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- <member segment="2706"/>
- <member segment="2707"/>
- <member segment="2708"/>
- <member segment="2709"/>
- <member segment="2710"/>
- <member segment="2711"/>
- <member segment="2712"/>
- <member segment="2713"/>
- <member segment="2714"/>
- <member segment="2715"/>
- <member segment="2716"/>
- <member segment="2717"/>
- <member segment="2718"/>
- <member segment="2719"/>
- <member segment="2720"/>
- <member segment="2721"/>
- <member segment="2722"/>
- <member segment="2723"/>
- <member segment="2724"/>
- <member segment="2725"/>
- <member segment="2726"/>
- <member segment="2727"/>
- <member segment="2728"/>
- <member segment="2729"/>
- <member segment="2730"/>
- <member segment="2731"/>
- <member segment="2732"/>
- <member segment="2733"/>
- <member segment="2734"/>
- <member segment="2735"/>
- <member segment="2736"/>
- <member segment="2737"/>
- </segmentGroup>
- <segmentGroup id="dend_44" neuroLexId="sao864921383">
- <notes>This group contains an unbranched set of segments, and all of the segmentGroups marked with
- neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
- These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
- <member segment="2556"/>
- <member segment="2557"/>
- <member segment="2558"/>
- <member segment="2559"/>
- <member segment="2560"/>
- <member segment="2561"/>
- <member segment="2562"/>
- <member segment="2563"/>
- <member segment="2564"/>
- <member segment="2565"/>
- <member segment="2566"/>
- <member segment="2567"/>
- <member segment="2568"/>
- <member segment="2569"/>
- <member segment="2570"/>
- <member segment="2571"/>
- <member segment="2572"/>
- <member segment="2573"/>
- <member segment="2574"/>
- <member segment="2575"/>
- <member segment="2576"/>
- <member segment="2577"/>
- <member segment="2578"/>
- <member segment="2579"/>
- <member segment="2580"/>
- <member segment="2581"/>
- <member segment="2582"/>
- <member segment="2583"/>
- <member segment="2584"/>
- <member segment="2585"/>
- <member segment="2586"/>
- <member segment="2587"/>
- <member segment="2588"/>
- <member segment="2589"/>
- </segmentGroup>
- <segmentGroup id="dend_43" neuroLexId="sao864921383">
- <notes>This group contains an unbranched set of segments, and all of the segmentGroups marked with
- neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
- These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
- <property tag="numberInternalDivisions" value="3"/>
- <annotation>
- <property xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:xs="http://www.w3.org/2001/XMLSchema" tag="numberInternalDivisions" value="3"/>
-
-
- </annotation>
- <member segment="2507"/>
- <member segment="2508"/>
- <member segment="2509"/>
- <member segment="2510"/>
- <member segment="2511"/>
- <member segment="2512"/>
- <member segment="2513"/>
- <member segment="2514"/>
- <member segment="2515"/>
- <member segment="2516"/>
- <member segment="2517"/>
- <member segment="2518"/>
- <member segment="2519"/>
- <member segment="2520"/>
- <member segment="2521"/>
- <member segment="2522"/>
- <member segment="2523"/>
- <member segment="2524"/>
- <member segment="2525"/>
- <member segment="2526"/>
- <member segment="2527"/>
- <member segment="2528"/>
- <member segment="2529"/>
- <member segment="2530"/>
- <member segment="2531"/>
- <member segment="2532"/>
- <member segment="2533"/>
- <member segment="2534"/>
- <member segment="2535"/>
