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Human-L2-3-Cortical-Microcircuit
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NeuroML2
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LEMS_HL23_0.25_Sim.xml

LEMS_HL23_0.25_Sim.xml 23 KB
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  1. <Lems>
    2. 

  2. 

  3.     <!-- 
    4. 

  4. 

  5.         This LEMS file has been automatically generated using PyNeuroML v1.1.12 (libNeuroML v0.5.8)
    6. 

  6. 

  7.      -->
    8. 

  8. 

  9.     <!-- Specify which component to run -->
    10. 

  10.     <Target component="HL23Sim_0.25"/>
    11. 

  11. 

  12.     <!-- Include core NeuroML2 ComponentType definitions -->
    13. 

  13.     <Include file="Cells.xml"/>
    14. 

  14.     <Include file="Networks.xml"/>
    15. 

  15.     <Include file="Simulation.xml"/>
    16. 

  16. 

  17.     <Include file="HL23Net_0.25.net.nml"/>
    18. 

  18.     <Include file="rotated_cells/HL23PYR_sim.cell.nml"/>
    19. 

  19.     <Include file="rotated_cells/HL23SST_sim.cell.nml"/>
    20. 

  20.     <Include file="rotated_cells/HL23PV_sim.cell.nml"/>
    21. 

  21.     <Include file="rotated_cells/HL23VIP_sim.cell.nml"/>
    22. 

  22.     <Include file="lems_components_0.25.xml"/>
    23. 

  23. 

  24.     <Simulation id="HL23Sim_0.25" length="1000.0ms" step="0.025ms" target="HL23Network" seed="123">  <!-- Note seed: ensures same random numbers used every run -->
    25. 

  25.         <OutputFile id="output1" fileName="HL23Net_0.25.v.dat">
    26. 

  26.             <OutputColumn id="HL23PYR_pop_0" quantity="HL23PYR_pop/0/HL23PYR_sim/0/v"/>
    27. 

  27.             <OutputColumn id="HL23PYR_pop_1" quantity="HL23PYR_pop/1/HL23PYR_sim/0/v"/>
    28. 

  28.             <OutputColumn id="HL23PYR_pop_2" quantity="HL23PYR_pop/2/HL23PYR_sim/0/v"/>
    29. 

  29.             <OutputColumn id="HL23PYR_pop_3" quantity="HL23PYR_pop/3/HL23PYR_sim/0/v"/>
    30. 

  30.             <OutputColumn id="HL23PYR_pop_4" quantity="HL23PYR_pop/4/HL23PYR_sim/0/v"/>
    31. 

  31.             <OutputColumn id="HL23PYR_pop_5" quantity="HL23PYR_pop/5/HL23PYR_sim/0/v"/>
    32. 

  32.             <OutputColumn id="HL23PYR_pop_6" quantity="HL23PYR_pop/6/HL23PYR_sim/0/v"/>
    33. 

  33.             <OutputColumn id="HL23PYR_pop_7" quantity="HL23PYR_pop/7/HL23PYR_sim/0/v"/>
    34. 

  34.             <OutputColumn id="HL23PYR_pop_8" quantity="HL23PYR_pop/8/HL23PYR_sim/0/v"/>
    35. 

  35.             <OutputColumn id="HL23PYR_pop_9" quantity="HL23PYR_pop/9/HL23PYR_sim/0/v"/>
    36. 

  36.             <OutputColumn id="HL23PYR_pop_10" quantity="HL23PYR_pop/10/HL23PYR_sim/0/v"/>
    37. 

  37.             <OutputColumn id="HL23PYR_pop_11" quantity="HL23PYR_pop/11/HL23PYR_sim/0/v"/>
    38. 

  38.             <OutputColumn id="HL23PYR_pop_12" quantity="HL23PYR_pop/12/HL23PYR_sim/0/v"/>
    39. 

