Human-L2-3-Cortical-Microcircuit/NeuroML2/rotated_cells/HL23SST_849.cell.nml

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        <notes>Cell: HL23SST exported from NEURON ModelView. Reference: Yao, H. K.; Guet-McCreight, A.; Mazza, F.; Moradi Chameh, H.; Prevot, T. D.; Griffiths, J. D.; Tripathy, S. J.; Valiante, T. A.; Sibille, E. &amp; Hay, E.  Reduced inhibition in depression impairs stimulus processing in human cortical microcircuits Cell Reports, Elsevier, 2022, 38</notes>
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                <member segment="2843"/>
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                <member segment="2845"/>
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            <segmentGroup id="dend_46" neuroLexId="sao864921383">
                <notes>This group contains an unbranched set of segments, and all of the segmentGroups marked with
             neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
             These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
                <property tag="numberInternalDivisions" value="7"/>
                <annotation>
                    <property xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:xs="http://www.w3.org/2001/XMLSchema" tag="numberInternalDivisions" value="7"/> 
        
                
                </annotation>
                <member segment="2632"/>
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                <member segment="2641"/>
                <member segment="2642"/>
                <member segment="2643"/>
                <member segment="2644"/>
                <member segment="2645"/>
                <member segment="2646"/>
                <member segment="2647"/>
                <member segment="2648"/>
                <member segment="2649"/>
                <member segment="2650"/>
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                <member segment="2652"/>
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                <member segment="2677"/>
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                <member segment="2680"/>
                <member segment="2681"/>
                <member segment="2682"/>
                <member segment="2683"/>
                <member segment="2684"/>
                <member segment="2685"/>
                <member segment="2686"/>
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                <member segment="2690"/>
                <member segment="2691"/>
                <member segment="2692"/>
                <member segment="2693"/>
                <member segment="2694"/>
                <member segment="2695"/>
                <member segment="2696"/>
                <member segment="2697"/>
                <member segment="2698"/>
                <member segment="2699"/>
                <member segment="2700"/>
                <member segment="2701"/>
                <member segment="2702"/>
                <member segment="2703"/>
                <member segment="2704"/>
                <member segment="2705"/>
                <member segment="2706"/>
                <member segment="2707"/>
                <member segment="2708"/>
                <member segment="2709"/>
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                <member segment="2713"/>
                <member segment="2714"/>
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                <member segment="2717"/>
                <member segment="2718"/>
                <member segment="2719"/>
                <member segment="2720"/>
                <member segment="2721"/>
                <member segment="2722"/>
                <member segment="2723"/>
                <member segment="2724"/>
                <member segment="2725"/>
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            <segmentGroup id="dend_44" neuroLexId="sao864921383">
                <notes>This group contains an unbranched set of segments, and all of the segmentGroups marked with
             neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
             These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
                <member segment="2556"/>
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                <member segment="2559"/>
                <member segment="2560"/>
                <member segment="2561"/>
                <member segment="2562"/>
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                <member segment="2565"/>
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                <member segment="2573"/>
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                <member segment="2575"/>
                <member segment="2576"/>
                <member segment="2577"/>
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                <member segment="2579"/>
                <member segment="2580"/>
                <member segment="2581"/>
                <member segment="2582"/>
                <member segment="2583"/>
                <member segment="2584"/>