- <member segment="2536"/>
- <member segment="2537"/>
- <member segment="2538"/>
- <member segment="2539"/>
- <member segment="2540"/>
- <member segment="2541"/>
- <member segment="2542"/>
- <member segment="2543"/>
- <member segment="2544"/>
- <member segment="2545"/>
- <member segment="2546"/>
- <member segment="2547"/>
- <member segment="2548"/>
- <member segment="2549"/>
- <member segment="2550"/>
- <member segment="2551"/>
- <member segment="2552"/>
- <member segment="2553"/>
- <member segment="2554"/>
- <member segment="2555"/>
- </segmentGroup>
- <segmentGroup id="dend_29" neuroLexId="sao864921383">
- <notes>This group contains an unbranched set of segments, and all of the segmentGroups marked with
- neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
- These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
- <member segment="1929"/>
- <member segment="1930"/>
- <member segment="1931"/>
- <member segment="1932"/>
- <member segment="1933"/>
- <member segment="1934"/>
- <member segment="1935"/>
- </segmentGroup>
- <segmentGroup id="dend_28" neuroLexId="sao864921383">
- <notes>This group contains an unbranched set of segments, and all of the segmentGroups marked with
- neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
- These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
- <member segment="1900"/>
- <member segment="1901"/>
- <member segment="1902"/>
- <member segment="1903"/>
- <member segment="1904"/>
- <member segment="1905"/>
- <member segment="1906"/>
- <member segment="1907"/>
- <member segment="1908"/>
- <member segment="1909"/>
- <member segment="1910"/>
- <member segment="1911"/>
- <member segment="1912"/>
- <member segment="1913"/>
- <member segment="1914"/>
- <member segment="1915"/>
- <member segment="1916"/>
- <member segment="1917"/>
- <member segment="1918"/>
- <member segment="1919"/>
- <member segment="1920"/>
- <member segment="1921"/>
- <member segment="1922"/>
- <member segment="1923"/>
- <member segment="1924"/>
- <member segment="1925"/>
- <member segment="1926"/>
- <member segment="1927"/>
- <member segment="1928"/>
- </segmentGroup>
- <segmentGroup id="dend_53" neuroLexId="sao864921383">
- <notes>This group contains an unbranched set of segments, and all of the segmentGroups marked with
- neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
- These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
- <member segment="3146"/>
- <member segment="3147"/>
- <member segment="3148"/>
- <member segment="3149"/>
- <member segment="3150"/>
- <member segment="3151"/>
- <member segment="3152"/>
- <member segment="3153"/>
- <member segment="3154"/>
- <member segment="3155"/>
- <member segment="3156"/>
- <member segment="3157"/>
- <member segment="3158"/>
- <member segment="3159"/>
- <member segment="3160"/>
- <member segment="3161"/>
- <member segment="3162"/>
- <member segment="3163"/>
- <member segment="3164"/>
- </segmentGroup>
- <segmentGroup id="dend_52" neuroLexId="sao864921383">
- <notes>This group contains an unbranched set of segments, and all of the segmentGroups marked with
- neuroLexId = sao864921383 form a non-overlapping set of all of the segments.
- These segmentGroups correspond to the 'cables' of NeuroML v1.8.1, and map to/from NEURON sections.</notes>
- <property tag="numberInternalDivisions" value="5"/>
- <annotation>
- <property xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:xs="http://www.w3.org/2001/XMLSchema" tag="numberInternalDivisions" value="5"/>