  39.             <OutputColumn id="HL23PYR_pop_13" quantity="HL23PYR_pop/13/HL23PYR_sim/0/v"/>
    40. 

  40.             <OutputColumn id="HL23PYR_pop_14" quantity="HL23PYR_pop/14/HL23PYR_sim/0/v"/>
    41. 

  41.             <OutputColumn id="HL23PYR_pop_15" quantity="HL23PYR_pop/15/HL23PYR_sim/0/v"/>
    42. 

  42.             <OutputColumn id="HL23PYR_pop_16" quantity="HL23PYR_pop/16/HL23PYR_sim/0/v"/>
    43. 

  43.             <OutputColumn id="HL23PYR_pop_17" quantity="HL23PYR_pop/17/HL23PYR_sim/0/v"/>
    44. 

  44.             <OutputColumn id="HL23PYR_pop_18" quantity="HL23PYR_pop/18/HL23PYR_sim/0/v"/>
    45. 

  45.             <OutputColumn id="HL23PYR_pop_19" quantity="HL23PYR_pop/19/HL23PYR_sim/0/v"/>
    46. 

  46.             <OutputColumn id="HL23PYR_pop_20" quantity="HL23PYR_pop/20/HL23PYR_sim/0/v"/>
    47. 

  47.             <OutputColumn id="HL23PYR_pop_21" quantity="HL23PYR_pop/21/HL23PYR_sim/0/v"/>
    48. 

  48.             <OutputColumn id="HL23PYR_pop_22" quantity="HL23PYR_pop/22/HL23PYR_sim/0/v"/>
    49. 

  49.             <OutputColumn id="HL23PYR_pop_23" quantity="HL23PYR_pop/23/HL23PYR_sim/0/v"/>
    50. 

  50.             <OutputColumn id="HL23PYR_pop_24" quantity="HL23PYR_pop/24/HL23PYR_sim/0/v"/>
    51. 

  51.             <OutputColumn id="HL23PYR_pop_25" quantity="HL23PYR_pop/25/HL23PYR_sim/0/v"/>
    52. 

  52.             <OutputColumn id="HL23PYR_pop_26" quantity="HL23PYR_pop/26/HL23PYR_sim/0/v"/>
    53. 

  53.             <OutputColumn id="HL23PYR_pop_27" quantity="HL23PYR_pop/27/HL23PYR_sim/0/v"/>
    54. 

  54.             <OutputColumn id="HL23PYR_pop_28" quantity="HL23PYR_pop/28/HL23PYR_sim/0/v"/>
    55. 

  55.             <OutputColumn id="HL23PYR_pop_29" quantity="HL23PYR_pop/29/HL23PYR_sim/0/v"/>
    56. 

  56.             <OutputColumn id="HL23PYR_pop_30" quantity="HL23PYR_pop/30/HL23PYR_sim/0/v"/>
    57. 

  57.             <OutputColumn id="HL23PYR_pop_31" quantity="HL23PYR_pop/31/HL23PYR_sim/0/v"/>
    58. 

  58.             <OutputColumn id="HL23PYR_pop_32" quantity="HL23PYR_pop/32/HL23PYR_sim/0/v"/>
    59. 

  59.             <OutputColumn id="HL23PYR_pop_33" quantity="HL23PYR_pop/33/HL23PYR_sim/0/v"/>
    60. 

  60.             <OutputColumn id="HL23PYR_pop_34" quantity="HL23PYR_pop/34/HL23PYR_sim/0/v"/>
    61. 

  61.             <OutputColumn id="HL23PYR_pop_35" quantity="HL23PYR_pop/35/HL23PYR_sim/0/v"/>
    62. 

  62.             <OutputColumn id="HL23PYR_pop_36" quantity="HL23PYR_pop/36/HL23PYR_sim/0/v"/>
    63. 

  63.             <OutputColumn id="HL23PYR_pop_37" quantity="HL23PYR_pop/37/HL23PYR_sim/0/v"/>
    64. 