                <member segment="2585"/>
                <member segment="2586"/>
                <member segment="2587"/>
                <member segment="2588"/>
                <member segment="2589"/>
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            <segmentGroup id="dend_43" neuroLexId="sao864921383">
                <notes>This group contains an unbranched set of segments, and all of the segmentGroups marked with
             neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
             These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
                <property tag="numberInternalDivisions" value="3"/>
                <annotation>
                    <property xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:xs="http://www.w3.org/2001/XMLSchema" tag="numberInternalDivisions" value="3"/> 
        
                
                </annotation>
                <member segment="2507"/>
                <member segment="2508"/>
                <member segment="2509"/>
                <member segment="2510"/>
                <member segment="2511"/>
                <member segment="2512"/>
                <member segment="2513"/>
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                <member segment="2515"/>
                <member segment="2516"/>
                <member segment="2517"/>
                <member segment="2518"/>
                <member segment="2519"/>
                <member segment="2520"/>
                <member segment="2521"/>
                <member segment="2522"/>
                <member segment="2523"/>
                <member segment="2524"/>
                <member segment="2525"/>
                <member segment="2526"/>
                <member segment="2527"/>
                <member segment="2528"/>
                <member segment="2529"/>
                <member segment="2530"/>
                <member segment="2531"/>
                <member segment="2532"/>
                <member segment="2533"/>
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                <member segment="2553"/>
                <member segment="2554"/>
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            <segmentGroup id="dend_29" neuroLexId="sao864921383">
                <notes>This group contains an unbranched set of segments, and all of the segmentGroups marked with
             neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
             These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
                <member segment="1929"/>
                <member segment="1930"/>
                <member segment="1931"/>
                <member segment="1932"/>
                <member segment="1933"/>
                <member segment="1934"/>
                <member segment="1935"/>
            </segmentGroup>
            <segmentGroup id="dend_28" neuroLexId="sao864921383">
                <notes>This group contains an unbranched set of segments, and all of the segmentGroups marked with
             neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
             These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
                <member segment="1900"/>
                <member segment="1901"/>
                <member segment="1902"/>
                <member segment="1903"/>
                <member segment="1904"/>
                <member segment="1905"/>
                <member segment="1906"/>
                <member segment="1907"/>
                <member segment="1908"/>
                <member segment="1909"/>
                <member segment="1910"/>
                <member segment="1911"/>
                <member segment="1912"/>
                <member segment="1913"/>
                <member segment="1914"/>
                <member segment="1915"/>
                <member segment="1916"/>
                <member segment="1917"/>
                <member segment="1918"/>
                <member segment="1919"/>
                <member segment="1920"/>
                <member segment="1921"/>
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                <member segment="1923"/>
                <member segment="1924"/>
                <member segment="1925"/>
                <member segment="1926"/>
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            <segmentGroup id="dend_53" neuroLexId="sao864921383">
                <notes>This group contains an unbranched set of segments, and all of the segmentGroups marked with
             neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
             These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
                <member segment="3146"/>
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                <member segment="3148"/>
                <member segment="3149"/>
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                <member segment="3152"/>
                <member segment="3153"/>
                <member segment="3154"/>
                <member segment="3155"/>
                <member segment="3156"/>
                <member segment="3157"/>