-
-
- </annotation>
- <member segment="3044"/>
- <member segment="3045"/>
- <member segment="3046"/>
- <member segment="3047"/>
- <member segment="3048"/>
- <member segment="3049"/>
- <member segment="3050"/>
- <member segment="3051"/>
- <member segment="3052"/>
- <member segment="3053"/>
- <member segment="3054"/>
- <member segment="3055"/>
- <member segment="3056"/>
- <member segment="3057"/>
- <member segment="3058"/>
- <member segment="3059"/>
- <member segment="3060"/>
- <member segment="3061"/>
- <member segment="3062"/>
- <member segment="3063"/>
- <member segment="3064"/>
- <member segment="3065"/>
- <member segment="3066"/>
- <member segment="3067"/>
- <member segment="3068"/>
- <member segment="3069"/>
- <member segment="3070"/>
- <member segment="3071"/>
- <member segment="3072"/>
- <member segment="3073"/>
- <member segment="3074"/>
- <member segment="3075"/>
- <member segment="3076"/>
- <member segment="3077"/>
- <member segment="3078"/>
- <member segment="3079"/>
- <member segment="3080"/>
- <member segment="3081"/>
- <member segment="3082"/>
- <member segment="3083"/>
- <member segment="3084"/>
- <member segment="3085"/>
- <member segment="3086"/>
- <member segment="3087"/>
- <member segment="3088"/>
- <member segment="3089"/>
- <member segment="3090"/>
- <member segment="3091"/>
- <member segment="3092"/>
- <member segment="3093"/>
- <member segment="3094"/>
- <member segment="3095"/>
- <member segment="3096"/>
- <member segment="3097"/>
- <member segment="3098"/>
- <member segment="3099"/>
- <member segment="3100"/>
- <member segment="3101"/>
- <member segment="3102"/>
- <member segment="3103"/>
- <member segment="3104"/>
- <member segment="3105"/>
- <member segment="3106"/>
- <member segment="3107"/>
- <member segment="3108"/>
- <member segment="3109"/>
- <member segment="3110"/>
- <member segment="3111"/>
- <member segment="3112"/>
- <member segment="3113"/>
- <member segment="3114"/>
- <member segment="3115"/>
- <member segment="3116"/>
- <member segment="3117"/>
- <member segment="3118"/>
- <member segment="3119"/>
- <member segment="3120"/>
- <member segment="3121"/>
- <member segment="3122"/>
- <member segment="3123"/>
- <member segment="3124"/>
- <member segment="3125"/>
- <member segment="3126"/>
- <member segment="3127"/>
- <member segment="3128"/>
- <member segment="3129"/>
- <member segment="3130"/>
- <member segment="3131"/>
- <member segment="3132"/>
- <member segment="3133"/>
- <member segment="3134"/>
- <member segment="3135"/>
- <member segment="3136"/>
- <member segment="3137"/>
- <member segment="3138"/>
- <member segment="3139"/>
- <member segment="3140"/>
- <member segment="3141"/>
- <member segment="3142"/>
- <member segment="3143"/>
- <member segment="3144"/>
- <member segment="3145"/>
- </segmentGroup>
- <segmentGroup id="basal_dendrite_group" neuroLexId="GO:0030425">
- <notes>Basal dendrites</notes>
- <include segmentGroup="dend_0"/>
- <include segmentGroup="dend_1"/>
- <include segmentGroup="dend_2"/>
- <include segmentGroup="dend_3"/>
- <include segmentGroup="dend_4"/>
- <include segmentGroup="dend_5"/>
- <include segmentGroup="dend_6"/>
- <include segmentGroup="dend_7"/>
- <include segmentGroup="dend_8"/>
- <include segmentGroup="dend_9"/>
- <include segmentGroup="dend_10"/>
- <include segmentGroup="dend_11"/>
- <include segmentGroup="dend_12"/>
- <include segmentGroup="dend_13"/>