  64.             <OutputColumn id="HL23PYR_pop_38" quantity="HL23PYR_pop/38/HL23PYR_sim/0/v"/>
    65. 

  65.             <OutputColumn id="HL23PYR_pop_39" quantity="HL23PYR_pop/39/HL23PYR_sim/0/v"/>
    66. 

  66.             <OutputColumn id="HL23PYR_pop_40" quantity="HL23PYR_pop/40/HL23PYR_sim/0/v"/>
    67. 

  67.             <OutputColumn id="HL23PYR_pop_41" quantity="HL23PYR_pop/41/HL23PYR_sim/0/v"/>
    68. 

  68.             <OutputColumn id="HL23PYR_pop_42" quantity="HL23PYR_pop/42/HL23PYR_sim/0/v"/>
    69. 

  69.             <OutputColumn id="HL23PYR_pop_43" quantity="HL23PYR_pop/43/HL23PYR_sim/0/v"/>
    70. 

  70.             <OutputColumn id="HL23PYR_pop_44" quantity="HL23PYR_pop/44/HL23PYR_sim/0/v"/>
    71. 

  71.             <OutputColumn id="HL23PYR_pop_45" quantity="HL23PYR_pop/45/HL23PYR_sim/0/v"/>
    72. 

  72.             <OutputColumn id="HL23PYR_pop_46" quantity="HL23PYR_pop/46/HL23PYR_sim/0/v"/>
    73. 

  73.             <OutputColumn id="HL23PYR_pop_47" quantity="HL23PYR_pop/47/HL23PYR_sim/0/v"/>
    74. 

  74.             <OutputColumn id="HL23PYR_pop_48" quantity="HL23PYR_pop/48/HL23PYR_sim/0/v"/>
    75. 

  75.             <OutputColumn id="HL23PYR_pop_49" quantity="HL23PYR_pop/49/HL23PYR_sim/0/v"/>
    76. 

  76.             <OutputColumn id="HL23PYR_pop_50" quantity="HL23PYR_pop/50/HL23PYR_sim/0/v"/>
    77. 

  77.             <OutputColumn id="HL23PYR_pop_51" quantity="HL23PYR_pop/51/HL23PYR_sim/0/v"/>
    78. 

  78.             <OutputColumn id="HL23PYR_pop_52" quantity="HL23PYR_pop/52/HL23PYR_sim/0/v"/>
    79. 

  79.             <OutputColumn id="HL23PYR_pop_53" quantity="HL23PYR_pop/53/HL23PYR_sim/0/v"/>
    80. 

  80.             <OutputColumn id="HL23PYR_pop_54" quantity="HL23PYR_pop/54/HL23PYR_sim/0/v"/>
    81. 

  81.             <OutputColumn id="HL23PYR_pop_55" quantity="HL23PYR_pop/55/HL23PYR_sim/0/v"/>
    82. 

  82.             <OutputColumn id="HL23PYR_pop_56" quantity="HL23PYR_pop/56/HL23PYR_sim/0/v"/>
    83. 

  83.             <OutputColumn id="HL23PYR_pop_57" quantity="HL23PYR_pop/57/HL23PYR_sim/0/v"/>
    84. 

  84.             <OutputColumn id="HL23PYR_pop_58" quantity="HL23PYR_pop/58/HL23PYR_sim/0/v"/>
    85. 

  85.             <OutputColumn id="HL23PYR_pop_59" quantity="HL23PYR_pop/59/HL23PYR_sim/0/v"/>
    86. 

  86.             <OutputColumn id="HL23PYR_pop_60" quantity="HL23PYR_pop/60/HL23PYR_sim/0/v"/>
    87. 

  87.             <OutputColumn id="HL23PYR_pop_61" quantity="HL23PYR_pop/61/HL23PYR_sim/0/v"/>
    88. 

