HL23PV.pas.cell.nml 1.1 MB

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  2. <notes> NeuroML 2 file generated from ModelView by: NEURON -- VERSION 8.2.2 release/8.2 (93d41fafd) 2022-12-15
  3. Authors: Michael Hines, Sushil Kambampati and Padraig Gleeson,
  4. Yale University and UCL
  5. </notes>
  6. <include href="CaDynamics_E2_NML2.nml"/>
  7. <include href="channels/pas.channel.nml"/>
  8. <cell id="HL23PV">
  9. <notes>Cell: HL23PV exported from NEURON ModelView. Reference: Yao, H. K.; Guet-McCreight, A.; Mazza, F.; Moradi Chameh, H.; Prevot, T. D.; Griffiths, J. D.; Tripathy, S. J.; Valiante, T. A.; Sibille, E. &amp; Hay, E. Reduced inhibition in depression impairs stimulus processing in human cortical microcircuits Cell Reports, Elsevier, 2022, 38</notes>
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  18120. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
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  18138. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
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  18160. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  18161. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  19903. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  19904. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  20060. <notes>This group contains an unbranched set of segments, and all of the segmentGroups marked with
  20061. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  20062. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  20064. <annotation>
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  20347. <notes>This group contains an unbranched set of segments, and all of the segmentGroups marked with
  20348. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  20349. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  20351. <annotation>
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  20499. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  20500. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  20527. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  20528. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  20608. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
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  20698. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  20699. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  20827. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  20828. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  22189. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  22190. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  22329. <notes>This group contains an unbranched set of segments, and all of the segmentGroups marked with
  22330. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  22331. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  22334. <property xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" tag="numberInternalDivisions" value="5"/>
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  22429. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  22430. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  22433. <property xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" tag="numberInternalDivisions" value="9"/>
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  22592. <notes>This group contains an unbranched set of segments, and all of the segmentGroups marked with
  22593. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  22594. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  22597. <property xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" tag="numberInternalDivisions" value="3"/>
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  22651. <segmentGroup id="dend_38" neuroLexId="sao864921383">
  22652. <notes>This group contains an unbranched set of segments, and all of the segmentGroups marked with
  22653. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  22654. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  22703. <notes>This group contains an unbranched set of segments, and all of the segmentGroups marked with
  22704. neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
  22705. These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
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  22860. <segmentGroup id="soma_group" neuroLexId="GO:0043025">
  22861. <notes>Default soma segment group for the cell</notes>
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  22864. <segmentGroup id="axon_group" neuroLexId="GO:0030424">
  22865. <notes>Default axon segment group for the cell</notes>
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  22867. <include segmentGroup="axon_1"/>
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  22869. <segmentGroup id="dendrite_group" neuroLexId="GO:0030425">
  22870. <notes>Default dendrite segment group for the cell</notes>
