Human-L2-3-Cortical-Microcircuit/NeuroML2/NeuroML-info-PYR.yaml

ca_ion:
    avg_rev_pot: 132.4579341637009
    ext_conc: 2.0
    int_conc: 5.0e-05
    nsecs: 3
k_ion:
    avg_rev_pot: -85.0
    ext_conc: 2.5
    int_conc: 54.4
    nsecs: 3
mechanisms:
    CaDynamics_E2_PYR_axonal:
        num_params: 5
        parameters:
            Faraday_CaDynamics_E2_PYR_axonal:
                ave_all_segs: 96485300000.0
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': 96485300000.0
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': 96485300000.0
            decay_CaDynamics_E2_PYR_axonal:
                ave_all_segs: 226.0
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': 226.0
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': 226.0
            depth_CaDynamics_E2_PYR_axonal:
                ave_all_segs: 1.0e-05
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': 1.0e-05
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': 1.0e-05
            gamma_CaDynamics_E2_PYR_axonal:
                ave_all_segs: 0.0005000000000000001
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': 0.0005
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': 0.0005
            minCai_CaDynamics_E2_PYR_axonal:
                ave_all_segs: 0.00010000000000000003
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': 0.0001
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': 0.0001
        present_on_secs: 2
    CaDynamics_E2_PYR_somatic:
        num_params: 5
        parameters:
            Faraday_CaDynamics_E2_PYR_somatic:
                ave_all_segs: 96485300000.0
                values:
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': 96485300000.0
            decay_CaDynamics_E2_PYR_somatic:
                ave_all_segs: 20.0
                values:
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': 20.0
            depth_CaDynamics_E2_PYR_somatic:
                ave_all_segs: 1.0e-05
                values:
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': 1.0e-05
            gamma_CaDynamics_E2_PYR_somatic:
                ave_all_segs: 0.0005
                values:
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': 0.0005
            minCai_CaDynamics_E2_PYR_somatic:
                ave_all_segs: 0.0001
                values:
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': 0.0001
        present_on_secs: 1
    Ca_HVA:
        num_params: 16
        parameters:
            conductance_Ca_HVA:
                ave_all_segs: 1.0e-05
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': 1.0e-05
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': 1.0e-05
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': 1.0e-05
            gmax_Ca_HVA:
                ave_all_segs: 0.00040169227230769233
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': 0.00030599997
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': 0.00030599997
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': 0.0015499999
            h_forwardRate_midpoint_Ca_HVA:
                ave_all_segs: -13.0
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': -13.0
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': -13.0
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': -13.0
            h_forwardRate_rate_Ca_HVA:
                ave_all_segs: 0.000457
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': 0.000457
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': 0.000457
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': 0.000457
            h_forwardRate_scale_Ca_HVA:
                ave_all_segs: -50.0
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': -50.0
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': -50.0
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': -50.0
            h_instances_Ca_HVA:
                ave_all_segs: 1.0
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': 1.0
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': 1.0
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': 1.0
            h_reverseRate_midpoint_Ca_HVA:
                ave_all_segs: -15.0
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': -15.0
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': -15.0
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': -15.0
            h_reverseRate_rate_Ca_HVA:
                ave_all_segs: 0.0065000000000000014
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': 0.0065
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': 0.0065
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': 0.0065
            h_reverseRate_scale_Ca_HVA:
                ave_all_segs: 28.0
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': 28.0
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': 28.0
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': 28.0
            m_forwardRate_midpoint_Ca_HVA:
                ave_all_segs: -27.0
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': -27.0
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': -27.0
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': -27.0
            m_forwardRate_rate_Ca_HVA:
                ave_all_segs: 0.20900000000000005
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': 0.209
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': 0.209
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': 0.209
            m_forwardRate_scale_Ca_HVA:
                ave_all_segs: 3.7999999999999994
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': 3.8
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': 3.8
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': 3.8
            m_instances_Ca_HVA:
                ave_all_segs: 2.0
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': 2.0
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': 2.0
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': 2.0
            m_reverseRate_midpoint_Ca_HVA:
                ave_all_segs: -75.0
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': -75.0
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': -75.0
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': -75.0
            m_reverseRate_rate_Ca_HVA:
                ave_all_segs: 0.9399999999999996
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': 0.94
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': 0.94
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': 0.94
            m_reverseRate_scale_Ca_HVA:
                ave_all_segs: -17.0
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': -17.0
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': -17.0
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': -17.0
        present_on_secs: 3
    Ca_LVA:
        num_params: 16
        parameters:
            conductance_Ca_LVA:
                ave_all_segs: 1.0e-05
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': 1.0e-05
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': 1.0e-05
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': 1.0e-05
            gmax_Ca_LVA:
                ave_all_segs: 0.04075076738461539
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': 0.043899998