- <include segmentGroup="dend_14"/>
- <include segmentGroup="dend_15"/>
- <include segmentGroup="dend_16"/>
- <include segmentGroup="dend_17"/>
- <include segmentGroup="dend_18"/>
- <include segmentGroup="dend_19"/>
- <include segmentGroup="dend_20"/>
- <include segmentGroup="dend_21"/>
- <include segmentGroup="dend_22"/>
- <include segmentGroup="dend_23"/>
- <include segmentGroup="dend_24"/>
- <include segmentGroup="dend_25"/>
- <include segmentGroup="dend_26"/>
- <include segmentGroup="dend_27"/>
- <include segmentGroup="dend_28"/>
- <include segmentGroup="dend_29"/>
- <include segmentGroup="dend_30"/>
- <include segmentGroup="dend_31"/>
- <include segmentGroup="dend_32"/>
- <include segmentGroup="dend_33"/>
- <include segmentGroup="dend_34"/>
- <include segmentGroup="dend_35"/>
- <include segmentGroup="dend_36"/>
- <include segmentGroup="dend_37"/>
- <include segmentGroup="dend_38"/>
- <include segmentGroup="dend_39"/>
- <include segmentGroup="dend_40"/>
- <include segmentGroup="dend_41"/>
- <include segmentGroup="dend_42"/>
- <include segmentGroup="dend_43"/>
- <include segmentGroup="dend_44"/>
- <include segmentGroup="dend_45"/>
- <include segmentGroup="dend_46"/>
- <include segmentGroup="dend_47"/>
- <include segmentGroup="dend_48"/>
- <include segmentGroup="dend_49"/>
- <include segmentGroup="dend_50"/>
- <include segmentGroup="dend_51"/>
- <include segmentGroup="dend_52"/>
- <include segmentGroup="dend_53"/>
- <include segmentGroup="dend_54"/>
- </segmentGroup>
- <segmentGroup id="myelin_group">
- <notes>Myelin group</notes>
- <include segmentGroup="myelin_0"/>
- </segmentGroup>
- <segmentGroup id="all_minus_myelin">
- <notes>All without myelin</notes>
- <include segmentGroup="axon_0"/>
- <include segmentGroup="axon_1"/>
- <include segmentGroup="dend_0"/>
- <include segmentGroup="dend_1"/>
- <include segmentGroup="dend_2"/>
- <include segmentGroup="dend_3"/>
- <include segmentGroup="dend_4"/>
- <include segmentGroup="dend_5"/>
- <include segmentGroup="dend_6"/>
- <include segmentGroup="dend_7"/>
- <include segmentGroup="dend_8"/>
- <include segmentGroup="dend_9"/>
- <include segmentGroup="dend_10"/>
- <include segmentGroup="dend_11"/>
- <include segmentGroup="dend_12"/>
- <include segmentGroup="dend_13"/>
- <include segmentGroup="dend_14"/>
- <include segmentGroup="dend_15"/>
- <include segmentGroup="dend_16"/>
- <include segmentGroup="dend_17"/>
- <include segmentGroup="dend_18"/>
- <include segmentGroup="dend_19"/>
- <include segmentGroup="dend_20"/>
- <include segmentGroup="dend_21"/>
- <include segmentGroup="dend_22"/>
- <include segmentGroup="dend_23"/>
- <include segmentGroup="dend_24"/>
- <include segmentGroup="dend_25"/>
- <include segmentGroup="dend_26"/>
- <include segmentGroup="dend_27"/>
- <include segmentGroup="dend_28"/>
- <include segmentGroup="dend_29"/>
- <include segmentGroup="dend_30"/>
- <include segmentGroup="dend_31"/>
- <include segmentGroup="dend_32"/>
- <include segmentGroup="dend_33"/>
- <include segmentGroup="dend_34"/>
- <include segmentGroup="dend_35"/>
- <include segmentGroup="dend_36"/>
- <include segmentGroup="dend_37"/>
- <include segmentGroup="dend_38"/>
- <include segmentGroup="dend_39"/>
- <include segmentGroup="dend_40"/>
- <include segmentGroup="dend_41"/>
- <include segmentGroup="dend_42"/>
- <include segmentGroup="dend_43"/>
- <include segmentGroup="dend_44"/>
- <include segmentGroup="dend_45"/>
- <include segmentGroup="dend_46"/>