  88.             <OutputColumn id="HL23PYR_pop_62" quantity="HL23PYR_pop/62/HL23PYR_sim/0/v"/>
    89. 

  89.             <OutputColumn id="HL23PYR_pop_63" quantity="HL23PYR_pop/63/HL23PYR_sim/0/v"/>
    90. 

  90.             <OutputColumn id="HL23PYR_pop_64" quantity="HL23PYR_pop/64/HL23PYR_sim/0/v"/>
    91. 

  91.             <OutputColumn id="HL23PYR_pop_65" quantity="HL23PYR_pop/65/HL23PYR_sim/0/v"/>
    92. 

  92.             <OutputColumn id="HL23PYR_pop_66" quantity="HL23PYR_pop/66/HL23PYR_sim/0/v"/>
    93. 

  93.             <OutputColumn id="HL23PYR_pop_67" quantity="HL23PYR_pop/67/HL23PYR_sim/0/v"/>
    94. 

  94.             <OutputColumn id="HL23PYR_pop_68" quantity="HL23PYR_pop/68/HL23PYR_sim/0/v"/>
    95. 

  95.             <OutputColumn id="HL23PYR_pop_69" quantity="HL23PYR_pop/69/HL23PYR_sim/0/v"/>
    96. 

  96.             <OutputColumn id="HL23PYR_pop_70" quantity="HL23PYR_pop/70/HL23PYR_sim/0/v"/>
    97. 

  97.             <OutputColumn id="HL23PYR_pop_71" quantity="HL23PYR_pop/71/HL23PYR_sim/0/v"/>
    98. 

  98.             <OutputColumn id="HL23PYR_pop_72" quantity="HL23PYR_pop/72/HL23PYR_sim/0/v"/>
    99. 

  99.             <OutputColumn id="HL23PYR_pop_73" quantity="HL23PYR_pop/73/HL23PYR_sim/0/v"/>
    100. 

  100.             <OutputColumn id="HL23PYR_pop_74" quantity="HL23PYR_pop/74/HL23PYR_sim/0/v"/>
    101. 

  101.             <OutputColumn id="HL23PYR_pop_75" quantity="HL23PYR_pop/75/HL23PYR_sim/0/v"/>
    102. 

  102.             <OutputColumn id="HL23PYR_pop_76" quantity="HL23PYR_pop/76/HL23PYR_sim/0/v"/>
    103. 

  103.             <OutputColumn id="HL23PYR_pop_77" quantity="HL23PYR_pop/77/HL23PYR_sim/0/v"/>
    104. 

  104.             <OutputColumn id="HL23PYR_pop_78" quantity="HL23PYR_pop/78/HL23PYR_sim/0/v"/>
    105. 

  105.             <OutputColumn id="HL23PYR_pop_79" quantity="HL23PYR_pop/79/HL23PYR_sim/0/v"/>
    106. 

  106.             <OutputColumn id="HL23PYR_pop_80" quantity="HL23PYR_pop/80/HL23PYR_sim/0/v"/>
    107. 

  107.             <OutputColumn id="HL23PYR_pop_81" quantity="HL23PYR_pop/81/HL23PYR_sim/0/v"/>
    108. 

  108.             <OutputColumn id="HL23PYR_pop_82" quantity="HL23PYR_pop/82/HL23PYR_sim/0/v"/>
    109. 

  109.             <OutputColumn id="HL23PYR_pop_83" quantity="HL23PYR_pop/83/HL23PYR_sim/0/v"/>
    110. 

  110.             <OutputColumn id="HL23PYR_pop_84" quantity="HL23PYR_pop/84/HL23PYR_sim/0/v"/>
    111. 

  111.             <OutputColumn id="HL23PYR_pop_85" quantity="HL23PYR_pop/85/HL23PYR_sim/0/v"/>
    112. 