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': 0.043899998
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': 0.00296
            h_instances_Ca_LVA:
                ave_all_segs: 1.0
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': 1.0
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': 1.0
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': 1.0
            h_q10Settings_fixedQ10_Ca_LVA:
                ave_all_segs: 2.95288
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': 2.95288
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': 2.95288
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': 2.95288
            h_steadyState_midpoint_Ca_LVA:
                ave_all_segs: -90.0
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': -90.0
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': -90.0
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': -90.0
            h_steadyState_rate_Ca_LVA:
                ave_all_segs: 1.0
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': 1.0
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': 1.0
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': 1.0
            h_steadyState_scale_Ca_LVA:
                ave_all_segs: -6.4
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': -6.4
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': -6.4
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': -6.4
            h_timeCourse_TIME_SCALE_Ca_LVA:
                ave_all_segs: 1.0
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': 1.0
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': 1.0
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': 1.0
            h_timeCourse_VOLT_SCALE_Ca_LVA:
                ave_all_segs: 1.0
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': 1.0
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': 1.0
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': 1.0
            m_instances_Ca_LVA:
                ave_all_segs: 2.0
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': 2.0
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': 2.0
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': 2.0
            m_q10Settings_fixedQ10_Ca_LVA:
                ave_all_segs: 2.95288
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': 2.95288
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': 2.95288
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': 2.95288
            m_steadyState_midpoint_Ca_LVA:
                ave_all_segs: -40.0
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': -40.0
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': -40.0
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': -40.0
            m_steadyState_rate_Ca_LVA:
                ave_all_segs: 1.0
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': 1.0
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': 1.0
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': 1.0
            m_steadyState_scale_Ca_LVA:
                ave_all_segs: 6.0
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': 6.0
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': 6.0
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': 6.0
            m_timeCourse_TIME_SCALE_Ca_LVA:
                ave_all_segs: 1.0
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': 1.0
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': 1.0
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': 1.0
            m_timeCourse_VOLT_SCALE_Ca_LVA:
                ave_all_segs: 1.0
                values:
                    HL23PYR_0_.axon_0:
                        id: HL23PYR[0].axon_0
                        nseg: 5
                        values:
                            '*': 1.0
                    HL23PYR_0_.axon_1:
                        id: HL23PYR[0].axon_1
                        nseg: 7
                        values:
                            '*': 1.0
                    HL23PYR_0_.soma_0:
                        id: HL23PYR[0].soma_0
                        nseg: 1
                        values:
                            '*': 1.0
        present_on_secs: 3
    Ih:
        num_params: 9
        parameters:
            conductance_Ih:
                ave_all_segs: 1.0000000000000025e-05
                values:
                    HL23PYR_0_.apic_0:
                        id: HL23PYR[0].apic_0
                        nseg: 1
                        values:
                            '*': 1.0e-05
                    HL23PYR_0_.apic_1:
                        id: HL23PYR[0].apic_1
                        nseg: 1
                        values:
                            '*': 1.0e-05
                    HL23PYR_0_.apic_10:
                        id: HL23PYR[0].apic_10
                        nseg: 1
                        values:
                            '*': 1.0e-05
                    HL23PYR_0_.apic_11:
                        id: HL23PYR[0].apic_11
                        nseg: 1
                        values:
                            '*': 1.0e-05
                    HL23PYR_0_.apic_12:
                        id: HL23PYR[0].apic_12
                        nseg: 1
                        values:
                            '*': 1.0e-05
                    HL23PYR_0_.apic_13:
                        id: HL23PYR[0].apic_13
                        nseg: 5
                        values:
                            '*': 1.0e-05
                    HL23PYR_0_.apic_14:
                        id: HL23PYR[0].apic_14
                        nseg: 1
                        values:
                            '*': 1.0e-05
                    HL23PYR_0_.apic_15:
                        id: HL23PYR[0].apic_15
                        nseg: 1
                        values:
                            '*': 1.0e-05
                    HL23PYR_0_.apic_16:
                        id: HL23PYR[0].apic_16
                        nseg: 1
                        values:
                            '*': 1.0e-05
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        parameters:
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                values:
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            m_forwardRate_vHalf_NaTg_PYR_axonal:
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                values:
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            m_instances_NaTg_PYR_axonal:
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            m_q10Settings_fixedQ10_NaTg_PYR_axonal:
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                values:
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            h_q10Settings_fixedQ10_Nap:
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                values:
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        present_on_secs: 91
na_ion:
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    ext_conc: 140.0
    int_conc: 10.0
    nsecs: 3
num_sections: 92
temperature: 34.0
total_Cm: 179.02
total_L: 7835.574287505734
total_Ra: 9200.0
total_diam: 95.32181254125037
total_nseg: 382