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  22872. <include segmentGroup="dend_1"/>
  22873. <include segmentGroup="dend_2"/>
  22874. <include segmentGroup="dend_3"/>
  22875. <include segmentGroup="dend_4"/>
  22876. <include segmentGroup="dend_5"/>
  22877. <include segmentGroup="dend_6"/>
  22878. <include segmentGroup="dend_7"/>
  22879. <include segmentGroup="dend_8"/>
  22880. <include segmentGroup="dend_9"/>
  22881. <include segmentGroup="dend_10"/>
  22882. <include segmentGroup="dend_11"/>
  22883. <include segmentGroup="dend_12"/>
  22884. <include segmentGroup="dend_13"/>
  22885. <include segmentGroup="dend_14"/>
  22886. <include segmentGroup="dend_15"/>
  22887. <include segmentGroup="dend_16"/>
  22888. <include segmentGroup="dend_17"/>
  22889. <include segmentGroup="dend_18"/>
  22890. <include segmentGroup="dend_19"/>
  22891. <include segmentGroup="dend_20"/>
  22892. <include segmentGroup="dend_21"/>
  22893. <include segmentGroup="dend_22"/>
  22894. <include segmentGroup="dend_23"/>
  22895. <include segmentGroup="dend_24"/>
  22896. <include segmentGroup="dend_25"/>
  22897. <include segmentGroup="dend_26"/>
  22898. <include segmentGroup="dend_27"/>
  22899. <include segmentGroup="dend_28"/>
  22900. <include segmentGroup="dend_29"/>
  22901. <include segmentGroup="dend_30"/>
  22902. <include segmentGroup="dend_31"/>
  22903. <include segmentGroup="dend_32"/>
  22904. <include segmentGroup="dend_33"/>
  22905. <include segmentGroup="dend_34"/>
  22906. <include segmentGroup="dend_35"/>
  22907. <include segmentGroup="dend_36"/>
  22908. <include segmentGroup="dend_37"/>
  22909. <include segmentGroup="dend_38"/>
  22910. <include segmentGroup="dend_39"/>
  22911. <include segmentGroup="dend_40"/>
  22912. <include segmentGroup="dend_41"/>
  22913. <include segmentGroup="dend_42"/>
  22914. <include segmentGroup="dend_43"/>
  22915. <include segmentGroup="dend_44"/>
  22916. <include segmentGroup="dend_45"/>
  22917. <include segmentGroup="dend_46"/>
  22918. <include segmentGroup="dend_47"/>
  22919. <include segmentGroup="dend_48"/>
  22920. </segmentGroup>
  22921. <segmentGroup id="all">
  22922. <include segmentGroup="axon_0"/>
  22923. <include segmentGroup="axon_1"/>
  22924. <include segmentGroup="dend_0"/>
  22925. <include segmentGroup="dend_1"/>
  22926. <include segmentGroup="dend_2"/>
  22927. <include segmentGroup="dend_3"/>
  22928. <include segmentGroup="dend_4"/>
  22929. <include segmentGroup="dend_5"/>
  22930. <include segmentGroup="dend_6"/>
  22931. <include segmentGroup="dend_7"/>
  22932. <include segmentGroup="dend_8"/>
  22933. <include segmentGroup="dend_9"/>
  22934. <include segmentGroup="dend_10"/>
  22935. <include segmentGroup="dend_11"/>
  22936. <include segmentGroup="dend_12"/>
  22937. <include segmentGroup="dend_13"/>
  22938. <include segmentGroup="dend_14"/>
  22939. <include segmentGroup="dend_15"/>
  22940. <include segmentGroup="dend_16"/>
  22941. <include segmentGroup="dend_17"/>
  22942. <include segmentGroup="dend_18"/>
  22943. <include segmentGroup="dend_19"/>
  22944. <include segmentGroup="dend_20"/>
  22945. <include segmentGroup="dend_21"/>
  22946. <include segmentGroup="dend_22"/>
  22947. <include segmentGroup="dend_23"/>
  22948. <include segmentGroup="dend_24"/>
  22949. <include segmentGroup="dend_25"/>
  22950. <include segmentGroup="dend_26"/>
  22951. <include segmentGroup="dend_27"/>
  22952. <include segmentGroup="dend_28"/>
  22953. <include segmentGroup="dend_29"/>
  22954. <include segmentGroup="dend_30"/>
  22955. <include segmentGroup="dend_31"/>
  22956. <include segmentGroup="dend_32"/>
  22957. <include segmentGroup="dend_33"/>
  22958. <include segmentGroup="dend_34"/>
  22959. <include segmentGroup="dend_35"/>
  22960. <include segmentGroup="dend_36"/>
  22961. <include segmentGroup="dend_37"/>
  22962. <include segmentGroup="dend_38"/>
  22963. <include segmentGroup="dend_39"/>
  22964. <include segmentGroup="dend_40"/>
  22965. <include segmentGroup="dend_41"/>
  22966. <include segmentGroup="dend_42"/>
  22967. <include segmentGroup="dend_43"/>
  22968. <include segmentGroup="dend_44"/>
  22969. <include segmentGroup="dend_45"/>
  22970. <include segmentGroup="dend_46"/>
  22971. <include segmentGroup="dend_47"/>
  22972. <include segmentGroup="dend_48"/>
  22973. <include segmentGroup="soma_0"/>
  22974. </segmentGroup>
  22975. </morphology>
  22976. <biophysicalProperties id="biophys">
  22977. <membraneProperties>
  22978. <channelDensity id="pas" ionChannel="pas" condDensity="0.00011830111773572024 S_per_cm2" erev="-83.92924122901199 mV" ion="non_specific"/>
  22979. <spikeThresh value="10mV"/>
  22980. <specificCapacitance value="2 uF_per_cm2"/>
  22981. <initMembPotential value="-80mV"/>
  22982. </membraneProperties>
  22983. <intracellularProperties>
  22984. <resistivity value="0.1 kohm_cm"/>
  22985. </intracellularProperties>
  22986. </biophysicalProperties>
  22987. </cell>
  22988. </neuroml>