                <member segment="3158"/>
                <member segment="3159"/>
                <member segment="3160"/>
                <member segment="3161"/>
                <member segment="3162"/>
                <member segment="3163"/>
                <member segment="3164"/>
            </segmentGroup>
            <segmentGroup id="dend_52" neuroLexId="sao864921383">
                <notes>This group contains an unbranched set of segments, and all of the segmentGroups marked with
             neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
             These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
                <property tag="numberInternalDivisions" value="5"/>
                <annotation>
                    <property xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:xs="http://www.w3.org/2001/XMLSchema" tag="numberInternalDivisions" value="5"/> 
        
                
                </annotation>
                <member segment="3044"/>
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                <member segment="3105"/>
                <member segment="3106"/>
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                <member segment="3144"/>
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            </segmentGroup>
            <segmentGroup id="basal_dendrite_group" neuroLexId="GO:0030425">
                <notes>Basal dendrites</notes>
                <include segmentGroup="dend_0"/>
                <include segmentGroup="dend_1"/>
                <include segmentGroup="dend_2"/>
                <include segmentGroup="dend_3"/>
                <include segmentGroup="dend_4"/>
                <include segmentGroup="dend_5"/>
                <include segmentGroup="dend_6"/>
                <include segmentGroup="dend_7"/>
                <include segmentGroup="dend_8"/>
                <include segmentGroup="dend_9"/>
                <include segmentGroup="dend_10"/>
                <include segmentGroup="dend_11"/>
                <include segmentGroup="dend_12"/>
                <include segmentGroup="dend_13"/>
                <include segmentGroup="dend_14"/>
                <include segmentGroup="dend_15"/>
                <include segmentGroup="dend_16"/>
                <include segmentGroup="dend_17"/>
                <include segmentGroup="dend_18"/>
                <include segmentGroup="dend_19"/>
                <include segmentGroup="dend_20"/>
                <include segmentGroup="dend_21"/>
                <include segmentGroup="dend_22"/>
                <include segmentGroup="dend_23"/>
                <include segmentGroup="dend_24"/>
                <include segmentGroup="dend_25"/>
                <include segmentGroup="dend_26"/>
                <include segmentGroup="dend_27"/>
                <include segmentGroup="dend_28"/>
                <include segmentGroup="dend_29"/>
                <include segmentGroup="dend_30"/>
                <include segmentGroup="dend_31"/>
                <include segmentGroup="dend_32"/>
                <include segmentGroup="dend_33"/>
                <include segmentGroup="dend_34"/>
                <include segmentGroup="dend_35"/>
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                <include segmentGroup="dend_37"/>
                <include segmentGroup="dend_38"/>
                <include segmentGroup="dend_39"/>
                <include segmentGroup="dend_40"/>
                <include segmentGroup="dend_41"/>
                <include segmentGroup="dend_42"/>
                <include segmentGroup="dend_43"/>
                <include segmentGroup="dend_44"/>
                <include segmentGroup="dend_45"/>
                <include segmentGroup="dend_46"/>
                <include segmentGroup="dend_47"/>
                <include segmentGroup="dend_48"/>
                <include segmentGroup="dend_49"/>
                <include segmentGroup="dend_50"/>
                <include segmentGroup="dend_51"/>
                <include segmentGroup="dend_52"/>
                <include segmentGroup="dend_53"/>
                <include segmentGroup="dend_54"/>
            </segmentGroup>
            <segmentGroup id="myelin_group">
                <notes>Myelin group</notes>
                <include segmentGroup="myelin_0"/>
            </segmentGroup>
            <segmentGroup id="all_minus_myelin">
                <notes>All without myelin</notes>
                <include segmentGroup="axon_0"/>
                <include segmentGroup="axon_1"/>
                <include segmentGroup="dend_0"/>
                <include segmentGroup="dend_1"/>
                <include segmentGroup="dend_2"/>
                <include segmentGroup="dend_3"/>
                <include segmentGroup="dend_4"/>
                <include segmentGroup="dend_5"/>
                <include segmentGroup="dend_6"/>
                <include segmentGroup="dend_7"/>
                <include segmentGroup="dend_8"/>
                <include segmentGroup="dend_9"/>
                <include segmentGroup="dend_10"/>