- <include segmentGroup="dend_47"/>
- <include segmentGroup="dend_48"/>
- <include segmentGroup="dend_49"/>
- <include segmentGroup="dend_50"/>
- <include segmentGroup="dend_51"/>
- <include segmentGroup="dend_52"/>
- <include segmentGroup="dend_53"/>
- <include segmentGroup="dend_54"/>
- <include segmentGroup="soma_0"/>
- </segmentGroup>
- <segmentGroup id="soma_group" neuroLexId="GO:0043025">
- <notes>Default soma segment group for the cell</notes>
- <include segmentGroup="soma_0"/>
- </segmentGroup>
- <segmentGroup id="axon_group" neuroLexId="GO:0030424">
- <notes>Default axon segment group for the cell</notes>
- <include segmentGroup="axon_0"/>
- <include segmentGroup="axon_1"/>
- </segmentGroup>
- <segmentGroup id="dendrite_group" neuroLexId="GO:0030425">
- <notes>Default dendrite segment group for the cell</notes>
- <include segmentGroup="basal_dendrite_group"/>
- </segmentGroup>
- <segmentGroup id="all">
- <include segmentGroup="axon_0"/>
- <include segmentGroup="axon_1"/>
- <include segmentGroup="dend_0"/>
- <include segmentGroup="dend_1"/>
- <include segmentGroup="dend_2"/>
- <include segmentGroup="dend_3"/>
- <include segmentGroup="dend_4"/>
- <include segmentGroup="dend_5"/>
- <include segmentGroup="dend_6"/>
- <include segmentGroup="dend_7"/>
- <include segmentGroup="dend_8"/>
- <include segmentGroup="dend_9"/>
- <include segmentGroup="dend_10"/>
- <include segmentGroup="dend_11"/>
- <include segmentGroup="dend_12"/>
- <include segmentGroup="dend_13"/>
- <include segmentGroup="dend_14"/>
- <include segmentGroup="dend_15"/>
- <include segmentGroup="dend_16"/>
- <include segmentGroup="dend_17"/>
- <include segmentGroup="dend_18"/>
- <include segmentGroup="dend_19"/>
- <include segmentGroup="dend_20"/>
- <include segmentGroup="dend_21"/>
- <include segmentGroup="dend_22"/>
- <include segmentGroup="dend_23"/>
- <include segmentGroup="dend_24"/>
- <include segmentGroup="dend_25"/>
- <include segmentGroup="dend_26"/>
- <include segmentGroup="dend_27"/>
- <include segmentGroup="dend_28"/>
- <include segmentGroup="dend_29"/>
- <include segmentGroup="dend_30"/>
- <include segmentGroup="dend_31"/>
- <include segmentGroup="dend_32"/>
- <include segmentGroup="dend_33"/>
- <include segmentGroup="dend_34"/>
- <include segmentGroup="dend_35"/>
- <include segmentGroup="dend_36"/>
- <include segmentGroup="dend_37"/>
- <include segmentGroup="dend_38"/>
- <include segmentGroup="dend_39"/>
- <include segmentGroup="dend_40"/>
- <include segmentGroup="dend_41"/>
- <include segmentGroup="dend_42"/>
- <include segmentGroup="dend_43"/>
- <include segmentGroup="dend_44"/>
- <include segmentGroup="dend_45"/>
- <include segmentGroup="dend_46"/>
- <include segmentGroup="dend_47"/>
- <include segmentGroup="dend_48"/>
- <include segmentGroup="dend_49"/>
- <include segmentGroup="dend_50"/>
- <include segmentGroup="dend_51"/>
- <include segmentGroup="dend_52"/>
- <include segmentGroup="dend_53"/>
- <include segmentGroup="dend_54"/>
- <include segmentGroup="myelin_0"/>
- <include segmentGroup="soma_0"/>
- </segmentGroup>
- </morphology>
- <biophysicalProperties id="biophys">
- <membraneProperties>
- <channelDensity id="pas" ionChannel="pas" condDensity="0.0000232 S_per_cm2" erev="-81.5 mV" segmentGroup="all_minus_myelin" ion="non_specific"/>
- <channelDensity id="NaTg_somatic" ionChannel="NaTg_SST_somatic" condDensity="0.127 S_per_cm2" erev="50 mV" segmentGroup="soma_group" ion="na"/>
