import view # this tells view all settings including the folder structure of your project # On Windows, if you copy paths from the file explorer, make sure the string below is always of the form r"......" ymlfile = r"" # any manual changes to flags, add to dictionary as required flags_to_update = { ## Example: # "CTV_scalebar": True, # "mv_xgap": 30, # "mv_ygap": 30, # "mv_exportFormat": "stack_tif", # ..... } # specify the animal to use animal = ... # specify the measus for which movies are to be generated and corresponding flag value changes measu_flags_dict = { ## Example # 34: # { # "mv_FirstFrame": 40, # "mv_LastFrame": 160 # }, # 36: # { # "mv_FirstFrame": 30, # "mv_LastFrame": 140 # }, # 50: # { # "mv_FirstFrame": 160, # "mv_LastFrame": 270 # }, # 56: {}, # 58: # { # "mv_FirstFrame": 80, # "mv_LastFrame": 260 # } } if __name__ == '__main__': # iterate over measurements of the animal for measu, measu_flags in measu_flags_dict.items(): # create a view object view_obj = view.VIEW() # load flags from yml file view_obj.update_flags_from_ymlfile(ymlfile) # update flags specified locally view_obj.update_flags(flags_to_update) # initialize view object with animal view_obj.initialize_animal(animal=animal) # load a measurement for the animal view_obj.load_measurement_data_from_current_animal(measu) # calculate signals view_obj.calculate_signals() # update movie flags for this measu view_obj.update_flags(measu_flags) # save movie for the loaded data view_obj.export_movie_for_current_measurement() if len(measu_flags_dict): # backup this script and the yml file used next to the created GDMs view_obj.backup_script_flags_configs_for_movies(files=[__file__, ymlfile])