                <include segmentGroup="dend_11"/>
                <include segmentGroup="dend_12"/>
                <include segmentGroup="dend_13"/>
                <include segmentGroup="dend_14"/>
                <include segmentGroup="dend_15"/>
                <include segmentGroup="dend_16"/>
                <include segmentGroup="dend_17"/>
                <include segmentGroup="dend_18"/>
                <include segmentGroup="dend_19"/>
                <include segmentGroup="dend_20"/>
                <include segmentGroup="dend_21"/>
                <include segmentGroup="dend_22"/>
                <include segmentGroup="dend_23"/>
                <include segmentGroup="dend_24"/>
                <include segmentGroup="dend_25"/>
                <include segmentGroup="dend_26"/>
                <include segmentGroup="dend_27"/>
                <include segmentGroup="dend_28"/>
                <include segmentGroup="dend_29"/>
                <include segmentGroup="dend_30"/>
                <include segmentGroup="dend_31"/>
                <include segmentGroup="dend_32"/>
                <include segmentGroup="dend_33"/>
                <include segmentGroup="dend_34"/>
                <include segmentGroup="dend_35"/>
                <include segmentGroup="dend_36"/>
                <include segmentGroup="dend_37"/>
                <include segmentGroup="dend_38"/>
                <include segmentGroup="dend_39"/>
                <include segmentGroup="dend_40"/>
                <include segmentGroup="dend_41"/>
                <include segmentGroup="dend_42"/>
                <include segmentGroup="dend_43"/>
                <include segmentGroup="dend_44"/>
                <include segmentGroup="dend_45"/>
                <include segmentGroup="dend_46"/>
                <include segmentGroup="dend_47"/>
                <include segmentGroup="dend_48"/>
                <include segmentGroup="dend_49"/>
                <include segmentGroup="dend_50"/>
                <include segmentGroup="dend_51"/>
                <include segmentGroup="dend_52"/>
                <include segmentGroup="dend_53"/>
                <include segmentGroup="dend_54"/>
                <include segmentGroup="soma_0"/>
            </segmentGroup>
            <segmentGroup id="soma_group" neuroLexId="GO:0043025">
                <notes>Default soma segment group for the cell</notes>
                <include segmentGroup="soma_0"/>
            </segmentGroup>
            <segmentGroup id="axon_group" neuroLexId="GO:0030424">
                <notes>Default axon segment group for the cell</notes>
                <include segmentGroup="axon_0"/>
                <include segmentGroup="axon_1"/>
            </segmentGroup>
            <segmentGroup id="dendrite_group" neuroLexId="GO:0030425">
                <notes>Default dendrite segment group for the cell</notes>
                <include segmentGroup="basal_dendrite_group"/>
            </segmentGroup>
            <segmentGroup id="all">
                <include segmentGroup="axon_0"/>
                <include segmentGroup="axon_1"/>
                <include segmentGroup="dend_0"/>
                <include segmentGroup="dend_1"/>
                <include segmentGroup="dend_2"/>
                <include segmentGroup="dend_3"/>
                <include segmentGroup="dend_4"/>
                <include segmentGroup="dend_5"/>
                <include segmentGroup="dend_6"/>
                <include segmentGroup="dend_7"/>
                <include segmentGroup="dend_8"/>
                <include segmentGroup="dend_9"/>
                <include segmentGroup="dend_10"/>
                <include segmentGroup="dend_11"/>
                <include segmentGroup="dend_12"/>
                <include segmentGroup="dend_13"/>
                <include segmentGroup="dend_14"/>
                <include segmentGroup="dend_15"/>
                <include segmentGroup="dend_16"/>
                <include segmentGroup="dend_17"/>
                <include segmentGroup="dend_18"/>
                <include segmentGroup="dend_19"/>
                <include segmentGroup="dend_20"/>
                <include segmentGroup="dend_21"/>
                <include segmentGroup="dend_22"/>
                <include segmentGroup="dend_23"/>
                <include segmentGroup="dend_24"/>
                <include segmentGroup="dend_25"/>
                <include segmentGroup="dend_26"/>
                <include segmentGroup="dend_27"/>
                <include segmentGroup="dend_28"/>
                <include segmentGroup="dend_29"/>
                <include segmentGroup="dend_30"/>
                <include segmentGroup="dend_31"/>
                <include segmentGroup="dend_32"/>
                <include segmentGroup="dend_33"/>
                <include segmentGroup="dend_34"/>
                <include segmentGroup="dend_35"/>
                <include segmentGroup="dend_36"/>
                <include segmentGroup="dend_37"/>
                <include segmentGroup="dend_38"/>
                <include segmentGroup="dend_39"/>
                <include segmentGroup="dend_40"/>
