## 4D multi-channel neonatal brain altas ----- This repository contains a 4D parametrized atlas multi-channel atlas of the normal term neonatal brain development during 37-44 weeks PMA presented in [(Uus et al., 2021)](http://www.frontiersin.org/articles/10.3389/fnins.2021.661704/full). The atlas was constructed from 170 normal term MRI datasets from [the dHCP project](http://http://www.developingconnectome.org/data-release/second-data-release/). The atlas includes: - 4D fitted structural MRI channels (common 0.75mm and unbiased 0.6mm space): T1w, T2w, T1w/T2w - 4D fitted diffusion MRI channels (common 0.75mm and unbiased 0.6mm space): DTI(FA, MD, RD), ODF(ODF, TDI), NODDI(FICVF, FISO, ODI), average DWI, DKI(MK), microFA - parcellation maps ([M-CRIB-WM](http://https://doi.org/10.1002/hbm.24948)-based WM ROIs, high rate change "gamma" ROIs and [the original dHCP tissue ROIs](http://https://gin.g-node.org/BioMedIA/dhcp-volumetric-atlas-groupwise)) - Gompertz model gamma maps (outputs of 4D fitting corresponding to the signal change rate in time) - transformations from 37 to 44 weeks PMA timepoints (affine in [MIRTK](https://github.com/BioMedIA/MIRTK) format and nonlinear warps in [MRtrix3](https://github.com/MRtrix3/mrtrix3) format) ----- In case you found this resource useful please give appropriate credit to the atlas: > Uus, Alena, Irina Grigorescu, Maximilian Pietsch, Dafnis Batalle, Daan Christiaens, Emer Hughes, Jana Hutter, Lucilio Cordero Grande, Anthony N. Price, Jacques-Donald Tournier, Mary A. Rutherford, Serena J. Counsell, Joseph V Hajnal, A. David Edwards, and Maria Deprez. 2021. “Multi-Channel 4D Parametrized Atlas of Macro- and Microstructural Neonatal Brain Development.” Frontiers in Neuroscience 15:721 : https://doi.org/10.3389/fnins.2021.661704