- <channelDensity id="Ih_somatic" ionChannel="Ih" condDensity="0.0000431 S_per_cm2" erev="-45 mV" segmentGroup="soma_group" ion="hcn"/>
- <channelDensity id="K_P_somatic" ionChannel="K_P" condDensity="0.0111 S_per_cm2" erev="-85 mV" segmentGroup="soma_group" ion="k"/>
- <channelDensity id="K_T_somatic" ionChannel="K_T" condDensity="0.00000 S_per_cm2" erev="-85 mV" segmentGroup="soma_group" ion="k"/>
- <channelDensity id="Kv3_1_somatic" ionChannel="Kv3_1" condDensity="0.871 S_per_cm2" erev="-85 mV" segmentGroup="soma_group" ion="k"/>
- <channelDensity id="Im_somatic" ionChannel="Im" condDensity="0.000158 S_per_cm2" erev="-85 mV" segmentGroup="soma_group" ion="k"/>
- <channelDensity id="SK_somatic" ionChannel="SK" condDensity="0.00 S_per_cm2" erev="-85 mV" segmentGroup="soma_group" ion="k"/>
- <channelDensity id="Ih_basal" ionChannel="Ih" condDensity="0.0000949 S_per_cm2" erev="-45 mV" segmentGroup="basal_dendrite_group" ion="hcn"/>
- <channelDensity id="NaTg_axonal" ionChannel="NaTg_SST_axonal" condDensity="0.343 S_per_cm2" erev="50 mV" segmentGroup="axon_group" ion="na"/>
- <channelDensity id="Nap_axonal" ionChannel="Nap" condDensity="0.000444 S_per_cm2" erev="50 mV" segmentGroup="axon_group" ion="na"/>
- <channelDensity id="K_P_axonal" ionChannel="K_P" condDensity="0.0295 S_per_cm2" erev="-85 mV" segmentGroup="axon_group" ion="k"/>
- <channelDensity id="K_T_axonal" ionChannel="K_T" condDensity="0.023 S_per_cm2" erev="-85 mV" segmentGroup="axon_group" ion="k"/>
- <channelDensity id="Kv3_1_axonal" ionChannel="Kv3_1" condDensity="0.984 S_per_cm2" erev="-85 mV" segmentGroup="axon_group" ion="k"/>
- <channelDensity id="Im_axonal" ionChannel="Im" condDensity="0.000317 S_per_cm2" erev="-85 mV" segmentGroup="axon_group" ion="k"/>
- <channelDensity id="SK_axonal" ionChannel="SK" condDensity="0.00113 S_per_cm2" erev="-85 mV" segmentGroup="axon_group" ion="k"/>
- <channelDensity id="Ih_axonal" ionChannel="Ih" condDensity="0.00001 S_per_cm2" erev="-45 mV" segmentGroup="axon_group" ion="hcn"/>
- <channelDensityNernst id="Ca_HVA_somatic" ionChannel="Ca_HVA" condDensity="0.00355 S_per_cm2" segmentGroup="soma_group" ion="ca"/>
- <channelDensityNernst id="Ca_LVA_somatic" ionChannel="Ca_LVA" condDensity="0.00314 S_per_cm2" segmentGroup="soma_group" ion="ca"/>
- <channelDensityNernst id="Ca_HVA_axonal" ionChannel="Ca_HVA" condDensity="0.00145 S_per_cm2" segmentGroup="axon_group" ion="ca"/>
- <channelDensityNernst id="Ca_LVA_axonal" ionChannel="Ca_LVA" condDensity="0.0627 S_per_cm2" segmentGroup="axon_group" ion="ca"/>
- <specificCapacitance value="1 uF_per_cm2" segmentGroup="all_minus_myelin"/>
- <specificCapacitance value="0.02 uF_per_cm2" segmentGroup="myelin_group"/>
- <specificCapacitance value="1 uF_per_cm2" segmentGroup="basal_dendrite_group"/>
- <initMembPotential value="-80mV"/>
- </membraneProperties>
- <intracellularProperties>
- <species id="ca" concentrationModel="CaDynamics_E2_NML2_SST_somatic" ion="ca" initialConcentration="1e-4 mM" initialExtConcentration="2.0E-6 mol_per_cm3" segmentGroup="soma_group"/>
- <species id="ca" concentrationModel="CaDynamics_E2_NML2_SST_axonal" ion="ca" initialConcentration="1e-4 mM" initialExtConcentration="2.0E-6 mol_per_cm3" segmentGroup="axon_group"/>
- <resistivity value="0.1 kohm_cm" segmentGroup="all_minus_myelin"/>
- <resistivity value="0.1 kohm_cm" segmentGroup="myelin_group"/>
- </intracellularProperties>
- </biophysicalProperties>
- </cell>
- </neuroml>
|