  112.             <OutputColumn id="HL23PYR_pop_86" quantity="HL23PYR_pop/86/HL23PYR_sim/0/v"/>
    113. 

  113.             <OutputColumn id="HL23PYR_pop_87" quantity="HL23PYR_pop/87/HL23PYR_sim/0/v"/>
    114. 

  114.             <OutputColumn id="HL23PYR_pop_88" quantity="HL23PYR_pop/88/HL23PYR_sim/0/v"/>
    115. 

  115.             <OutputColumn id="HL23PYR_pop_89" quantity="HL23PYR_pop/89/HL23PYR_sim/0/v"/>
    116. 

  116.             <OutputColumn id="HL23PYR_pop_90" quantity="HL23PYR_pop/90/HL23PYR_sim/0/v"/>
    117. 

  117.             <OutputColumn id="HL23PYR_pop_91" quantity="HL23PYR_pop/91/HL23PYR_sim/0/v"/>
    118. 

  118.             <OutputColumn id="HL23PYR_pop_92" quantity="HL23PYR_pop/92/HL23PYR_sim/0/v"/>
    119. 

  119.             <OutputColumn id="HL23PYR_pop_93" quantity="HL23PYR_pop/93/HL23PYR_sim/0/v"/>
    120. 

  120.             <OutputColumn id="HL23PYR_pop_94" quantity="HL23PYR_pop/94/HL23PYR_sim/0/v"/>
    121. 

  121.             <OutputColumn id="HL23PYR_pop_95" quantity="HL23PYR_pop/95/HL23PYR_sim/0/v"/>
    122. 

  122.             <OutputColumn id="HL23PYR_pop_96" quantity="HL23PYR_pop/96/HL23PYR_sim/0/v"/>
    123. 

  123.             <OutputColumn id="HL23PYR_pop_97" quantity="HL23PYR_pop/97/HL23PYR_sim/0/v"/>
    124. 

  124.             <OutputColumn id="HL23PYR_pop_98" quantity="HL23PYR_pop/98/HL23PYR_sim/0/v"/>
    125. 

  125.             <OutputColumn id="HL23PYR_pop_99" quantity="HL23PYR_pop/99/HL23PYR_sim/0/v"/>
    126. 

  126.             <OutputColumn id="HL23PYR_pop_100" quantity="HL23PYR_pop/100/HL23PYR_sim/0/v"/>
    127. 

  127.             <OutputColumn id="HL23PYR_pop_101" quantity="HL23PYR_pop/101/HL23PYR_sim/0/v"/>
    128. 

  128.             <OutputColumn id="HL23PYR_pop_102" quantity="HL23PYR_pop/102/HL23PYR_sim/0/v"/>
    129. 

  129.             <OutputColumn id="HL23PYR_pop_103" quantity="HL23PYR_pop/103/HL23PYR_sim/0/v"/>
    130. 

  130.             <OutputColumn id="HL23PYR_pop_104" quantity="HL23PYR_pop/104/HL23PYR_sim/0/v"/>
    131. 

  131.             <OutputColumn id="HL23PYR_pop_105" quantity="HL23PYR_pop/105/HL23PYR_sim/0/v"/>
    132. 

  132.             <OutputColumn id="HL23PYR_pop_106" quantity="HL23PYR_pop/106/HL23PYR_sim/0/v"/>
    133. 

  133.             <OutputColumn id="HL23PYR_pop_107" quantity="HL23PYR_pop/107/HL23PYR_sim/0/v"/>
    134. 

  134.             <OutputColumn id="HL23PYR_pop_108" quantity="HL23PYR_pop/108/HL23PYR_sim/0/v"/>
    135. 

  135.             <OutputColumn id="HL23PYR_pop_109" quantity="HL23PYR_pop/109/HL23PYR_sim/0/v"/>
    136. 

  136.             <OutputColumn id="HL23PYR_pop_110" quantity="HL23PYR_pop/110/HL23PYR_sim/0/v"/>
    137. 