                <include segmentGroup="dend_41"/>
                <include segmentGroup="dend_42"/>
                <include segmentGroup="dend_43"/>
                <include segmentGroup="dend_44"/>
                <include segmentGroup="dend_45"/>
                <include segmentGroup="dend_46"/>
                <include segmentGroup="dend_47"/>
                <include segmentGroup="dend_48"/>
                <include segmentGroup="dend_49"/>
                <include segmentGroup="dend_50"/>
                <include segmentGroup="dend_51"/>
                <include segmentGroup="dend_52"/>
                <include segmentGroup="dend_53"/>
                <include segmentGroup="dend_54"/>
                <include segmentGroup="myelin_0"/>
                <include segmentGroup="soma_0"/>
            </segmentGroup>
        </morphology>
        <biophysicalProperties id="biophys">
            <membraneProperties>
                <channelDensity id="pas" ionChannel="pas" condDensity="0.0000232 S_per_cm2" erev="-81.5 mV" segmentGroup="all_minus_myelin" ion="non_specific"/>
                <channelDensity id="NaTg_somatic" ionChannel="NaTg_SST_somatic" condDensity="0.127 S_per_cm2" erev="50 mV" segmentGroup="soma_group" ion="na"/>
                <channelDensity id="Ih_somatic" ionChannel="Ih" condDensity="0.0000431 S_per_cm2" erev="-45 mV" segmentGroup="soma_group" ion="hcn"/>
                <channelDensity id="K_P_somatic" ionChannel="K_P" condDensity="0.0111 S_per_cm2" erev="-85 mV" segmentGroup="soma_group" ion="k"/>
                <channelDensity id="K_T_somatic" ionChannel="K_T" condDensity="0.00000 S_per_cm2" erev="-85 mV" segmentGroup="soma_group" ion="k"/>
                <channelDensity id="Kv3_1_somatic" ionChannel="Kv3_1" condDensity="0.871 S_per_cm2" erev="-85 mV" segmentGroup="soma_group" ion="k"/>
                <channelDensity id="Im_somatic" ionChannel="Im" condDensity="0.000158 S_per_cm2" erev="-85 mV" segmentGroup="soma_group" ion="k"/>
                <channelDensity id="SK_somatic" ionChannel="SK" condDensity="0.00 S_per_cm2" erev="-85 mV" segmentGroup="soma_group" ion="k"/>
                <channelDensity id="Ih_basal" ionChannel="Ih" condDensity="0.0000949 S_per_cm2" erev="-45 mV" segmentGroup="basal_dendrite_group" ion="hcn"/>
                <channelDensity id="NaTg_axonal" ionChannel="NaTg_SST_axonal" condDensity="0.343 S_per_cm2" erev="50 mV" segmentGroup="axon_group" ion="na"/>
                <channelDensity id="Nap_axonal" ionChannel="Nap" condDensity="0.000444 S_per_cm2" erev="50 mV" segmentGroup="axon_group" ion="na"/>
                <channelDensity id="K_P_axonal" ionChannel="K_P" condDensity="0.0295 S_per_cm2" erev="-85 mV" segmentGroup="axon_group" ion="k"/>
                <channelDensity id="K_T_axonal" ionChannel="K_T" condDensity="0.023 S_per_cm2" erev="-85 mV" segmentGroup="axon_group" ion="k"/>
                <channelDensity id="Kv3_1_axonal" ionChannel="Kv3_1" condDensity="0.984 S_per_cm2" erev="-85 mV" segmentGroup="axon_group" ion="k"/>
                <channelDensity id="Im_axonal" ionChannel="Im" condDensity="0.000317 S_per_cm2" erev="-85 mV" segmentGroup="axon_group" ion="k"/>
                <channelDensity id="SK_axonal" ionChannel="SK" condDensity="0.00113 S_per_cm2" erev="-85 mV" segmentGroup="axon_group" ion="k"/>
                <channelDensity id="Ih_axonal" ionChannel="Ih" condDensity="0.00001 S_per_cm2" erev="-45 mV" segmentGroup="axon_group" ion="hcn"/>
                <channelDensityNernst id="Ca_HVA_somatic" ionChannel="Ca_HVA" condDensity="0.00355 S_per_cm2" segmentGroup="soma_group" ion="ca"/>
                <channelDensityNernst id="Ca_LVA_somatic" ionChannel="Ca_LVA" condDensity="0.00314 S_per_cm2" segmentGroup="soma_group" ion="ca"/>
                <channelDensityNernst id="Ca_HVA_axonal" ionChannel="Ca_HVA" condDensity="0.00145 S_per_cm2" segmentGroup="axon_group" ion="ca"/>
                <channelDensityNernst id="Ca_LVA_axonal" ionChannel="Ca_LVA" condDensity="0.0627 S_per_cm2" segmentGroup="axon_group" ion="ca"/>
                <specificCapacitance value="1 uF_per_cm2" segmentGroup="all_minus_myelin"/>
                <specificCapacitance value="0.02 uF_per_cm2" segmentGroup="myelin_group"/>
                <specificCapacitance value="1 uF_per_cm2" segmentGroup="basal_dendrite_group"/>
                <initMembPotential value="-80mV"/>
            </membraneProperties>
            <intracellularProperties>
                <species id="ca" concentrationModel="CaDynamics_E2_NML2_SST_somatic" ion="ca" initialConcentration="1e-4 mM" initialExtConcentration="2.0E-6 mol_per_cm3" segmentGroup="soma_group"/>
                <species id="ca" concentrationModel="CaDynamics_E2_NML2_SST_axonal" ion="ca" initialConcentration="1e-4 mM" initialExtConcentration="2.0E-6 mol_per_cm3" segmentGroup="axon_group"/>
                <resistivity value="0.1 kohm_cm" segmentGroup="all_minus_myelin"/>
                <resistivity value="0.1 kohm_cm" segmentGroup="myelin_group"/>
            </intracellularProperties>
        </biophysicalProperties>
    </cell>
</neuroml>