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Human-L2-3-Cortical-Microcircuit
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NeuroML2
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lems_components_0.5.xml

lems_components_0.5.xml 5.7 KB
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  1. <?xml version="1.0" ?>
    2. 

  2. <Lems xmlns="http://www.neuroml.org/lems/0.7.6" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/lems/0.7.6 https://raw.githubusercontent.com/LEMS/LEMS/development/Schemas/LEMS/LEMS_v0.7.6.xsd">
    3. 

  3.   <Include file="CaDynamics_E2_NML2.nml"/>
    4. 

  4.   <Include file="synapses/ProbAMPANMDA.synapse.nml"/>
    5. 

  5.   <Include file="synapses/ProbUDF.synapse.nml"/>
    6. 

  6.   <Include file="channels/Tonic.nml"/>
    7. 

  7.   <Include file="channels/Ca_HVA.channel.nml"/>
    8. 

  8.   <Include file="channels/Ca_LVA.channel.nml"/>
    9. 

  9.   <Include file="channels/Ih.channel.nml"/>
    10. 

  10.   <Include file="channels/Im.channel.nml"/>
    11. 

  11.   <Include file="channels/K_P.channel.nml"/>
    12. 

  12.   <Include file="channels/K_T.channel.nml"/>
    13. 

  13.   <Include file="channels/Kv3_1.channel.nml"/>
    14. 

  14.   <Include file="channels/Nap.channel.nml"/>
    15. 

  15.   <Include file="channels/SK.channel.nml"/>
    16. 

  16.   <Include file="channels/pas.channel.nml"/>
    17. 

  17.   <Include file="channels/NaTg/NaTg.channel.nml"/>
    18. 

  18.   <Include file="synapses/Gfluct.nml"/>
    19. 

  19.   <Component id="HL23PYR_HL23PYR_ProbAMPANMDA" type="ProbAMPANMDA" tau_r_AMPA="0.3 ms" tau_d_AMPA="3 ms" tau_r_NMDA="2 ms" tau_d_NMDA="65 ms" Use="0.46" Dep="670 ms" Fac="17 ms" gbase="0.0002482 uS" u0="0" erev="0 mV" mg="1 mM" weight_factor_NMDA="1"/>
    20. 

  20.   <Component id="HL23PYR_HL23SST_ProbAMPANMDA" type="ProbAMPANMDA" tau_r_AMPA="0.3 ms" tau_d_AMPA="3 ms" tau_r_NMDA="2 ms" tau_d_NMDA="65 ms" Use="0.09" Dep="140 ms" Fac="670 ms" gbase="0.00038 uS" u0="0" erev="0 mV" mg="1 mM" weight_factor_NMDA="1"/>
    21. 

  21.   <Component id="HL23PYR_HL23PV_ProbAMPANMDA" type="ProbAMPANMDA" tau_r_AMPA="0.3 ms" tau_d_AMPA="3 ms" tau_r_NMDA="2 ms" tau_d_NMDA="65 ms" Use="0.88" Dep="510 ms" Fac="180 ms" gbase="0.000337 uS" u0="0" erev="0 mV" mg="1 mM" weight_factor_NMDA="1"/>
    22. 

  22.   <Component id="HL23PYR_HL23VIP_ProbAMPANMDA" type="ProbAMPANMDA" tau_r_AMPA="0.3 ms" tau_d_AMPA="3 ms" tau_r_NMDA="2 ms" tau_d_NMDA="65 ms" Use="0.5" Dep="670 ms" Fac="17 ms" gbase="0.00031 uS" u0="0" erev="0 mV" mg="1 mM" weight_factor_NMDA="1"/>
    23. 

  23.   <Component id="HL23SST_HL23PYR_ProbUDFsyn" type="ProbUDFsyn" tau_r="1 ms" tau_d="10 ms" Use="0.3" Dep="1300 ms" Fac="2 ms" gbase="0.00124 uS" u0="0" erev="-80 mV"/>
    24. 

  24.   <Component id="HL23SST_HL23SST_ProbUDFsyn" type="ProbUDFsyn" tau_r="1 ms" tau_d="10 ms" Use="0.25" Dep="720 ms" Fac="21 ms" gbase="0.00034 uS" u0="0" erev="-80 mV"/>
    25. 

  25.   <Component id="HL23SST_HL23PV_ProbUDFsyn" type="ProbUDFsyn" tau_r="1 ms" tau_d="10 ms" Use="0.25" Dep="710 ms" Fac="21 ms" gbase="0.00033 uS" u0="0" erev="-80 mV"/>
    26. 

  26.   <Component id="HL23SST_HL23VIP_ProbUDFsyn" type="ProbUDFsyn" tau_r="1 ms" tau_d="10 ms" Use="0.31" Dep="890 ms" Fac="25 ms" gbase="0.00046 uS" u0="0" erev="-80 mV"/>
    27. 

  27.   <Component id="HL23PV_HL23PYR_ProbUDFsyn" type="ProbUDFsyn" tau_r="1 ms" tau_d="10 ms" Use="0.08" Dep="710 ms" Fac="23 ms" gbase="0.00291 uS" u0="0" erev="-80 mV"/>
    28. 