  137.             <OutputColumn id="HL23PYR_pop_111" quantity="HL23PYR_pop/111/HL23PYR_sim/0/v"/>
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  138.             <OutputColumn id="HL23PYR_pop_112" quantity="HL23PYR_pop/112/HL23PYR_sim/0/v"/>
    139. 

  139.             <OutputColumn id="HL23PYR_pop_113" quantity="HL23PYR_pop/113/HL23PYR_sim/0/v"/>
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  140.             <OutputColumn id="HL23PYR_pop_114" quantity="HL23PYR_pop/114/HL23PYR_sim/0/v"/>
    141. 

  141.             <OutputColumn id="HL23PYR_pop_115" quantity="HL23PYR_pop/115/HL23PYR_sim/0/v"/>
    142. 

  142.             <OutputColumn id="HL23PYR_pop_116" quantity="HL23PYR_pop/116/HL23PYR_sim/0/v"/>
    143. 

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  144.             <OutputColumn id="HL23PYR_pop_118" quantity="HL23PYR_pop/118/HL23PYR_sim/0/v"/>
    145. 

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    150. 

  150.             <OutputColumn id="HL23PYR_pop_124" quantity="HL23PYR_pop/124/HL23PYR_sim/0/v"/>
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  151.             <OutputColumn id="HL23PYR_pop_125" quantity="HL23PYR_pop/125/HL23PYR_sim/0/v"/>
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  174.             <OutputColumn id="HL23PYR_pop_148" quantity="HL23PYR_pop/148/HL23PYR_sim/0/v"/>
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  176.             <OutputColumn id="HL23PYR_pop_150" quantity="HL23PYR_pop/150/HL23PYR_sim/0/v"/>
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  177.             <OutputColumn id="HL23PYR_pop_151" quantity="HL23PYR_pop/151/HL23PYR_sim/0/v"/>
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    184. 

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    185. 

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    187. 

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    188. 

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    189. 

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    190. 

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    191. 

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    192. 

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    193. 

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    194. 

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    195. 

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    196. 

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    197. 

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    198. 

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    199. 

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    200. 

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    201. 

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    202. 

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    203. 

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    206. 

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    207. 

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    208. 

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    209. 

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    210. 

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    211. 

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    212. 

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    216. 

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    217. 

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    218. 

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    224. 

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    225. 

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  227.             <OutputColumn id="HL23SST_pop_1" quantity="HL23SST_pop/1/HL23SST_sim/0/v"/>
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    230. 

  230.             <OutputColumn id="HL23SST_pop_4" quantity="HL23SST_pop/4/HL23SST_sim/0/v"/>
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    232. 

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    233. 

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    234. 

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    235. 

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    236. 

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    238. 

  238.             <OutputColumn id="HL23SST_pop_12" quantity="HL23SST_pop/12/HL23SST_sim/0/v"/>
    239. 

  239.             <OutputColumn id="HL23PV_pop_0" quantity="HL23PV_pop/0/HL23PV_sim/0/v"/>
    240. 

  240.             <OutputColumn id="HL23PV_pop_1" quantity="HL23PV_pop/1/HL23PV_sim/0/v"/>
    241. 

  241.             <OutputColumn id="HL23PV_pop_2" quantity="HL23PV_pop/2/HL23PV_sim/0/v"/>
    242. 

  242.             <OutputColumn id="HL23PV_pop_3" quantity="HL23PV_pop/3/HL23PV_sim/0/v"/>
    243. 

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    244. 

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    246. 

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    249. 

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    252. 

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    253. 

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    256. 

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    257. 

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    260. 

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    261. 

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    264. 

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    268. 

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    269. 

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    270. 

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    272. 

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    274. 

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    276. 

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    277. 

  277.         </OutputFile>
    278. 

  278. 

  279.     </Simulation>
    280. 

  280. 

  281. </Lems>
    282.