015 S_per_cm2" segmentGroup="soma_group" ion="ca"/>
  22990. <channelDensityNernst id="Ca_HVA_axonal" ionChannel="Ca_HVA" condDensity="0.002961469262723619 S_per_cm2" segmentGroup="axon_group" ion="ca"/>
  22991. <channelDensityNernst id="Ca_LVA_axonal" ionChannel="Ca_LVA" condDensity="5.9457835817342756e-05 S_per_cm2" segmentGroup="axon_group" ion="ca"/>
  22992. <specificCapacitance value="2 uF_per_cm2"/>
  22993. <initMembPotential value="-80mV"/>
  22994. </membraneProperties>
  22995. <intracellularProperties>
  22996. <species id="ca" concentrationModel="CaDynamics_E2_NML2_PV_somatic" ion="ca" initialConcentration="1e-4 mM" initialExtConcentration="2.0E-6 mol_per_cm3" segmentGroup="soma_group"/>
  22997. <species id="ca" concentrationModel="CaDynamics_E2_NML2_PV_axonal" ion="ca" initialConcentration="1e-4 mM" initialExtConcentration="2.0E-6 mol_per_cm3" segmentGroup="axon_group"/>
  22998. <resistivity value="0.1 kohm_cm"/>
  22999. </intracellularProperties>
  23000. </biophysicalProperties>
  23001. </cell>
  23002. </neuroml>