  28.   <Component id="HL23PV_HL23SST_ProbUDFsyn" type="ProbUDFsyn" tau_r="1 ms" tau_d="10 ms" Use="0.25" Dep="700 ms" Fac="21 ms" gbase="0.00033 uS" u0="0" erev="-80 mV"/>
    29. 

  29.   <Component id="HL23PV_HL23PV_ProbUDFsyn" type="ProbUDFsyn" tau_r="1 ms" tau_d="10 ms" Use="0.25" Dep="710 ms" Fac="21 ms" gbase="0.00033 uS" u0="0" erev="-80 mV"/>
    30. 

  30.   <Component id="HL23PV_HL23VIP_ProbUDFsyn" type="ProbUDFsyn" tau_r="1 ms" tau_d="10 ms" Use="0.26" Dep="720 ms" Fac="21 ms" gbase="0.00034 uS" u0="0" erev="-80 mV"/>
    31. 

  31.   <Component id="HL23VIP_HL23PYR_ProbUDFsyn" type="ProbUDFsyn" tau_r="1 ms" tau_d="10 ms" Use="0.23" Dep="300 ms" Fac="160 ms" gbase="0.0 uS" u0="0" erev="-80 mV"/>
    32. 

  32.   <Component id="HL23VIP_HL23SST_ProbUDFsyn" type="ProbUDFsyn" tau_r="1 ms" tau_d="10 ms" Use="0.27" Dep="760 ms" Fac="22 ms" gbase="0.00036 uS" u0="0" erev="-80 mV"/>
    33. 

  33.   <Component id="HL23VIP_HL23PV_ProbUDFsyn" type="ProbUDFsyn" tau_r="1 ms" tau_d="10 ms" Use="0.25" Dep="720 ms" Fac="21 ms" gbase="0.00034 uS" u0="0" erev="-80 mV"/>
    34. 

  34.   <Component id="HL23VIP_HL23VIP_ProbUDFsyn" type="ProbUDFsyn" tau_r="1 ms" tau_d="10 ms" Use="0.26" Dep="720 ms" Fac="21 ms" gbase="0.00034 uS" u0="0" erev="-80 mV"/>
    35. 

  35.   <Component id="Gfluct_HL23PYR_0_5" type="Gfluct" start="0ms" stop="1000ms" dt="0.025ms" E_e="0mV" E_i="-80mV" g_e0="0.00010881560386620847 uS" g_i0="0pS" tau_e="65ms" tau_i="20ms" std_e="0.00010881560386620847 uS" std_i="0pS"/>
    36. 

  36.   <Component id="Gfluct_HL23SST_0_5" type="Gfluct" start="0ms" stop="1000ms" dt="0.025ms" E_e="0mV" E_i="-80mV" g_e0="4.9461638121003845e-05 uS" g_i0="0pS" tau_e="65ms" tau_i="20ms" std_e="4.9461638121003845e-05 uS" std_i="0pS"/>
    37. 

  37.   <Component id="Gfluct_HL23PV_0_5" type="Gfluct" start="0ms" stop="1000ms" dt="0.025ms" E_e="0mV" E_i="-80mV" g_e0="0.00046164195579603584 uS" g_i0="0pS" tau_e="65ms" tau_i="20ms" std_e="0.00046164195579603584 uS" std_i="0pS"/>
    38. 

  38.   <Component id="Gfluct_HL23VIP_0_5" type="Gfluct" start="0ms" stop="1000ms" dt="0.025ms" E_e="0mV" E_i="-80mV" g_e0="0.00010881560386620847 uS" g_i0="0pS" tau_e="65ms" tau_i="20ms" std_e="0.00010881560386620847 uS" std_i="0pS"/>
    39. 

  39.   <Component id="Gfluct_HL23PYR_0_1" type="Gfluct" start="0ms" stop="1000ms" dt="0.025ms" E_e="0mV" E_i="-80mV" g_e0="7.294128059299276e-05 uS" g_i0="0pS" tau_e="65ms" tau_i="20ms" std_e="7.294128059299276e-05 uS" std_i="0pS"/>
    40. 

  40.   <Component id="Gfluct_HL23PYR_0_3" type="Gfluct" start="0ms" stop="1000ms" dt="0.025ms" E_e="0mV" E_i="-80mV" g_e0="8.909068130001622e-05 uS" g_i0="0pS" tau_e="65ms" tau_i="20ms" std_e="8.909068130001622e-05 uS" std_i="0pS"/>
    41. 

  41.   <Component id="Gfluct_HL23PYR_0_7" type="Gfluct" start="0ms" stop="1000ms" dt="0.025ms" E_e="0mV" E_i="-80mV" g_e0="0.00013290767869305147 uS" g_i0="0pS" tau_e="65ms" tau_i="20ms" std_e="0.00013290767869305147 uS" std_i="0pS"/>
    42. 

  42.   <Component id="Gfluct_HL23PYR_0_9" type="Gfluct" start="0ms" stop="1000ms" dt="0.025ms" E_e="0mV" E_i="-80mV" g_e0="0.0001623338053363587 uS" g_i0="0pS" tau_e="65ms" tau_i="20ms" std_e="0.0001623338053363587 uS" std_i="0pS"/>
    43. 

  43. </Lems>
    44.